Result of FASTA (omim) for
pFN21AB5906
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5906, 526 aa
1>>>pF1KB5906 526 - 526 aa - 526 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2171+/-0.000521; mu= 0.0968+/- 0.033
mean_var=536.8996+/-112.147, 0's: 0 Z-trim(120.9): 218 B-trim: 0 in 0/56
Lambda= 0.055351
statistics sampled from 36513 (36751) to 36513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.431), width: 16
Scan time: 11.200
The best scores are: opt bits E(85289)
NP_004951 (OMIM: 137070,608030,614782) RNA-binding ( 526) 3790 317.7 5.6e-86
NP_001164105 (OMIM: 137070,608030,614782) RNA-bind ( 525) 3767 315.8 2e-85
XP_011544083 (OMIM: 137070,608030,614782) PREDICTE ( 524) 3760 315.3 2.9e-85
NP_001164408 (OMIM: 137070,608030,614782) RNA-bind ( 522) 3740 313.7 8.9e-85
XP_005255290 (OMIM: 137070,608030,614782) PREDICTE ( 321) 1913 167.5 5.6e-41
XP_011544084 (OMIM: 137070,608030,614782) PREDICTE ( 321) 1913 167.5 5.6e-41
XP_016884151 (OMIM: 133450,612219) PREDICTED: RNA- ( 582) 1267 116.2 2.7e-25
NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592) 1214 112.0 5e-24
XP_016884147 (OMIM: 133450,612219) PREDICTED: RNA- ( 600) 1203 111.2 9.3e-24
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 1202 111.1 9.7e-24
XP_016884148 (OMIM: 133450,612219) PREDICTED: RNA- ( 599) 1200 110.9 1.1e-23
XP_016884152 (OMIM: 133450,612219) PREDICTED: RNA- ( 558) 1193 110.3 1.6e-23
XP_016884138 (OMIM: 133450,612219) PREDICTED: RNA- ( 629) 1166 108.2 7.4e-23
NP_001156758 (OMIM: 133450,612219) RNA-binding pro ( 600) 1132 105.5 4.7e-22
XP_016884137 (OMIM: 133450,612219) PREDICTED: RNA- ( 638) 1127 105.1 6.5e-22
XP_011528302 (OMIM: 133450,612219) PREDICTED: RNA- ( 640) 1126 105.0 6.9e-22
XP_016884143 (OMIM: 133450,612219) PREDICTED: RNA- ( 613) 1125 104.9 7.1e-22
XP_016884144 (OMIM: 133450,612219) PREDICTED: RNA- ( 612) 1122 104.7 8.3e-22
XP_016884145 (OMIM: 133450,612219) PREDICTED: RNA- ( 611) 1120 104.5 9.3e-22
XP_016884149 (OMIM: 133450,612219) PREDICTED: RNA- ( 597) 1074 100.8 1.2e-20
XP_016884136 (OMIM: 133450,612219) PREDICTED: RNA- ( 651) 1066 100.3 1.9e-20
XP_016884135 (OMIM: 133450,612219) PREDICTED: RNA- ( 652) 1066 100.3 1.9e-20
XP_016884134 (OMIM: 133450,612219) PREDICTED: RNA- ( 652) 1065 100.2 2e-20
XP_011528301 (OMIM: 133450,612219) PREDICTED: RNA- ( 653) 1065 100.2 2e-20
XP_016884150 (OMIM: 133450,612219) PREDICTED: RNA- ( 587) 1060 99.7 2.5e-20
NP_001156757 (OMIM: 133450,612219) RNA-binding pro ( 655) 1060 99.8 2.7e-20
XP_011528300 (OMIM: 133450,612219) PREDICTED: RNA- ( 656) 1060 99.8 2.7e-20
NP_053733 (OMIM: 133450,612219) RNA-binding protei ( 661) 1060 99.8 2.7e-20
NP_005234 (OMIM: 133450,612219) RNA-binding protei ( 656) 1059 99.7 2.8e-20
XP_011528299 (OMIM: 133450,612219) PREDICTED: RNA- ( 657) 1059 99.7 2.8e-20
XP_011528303 (OMIM: 133450,612219) PREDICTED: RNA- ( 614) 1056 99.4 3.2e-20
XP_005261447 (OMIM: 133450,612219) PREDICTED: RNA- ( 613) 1054 99.3 3.6e-20
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 1051 98.9 3.8e-20
XP_016884142 (OMIM: 133450,612219) PREDICTED: RNA- ( 614) 1053 99.2 3.8e-20
XP_016884141 (OMIM: 133450,612219) PREDICTED: RNA- ( 615) 1053 99.2 3.8e-20
XP_016884140 (OMIM: 133450,612219) PREDICTED: RNA- ( 615) 1052 99.1 4e-20
XP_016884139 (OMIM: 133450,612219) PREDICTED: RNA- ( 616) 1052 99.1 4e-20
XP_016884146 (OMIM: 133450,612219) PREDICTED: RNA- ( 601) 981 93.4 2e-18
XP_016884133 (OMIM: 133450,612219) PREDICTED: RNA- ( 668) 982 93.6 2e-18
XP_011528298 (OMIM: 133450,612219) PREDICTED: RNA- ( 669) 982 93.6 2e-18
