(Circular) (Six-base) MAPSORT of: pFN21AB7971.seq Check: 7507 from: 1 to: 5575 pFN21AB7971 5575 bp With 182 enzymes: SgfI * April 15, 2010 09:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3385 278 Size: 53 83 186 936 1849 2468 Fragments arranged by size: 2468 1849 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2149 2918 1937 Size: 212 769 4594 Fragments arranged by size: 4594 769 212 Acc65I G'GTAC_C Cuts at: 2896 2896 Size: 5575 AclI AA'CG_TT Cuts at: 1563 2874 3702 4075 1563 Size: 1311 828 373 3063 Fragments arranged by size: 3063 1311 828 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3638 5022 5290 1632 Size: 2006 1384 268 1917 Fragments arranged by size: 2006 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5378 AflIII A'CryG_T Cuts at: 1203 4474 5451 1203 Size: 3271 977 1327 Fragments arranged by size: 3271 1327 977 AgeI A'CCGG_T Cuts at: 4406 4406 Size: 5575 AhdI GACnn_n'nnGTC Cuts at: 4304 4304 Size: 5575 AleI CACnn'nnGTG Cuts at: 1166 2657 1166 Size: 1491 4084 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5575 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2739 2771 2739 Size: 32 5543 AlwNI CAG_nnn'CTG Cuts at: 2404 2453 3318 4890 2404 Size: 49 865 1572 3089 Fragments arranged by size: 3089 1572 865 49 ApaI G_GGCC'C Cuts at: 2619 2619 Size: 5575 ApaLI G'TGCA_C Cuts at: 3632 4788 3632 Size: 1156 4419 ApoI r'AATT_y Cuts at: 1493 2135 2884 3110 3262 5371 1493 Size: 642 749 226 152 2109 1697 Fragments arranged by size: 2109 1697 749 642 226 152 AseI AT'TA_AT Cuts at: 160 1032 4129 160 Size: 872 3097 1606 Fragments arranged by size: 3097 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5575 AvaI C'yCGr_G Cuts at: 1870 1943 2096 2900 1870 Size: 73 153 804 4545 Fragments arranged by size: 4545 804 153 73 BamHI G'GATC_C Cuts at: 2113 2698 2905 3272 2113 Size: 585 207 367 4416 Fragments arranged by size: 4416 585 367 207 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2896 4351 618 Size: 325 217 627 1109 1455 1842 Fragments arranged by size: 1842 1455 1109 627 325 217 BanII G_rGCy'C Cuts at: 1391 2372 2619 2894 1391 Size: 981 247 275 4072 Fragments arranged by size: 4072 981 275 247 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2238 928 Size: 971 339 4265 Fragments arranged by size: 4265 971 339 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3766 3800 1903 Size: 34 1829 34 3678 Fragments arranged by size: 3678 1829 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2206 3467 4677 2206 Size: 1261 1210 3104 Fragments arranged by size: 3104 1261 1210 BclI T'GATC_A Cuts at: 1548 2167 1548 Size: 619 4956 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4186 136 Size: 107 122 71 631 605 2514 1525 Fragments arranged by size: 2514 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5570 5570 Size: 5575 BlpI GC'TnA_GC Cuts at: 2039 2992 2039 Size: 953 4622 Bme1580I G_kGCm'C Cuts at: 1790 2619 3636 4792 1790 Size: 829 1017 1156 2573 Fragments arranged by size: 2573 1156 1017 829 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5575 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2424 3306 4264 Size: 416 53 83 399 24 1007 882 958 Cuts at: 4264 442 Size: 1753 Fragments arranged by size: 1753 1007 958 882 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5575 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2484 2619 4235 1239 Size: 1245 135 1616 2579 Fragments arranged by size: 2579 1616 1245 135 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2784 3700 4565 4863 2784 Size: 916 865 298 3496 Fragments arranged by size: 3496 916 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4238 882 Size: 617 2739 2219 Fragments arranged by size: 2739 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3366 493 Size: 711 2162 2702 Fragments arranged by size: 2702 2162 711 BsaBI GATnn'nnATC Cuts at: 5569 5569 Size: 5575 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3382 3764 4399 275 Size: 53 83 186 936 1849 382 635 1451 Fragments arranged by size: 1849 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2076 4008 4406 4680 4827 5238 2076 Size: 1932 398 274 147 411 2413 