FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0967, 206 aa
  1>>>pF1KB0967 206 - 206 aa - 206 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6672+/-0.000588; mu= 13.1996+/- 0.036
 mean_var=92.8023+/-18.616, 0's: 0 Z-trim(115.3): 6  B-trim: 55 in 1/51
 Lambda= 0.133136
 statistics sampled from 15813 (15815) to 15813 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.486), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS8163.1 PTPRCAP gene_id:5790|Hs108|chr11        ( 206) 1371 272.2 1.5e-73


>>CCDS8163.1 PTPRCAP gene_id:5790|Hs108|chr11             (206 aa)
 initn: 1371 init1: 1371 opt: 1371  Z-score: 1433.8  bits: 272.2 E(32554): 1.5e-73
Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KB0 MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL
              130       140       150       160       170       180

              190       200      
pF1KB0 HAFAGSAAWDDSARAAGGQGLHVTAL
       ::::::::::::::::::::::::::
CCDS81 HAFAGSAAWDDSARAAGGQGLHVTAL
              190       200      




206 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:32:43 2016 done: Sat Nov  5 17:32:43 2016
 Total Scan time:  2.560 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]