XP_005261446 (OMIM: 133450,612219) PREDICTED: RNA- ( 669) 981 93.5 2.2e-18
XP_011528297 (OMIM: 133450,612219) PREDICTED: RNA- ( 670) 981 93.5 2.2e-18
XP_011528304 (OMIM: 133450,612219) PREDICTED: RNA- ( 597) 841 82.2 4.7e-15
XP_016884155 (OMIM: 133450,612219) PREDICTED: RNA- ( 317) 640 65.8 2.2e-10
XP_016884154 (OMIM: 133450,612219) PREDICTED: RNA- ( 317) 640 65.8 2.2e-10
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 592 62.0 3.2e-09
XP_016884153 (OMIM: 133450,612219) PREDICTED: RNA- ( 330) 562 59.6 1.7e-08
XP_011507833 (OMIM: 616284) PREDICTED: filaggrin-2 (2239) 486 54.7 3.4e-06
NP_001014364 (OMIM: 616284) filaggrin-2 [Homo sapi (2391) 486 54.8 3.5e-06
NP_001009931 (OMIM: 616293) hornerin [Homo sapiens (2850) 477 54.2 6.4e-06
>>NP_004951 (OMIM: 137070,608030,614782) RNA-binding pro (526 aa)
initn: 3790 init1: 3790 opt: 3790 Z-score: 1664.6 bits: 317.7 E(85289): 5.6e-86
Smith-Waterman score: 3790; 100.0% identity (100.0% similar) in 526 aa overlap (1-526:1-526)
10 20 30 40 50 60
pF1KB5 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
430 440 450 460 470 480
490 500 510 520
pF1KB5 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
490 500 510 520
>>NP_001164105 (OMIM: 137070,608030,614782) RNA-binding (525 aa)
initn: 3353 init1: 3353 opt: 3767 Z-score: 1654.6 bits: 315.8 E(85289): 2e-85
Smith-Waterman score: 3767; 99.6% identity (99.8% similar) in 526 aa overlap (1-526:1-525)
10 20 30 40 50 60
pF1KB5 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
:::. :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNS-YGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
420 430 440 450 460 470
490 500 510 520
pF1KB5 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
480 490 500 510 520
>>XP_011544083 (OMIM: 137070,608030,614782) PREDICTED: R (524 aa)
initn: 2663 init1: 2663 opt: 3760 Z-score: 1651.6 bits: 315.3 E(85289): 2.9e-85
Smith-Waterman score: 3760; 99.6% identity (99.6% similar) in 526 aa overlap (1-526:1-524)
10 20 30 40 50 60
pF1KB5 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
XP_011 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGG--GNYGQD
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
420 430 440 450 460 470
490 500 510 520
pF1KB5 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
480 490 500 510 520
>>NP_001164408 (OMIM: 137070,608030,614782) RNA-binding (522 aa)
initn: 2633 init1: 2633 opt: 3740 Z-score: 1643.0 bits: 313.7 E(85289): 8.9e-85
Smith-Waterman score: 3740; 99.2% identity (99.2% similar) in 526 aa overlap (1-526:1-522)
10 20 30 40 50 60
pF1KB5 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGG----GGGNYGQD
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIES
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYD
420 430 440 450 460 470
490 500 510 520
pF1KB5 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
480 490 500 510 520
>>XP_005255290 (OMIM: 137070,608030,614782) PREDICTED: R (321 aa)
initn: 1913 init1: 1913 opt: 1913 Z-score: 856.7 bits: 167.5 E(85289): 5.6e-41
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 260 aa overlap (267-526:62-321)
240 250 260 270 280 290
pF1KB5 GGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENV
::::::::::::::::::::::::::::::
XP_005 AAAAVVVTTAAVVAMNPEVVEVAVEAEVAWGPRDQGSRHDSEQDNSDNNTIFVQGLGENV
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB5 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB5 KEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGG
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB5 GGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGR
220 230 240 250 260 270
480 490 500 510 520
pF1KB5 GGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
280 290 300 310 320
>>XP_011544084 (OMIM: 137070,608030,614782) PREDICTED: R (321 aa)
initn: 1913 init1: 1913 opt: 1913 Z-score: 856.7 bits: 167.5 E(85289): 5.6e-41
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 260 aa overlap (267-526:62-321)
240 250 260 270 280 290
pF1KB5 GGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENV
::::::::::::::::::::::::::::::
XP_011 AAAAVVVTTAAVVAMNPEVVEVAVEAEVAWGPRDQGSRHDSEQDNSDNNTIFVQGLGENV
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB5 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB5 KEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGG
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB5 GGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGR
220 230 240 250 260 270
480 490 500 510 520
pF1KB5 GGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
280 290 300 310 320
>>XP_016884151 (OMIM: 133450,612219) PREDICTED: RNA-bind (582 aa)
initn: 595 init1: 574 opt: 1267 Z-score: 575.3 bits: 116.2 E(85289): 2.7e-25
Smith-Waterman score: 1578; 47.8% identity (66.7% similar) in 601 aa overlap (1-521:1-577)
10 20 30 40
pF1KB5 MASNDYTQQ----ATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTD--------TS
:::.::. : :.:.:: .:: :::.: ..: ::::::. :.: :: :.
XP_016 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQ-TTQAYGQQSYGTYGQPTDVSYTQAQTTA
10 20 30 40 50
50 60 70 80 90
pF1KB5 GYGQSSY-SSYGQSQNTGYGTQSTPQGYGS-TGGYGS---------------SQSSQSSY
:::..: .:::: ::: : ..::.:.. . :::. : ..::.:
XP_016 TYGQTAYATSYGQPP-TGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAY
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB5 GQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNP
: : .::.:::::: .. . :: ::.: .:: : .::::: .:: : .:::::.::.
XP_016 GTQPAYPAYGQQPAATAPT-SY-SSTQPTSYDQ---SSYSQQNTYG-QPSSYGQQSSYGQ
120 130 140 150 160 170
160 170 180 190 200
pF1KB5 PQGYGQQ--NQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYG
..:::: ..: ..: .:.: :..:. ..: : .. :. .. : ::
XP_016 QSSYGQQPPTSYPPQTG---------SYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYG
180 190 200 210 220
210 220 230 240 250 260
pF1KB5 QQDRG----GRGRGGSGGGGGGGG-GGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNK
:.. : :..:. :: . : : ::..: ::. .::: :::::::...::::::
XP_016 QESGGFSGPGENRSMSGPDNRGRGRGGFDR--GGM---SRGGRGGGRGGMGAGERGGFNK
230 240 250 260 270
270 280 290 300 310
pF1KB5 FGGPRDQGSRHD-----SEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQ
::: :.: : . ...:::..:.::::...::....::.::: :..: ::.:::
XP_016 PGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQ
280 290 300 310 320 330
320 330 340 350 360 370
pF1KB5 PMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN--R
:::..: :.:::: ::.::::..:::.::::..:::::.:.:. .:::.: .. .: :
XP_016 PMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMR
340 350 360 370 380 390
380 390 400 410
pF1KB5 GGGNGRGGRG-----RGGPMGRGGYGGG----GSGGGGRGGFPSGG---------GGGGG
:: : ::: :::: : :: :: :. :: ::::: : :::.
XP_016 GGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNV
400 410 420 430 440 450
420 430 440 450 460 470
pF1KB5 QQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGG---GPGGSHMGGNYGDDRRGGR
:.:::::.:::: : :.::.::.::::: :::: : :: :. : ::::
XP_016 QHRAGDWQCPNPGCGNQNFAWRTECNQCGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGR
460 470 480 490 500 510
480 490 500 510 520
pF1KB5 GGYDRGGYRG-RGGDRGGFRGGRGGGD--------------RGGFG-PGKMDSRGEHRQD
:: ::::.:: :: ::::: ::: :: ::: : ::::: .:::::.