Fragments arranged by size: 2413 1932 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2058 2088 2378 2408 1178 Size: 30 165 30 655 30 290 30 4345 Fragments arranged by size: 4345 655 290 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2342 2380 1186 Size: 1156 38 4381 Fragments arranged by size: 4381 1156 38 BseYI C'CCAG_C Cuts at: 2729 4778 5274 2729 Size: 2049 496 3030 Fragments arranged by size: 3030 2049 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2288 1163 Size: 573 552 4450 Fragments arranged by size: 4450 573 552 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3025 3786 4814 1540 Size: 275 186 1024 761 1028 2301 Fragments arranged by size: 2301 1028 1024 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2040 2372 3636 3721 4792 2040 Size: 332 1264 85 1071 2823 Fragments arranged by size: 2823 1264 1071 332 85 BsmI GAATG_Cn' Cuts at: 2298 3086 3179 2298 Size: 788 93 4694 Fragments arranged by size: 4694 788 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2040 2372 2619 2894 3636 3721 4792 Size: 399 250 332 247 275 742 85 1071 Cuts at: 4792 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 399 332 275 250 247 85 BspEI T'CCGG_A Cuts at: 2076 5238 2076 Size: 3162 2413 BspHI T'CATG_A Cuts at: 3464 5194 3464 Size: 1730 3845 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2930 844 Size: 2086 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3462 1394 Size: 429 1639 3507 Fragments arranged by size: 3507 1639 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4070 4244 65 Size: 1183 2822 174 1396 Fragments arranged by size: 2822 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4219 4406 1700 Size: 110 2409 187 2869 Fragments arranged by size: 2869 2409 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5575 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5575 BssSI C'ACGA_G Cuts at: 3635 4647 3635 Size: 1012 4563 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5575 BstBI TT'CG_AA Cuts at: 4379 4379 Size: 5575 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5575 BstYI r'GATC_y Cuts at: 1972 2113 2698 2905 3272 3657 3674 5126 5212 Size: 141 585 207 367 385 17 1452 86 Cuts at: 5212 5224 5570 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 585 385 367 346 207 141 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2338 513 Size: 552 939 334 3750 Fragments arranged by size: 3750 939 552 334 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4836 Fragments arranged by size: 4836 683 56 BtsI GCAGTG_nn' Cuts at: 2282 2664 3091 3885 3905 2282 Size: 382 427 794 20 3952 Fragments arranged by size: 3952 794 427 382 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5575 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5540 DraI TTT'AAA Cuts at: 2140 2879 2140 Size: 739 4836 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4582 809 Size: 507 3266 1802 Fragments arranged by size: 3266 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3022 3911 5540 Size: 54 1425 50 275 18 1192 889 1629 Cuts at: 5540 8 Size: 43 Fragments arranged by size: 1629 1425 1192 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3022 1537 Size: 275 1210 4090 Fragments arranged by size: 4090 1210 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2784 3505 1353 Size: 1431 721 3423 Fragments arranged by size: 3423 1431 721 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4162 4536 4682 387 Size: 1064 138 2573 374 146 1280 Fragments arranged by size: 2573 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2370 2370 Size: 5575 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2484 2619 3638 4235 5022 5290 1239 Size: 393 852 135 1019 597 787 268 1524 Fragments arranged by size: 1524 1019 852 787 597 393 268 135 EcoO109I rG'GnC_Cy Cuts at: 2010 2010 Size: 5575 EcoRI G'AATT_C Cuts at: 2884 3262 2884 Size: 378 5197 EcoRV GAT'ATC Cuts at: 2595 2595 Size: 5575 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2825 2825 Size: 5575 FspI TGC'GCA Cuts at: 4081 4081 Size: 5575 HaeII r_GCGC'y Cuts at: 1678 4722 1678 Size: 3044 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2058 2090 4216 4248 