FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0967, 206 aa
  1>>>pF1KB0967 206 - 206 aa - 206 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4603+/-0.00026; mu= 14.2443+/- 0.016
 mean_var=90.9454+/-18.497, 0's: 0 Z-trim(122.0): 5  B-trim: 2062 in 1/58
 Lambda= 0.134488
 statistics sampled from 39513 (39518) to 39513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.463), width:  16
 Scan time:  7.550

The best scores are:                                      opt bits E(85289)
NP_005599 (OMIM: 601577) protein tyrosine phosphat ( 206) 1371 274.9 6.3e-74


>>NP_005599 (OMIM: 601577) protein tyrosine phosphatase   (206 aa)
 initn: 1371 init1: 1371 opt: 1371  Z-score: 1448.2  bits: 274.9 E(85289): 6.3e-74
Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KB0 MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL
              130       140       150       160       170       180

              190       200      
pF1KB0 HAFAGSAAWDDSARAAGGQGLHVTAL
       ::::::::::::::::::::::::::
NP_005 HAFAGSAAWDDSARAAGGQGLHVTAL
              190       200      




206 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:32:43 2016 done: Sat Nov  5 17:32:44 2016
 Total Scan time:  7.550 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]