XP_016 GG-DRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMD-KGEHRQE
520 530 540 550 560 570
pF1KB5 RRERPY
:
XP_016 RRDRPY
580
>>NP_631961 (OMIM: 601574,612237) TATA-binding protein-a (592 aa)
initn: 693 init1: 693 opt: 1214 Z-score: 552.3 bits: 112.0 E(85289): 5e-24
Smith-Waterman score: 1429; 51.0% identity (66.8% similar) in 533 aa overlap (3-521:4-459)
10 20 30 40 50
pF1KB5 MASNDYTQQA--TQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQ--SSY
:..: :.. :::..: . .:::.: : ::::::.:.::.: ::: :.:
NP_631 MSDSGSYGQSGGEQQSYSTYGNPGSQGYGQAS------QSYSGYGQTTDSS-YGQNYSGY
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 SSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGS
::::::: .::. :.: ::: ... ::::.:: : . ::: : ::: :
NP_631 SSYGQSQ-SGYS-----QSY---GGYENQK--QSSYSQQP-YNNQGQQQNMES-SGSQG-
60 70 80 90
120 130 140 150 160 170
pF1KB5 SSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQG-YGQQNQYNSSSGGGGGGGGG
... :: .::.:: ::.:: ::..:. :: : .:..:...
NP_631 -GRAPSY---------DQPDYG-QQDSYDQQSGYDQHQGSYDEQSNYDQQHD--------
100 110 120 130 140
180 190 200 210 220 230
pF1KB5 GNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNR
.:.:.:.:. : . .:... :. . ::... :: ::: ::: :
NP_631 -SYSQNQQSYHS---QRENYSHHTQDDRRDVSRYGEDN---RGYGGSQGGG--------R
150 160 170 180
240 250 260 270 280 290
pF1KB5 SSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHD--SEQDNSDNNTIFVQGL
. :::. ::: :. :: :::::..::: :: : : : ::.:::::::::::::
NP_631 GRGGYDKDGRGPMTGSSGG----DRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGL
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB5 GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID
::.:. ..:...::::::::::::::.::::::::..::: :::::::::::::::::::
NP_631 GEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAID
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB5 WFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPS
::::::: :: ::::::::: .: ::::.: : ::::: ::::. : ::: :
NP_631 WFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQG-------RGGDP-
310 320 330 340 350
420 430 440 450 460
pF1KB5 GGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDG--PGGGP-GGSHMGGNYG
..::: ::::.: ::::. :: ::::. :.:. :.:: : .::. :
NP_631 ---------KSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERG
360 370 380 390 400
470 480 490 500 510 520
pF1KB5 DDRRGGRGGYDRGGYRG--RGGDRGGFRGGRGG--GDRGGFGPGKMDSRGEHRQDRRERP
:::::: ::::: : :: :: :.. :: :::.: : : : : . ::
NP_631 YRGRGGRGG-DRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGY
410 420 430 440 450 460
pF1KB5 Y
NP_631 GGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYG
470 480 490 500 510 520
>>XP_016884147 (OMIM: 133450,612219) PREDICTED: RNA-bind (600 aa)
initn: 717 init1: 562 opt: 1203 Z-score: 547.5 bits: 111.2 E(85289): 9.3e-24
Smith-Waterman score: 1603; 48.5% identity (68.6% similar) in 586 aa overlap (1-515:1-563)
10 20 30 40
pF1KB5 MASNDYTQQ----ATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTD--------TS
:::.::. : :.:.:: .:: :::.: ..: ::::::. :.: :: :.
XP_016 MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTA
10 20 30 40 50 60
50 60 70 80 90
pF1KB5 GYGQSSY-SSYGQSQNTGYGTQSTPQGYGS-TGGYGS---------------SQSSQSSY
:::..: .:::: ::: : ..::.:.. . :::. : ..::.:
XP_016 TYGQTAYATSYGQPP-TGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAY
70 80 90 100 110
100 110 120 130 140 150
pF1KB5 GQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNP
: : .::.:::::: .. . :: ::.: .:: : .::::: .:: : .:::::.::.
XP_016 GTQPAYPAYGQQPAATAPT-SY-SSTQPTSYDQ---SSYSQQNTYG-QPSSYGQQSSYGQ
120 130 140 150 160 170
160 170 180 190 200
pF1KB5 PQGYGQQ--NQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYG
..:::: ..: ..: .:.: :..:. ..: : .. :. .. : ::
XP_016 QSSYGQQPPTSYPPQTG---------SYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYG
180 190 200 210 220
210 220 230 240 250 260
pF1KB5 QQDRG----GRGRGGSGGGGGGGG-GGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNK
:.. : :..:. :: . : : ::..: ::. .::: :::::::...::::::
XP_016 QESGGFSGPGENRSMSGPDNRGRGRGGFDR--GGM---SRGGRGGGRGGMGAGERGGFNK
230 240 250 260 270
270 280 290 300 310
pF1KB5 FGGPRDQGSRHD-----SEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQ
::: :.: : . ...:::..:.::::...::....::.::: :..: ::.:::
XP_016 PGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQ
280 290 300 310 320 330
320 330 340 350 360 370
pF1KB5 PMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN--R
:::..: :.:::: ::.::::..:::.::::..:::::.:.:. .:::.: .. .: :
XP_016 PMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMR
340 350 360 370 380 390
380 390 400 410
pF1KB5 GGGNGRGGRG-----RGGPMGRGGYGGG----GSGGGGRGGFPSGG---------GGGGG
:: : ::: :::: : :: :: :. :: ::::: : :::.
XP_016 GGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNV
400 410 420 430 440 450
420 430 440 450 460 470
pF1KB5 QQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDG----PGGGPGGSHMGGNYGDDRRGG
:.:::::.:::: : :.::.::.::::::::::.: : :::.. :. : :::
XP_016 QHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGG-MRGG
460 470 480 490 500 510
480 490 500 510 520
pF1KB5 RGG-YDRGG----YRG-RGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
::: .:::: .:: ::::::::::::: :::::: :. . :
XP_016 RGGLMDRGGPGGMFRGGRGGDRGGFRGGRGM-DRGGFGGGRRGGPGGPPGPLMEQMGGRR
520 530 540 550 560 570
XP_016 GGRGGPGKMDKGEHRQERRDRPY
580 590 600
>>NP_003478 (OMIM: 601574,612237) TATA-binding protein-a (589 aa)
initn: 699 init1: 699 opt: 1202 Z-score: 547.1 bits: 111.1 E(85289): 9.7e-24
Smith-Waterman score: 1410; 50.3% identity (65.9% similar) in 533 aa overlap (3-521:4-456)
10 20 30 40 50
pF1KB5 MASNDYTQQA--TQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQ--SSY
:..: :.. :::..: . .:::.: : ::::::.:.::.: ::: :.:
NP_003 MSDSGSYGQSGGEQQSYSTYGNPGSQGYGQAS------QSYSGYGQTTDSS-YGQNYSGY
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 SSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGS
:::::: . .:: :: ... ::::.:: : . ::: : ::: :
NP_003 SSYGQSYSQSYG------------GYENQK--QSSYSQQP-YNNQGQQQNMES-SGSQG-
60 70 80 90
120 130 140 150 160 170
pF1KB5 SSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQG-YGQQNQYNSSSGGGGGGGGG
... :: .::.:: ::.:: ::..:. :: : .:..:...
NP_003 -GRAPSY---------DQPDYG-QQDSYDQQSGYDQHQGSYDEQSNYDQQHD--------
100 110 120 130
180 190 200 210 220 230
pF1KB5 GNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNR
.:.:.:.:. : . .:... :. . ::... :: ::: ::: :
NP_003 -SYSQNQQSYHS---QRENYSHHTQDDRRDVSRYGEDN---RGYGGSQGGG--------R
140 150 160 170 180
240 250 260 270 280 290
pF1KB5 SSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHD--SEQDNSDNNTIFVQGL
. :::. ::: :. :: :::::..::: :: : : : ::.:::::::::::::
NP_003 GRGGYDKDGRGPMTGSSGG----DRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGL
190 200 210 220 230
300 310 320 330 340 350
pF1KB5 GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID
::.:. ..:...::::::::::::::.::::::::..::: :::::::::::::::::::
NP_003 GEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAID
240 250 260 270 280 290
360 370 380 390 400 410
pF1KB5 WFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPS
::::::: :: ::::::::: .: ::::.: : ::::: ::::. : ::: :
NP_003 WFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQG-------RGGDP-
300 310 320 330 340 350
420 430 440 450 460
pF1KB5 GGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDG--PGGGP-GGSHMGGNYG
..::: ::::.: ::::. :: ::::. :.:. :.:: : .::. :
NP_003 ---------KSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERG
360 370 380 390 400
470 480 490 500 510 520
pF1KB5 DDRRGGRGGYDRGGYRG--RGGDRGGFRGGRGG--GDRGGFGPGKMDSRGEHRQDRRERP
:::::: ::::: : :: :: :.. :: :::.: : : : : . ::
NP_003 YRGRGGRGG-DRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGY
410 420 430 440 450 460
pF1KB5 Y
NP_003 GGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYG
470 480 490 500 510 520
526 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:30:42 2016 done: Sat Nov 5 15:30:44 2016
Total Scan time: 11.200 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]