4290 Size: 32 135 32 486 32 2126 32 42 Cuts at: 4290 4322 1373 Size: 32 2626 Fragments arranged by size: 2626 2126 486 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2919 3165 669 Size: 988 281 981 246 3079 Fragments arranged by size: 3079 988 981 281 246 HindIII A'AGCT_T Cuts at: 748 2578 748 Size: 1830 3745 HpaI GTT'AAC Cuts at: 3165 3165 Size: 5575 KpnI G_GTAC'C Cuts at: 2900 2900 Size: 5575 MfeI C'AATT_G Cuts at: 3174 3174 Size: 5575 MluI A'CGCG_T Cuts at: 5451 5451 Size: 5575 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2034 2044 2782 4689 4873 1305 Size: 729 10 738 1907 184 2007 Fragments arranged by size: 2007 1907 738 729 184 10 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3753 Fragments arranged by size: 3753 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2657 3533 3892 4051 518 Size: 648 1491 876 359 159 2042 Fragments arranged by size: 2042 1491 876 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2991 3668 4816 5061 1606 Size: 1385 677 1148 245 2120 Fragments arranged by size: 2120 1385 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2338 513 Size: 552 939 334 3750 Fragments arranged by size: 3750 939 552 334 NdeI CA'TA_TG Cuts at: 387 387 Size: 5575 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5575 NotI GC'GGCC_GC Cuts at: 3022 3022 Size: 5575 NspI r_CATG'y Cuts at: 1132 1229 2933 4478 1132 Size: 97 1704 1545 2229 Fragments arranged by size: 2229 1704 1545 97 PasI CC'CwG_GG Cuts at: 1348 2473 1348 Size: 1125 4450 PciI A'CATG_T Cuts at: 4474 4474 Size: 5575 PflMI CCAn_nnn'nTGG Cuts at: 1108 2339 2853 1108 Size: 1231 514 3830 Fragments arranged by size: 3830 1231 514 PfoI T'CCnGG_A Cuts at: 2205 2205 Size: 5575 PmeI GTTT'AAAC Cuts at: 2879 2879 Size: 5575 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3644 3676 5157 5189 3644 Size: 32 1481 32 4030 Fragments arranged by size: 4030 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2010 2010 Size: 5575 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5575 PsiI TTA'TAA Cuts at: 3145 3145 Size: 5575 PspOMI G'GGCC_C Cuts at: 2615 2615 Size: 5575 PstI C_TGCA'G Cuts at: 830 2927 830 Size: 2097 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5575 SacI G_AGCT'C Cuts at: 2372 2372 Size: 5575 SalI G'TCGA_C Cuts at: 1936 2917 1936 Size: 981 4594 SbfI CC_TGCA'GG Cuts at: 2927 2927 Size: 5575 ScaI AGT'ACT Cuts at: 3823 5535 3823 Size: 1712 3863 SfcI C'TryA_G Cuts at: 826 1045 2923 4058 4739 4930 826 Size: 219 1878 1135 681 191 1471 Fragments arranged by size: 1878 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5575 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5575 SmaI CCC'GGG Cuts at: 1872 2902 1872 Size: 1030 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2799 3679 4580 4842 820 Size: 197 926 856 880 901 262 1553 Fragments arranged by size: 1553 926 901 880 856 262 197 SnaBI TAC'GTA Cuts at: 493 3366 493 Size: 2873 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5575 SphI G_CATG'C Cuts at: 1132 2933 1132 Size: 1801 3774 SspI AAT'ATT Cuts at: 5 52 3499 5 Size: 47 3447 2081 Fragments arranged by size: 3447 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5575 StyI C'CwwG_G Cuts at: 513 1065 2004 2338 2487 3014 513 Size: 552 939 334 149 527 3074 Fragments arranged by size: 3074 939 552 527 334 149 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3602 3619 3772 3957 4402 325 Size: 1255 2022 17 153 185 445 1498 Fragments arranged by size: 2022 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3821 5533 96 Size: 274 80 33 51 1443 1844 1712 138 Fragments arranged by size: 1844 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5535 5567 5535 Size: 32 5543 Tth111I GACn'n_nGTC Cuts at: 1316 2678 1316 Size: 1362 4213 XbaI T'CTAG_A Cuts at: 2911 2911 Size: 5575 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5575 XmaI C'CCGG_G Cuts at: 1870 2900 1870 Size: 1030 4545 XmnI GAAnn'nnTTC Cuts at: 3704 3704 Size: 5575 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3383 276 Size: 53 83 186 936 1849 2468 Fragments arranged by size: 2468 1849 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspXI PsrI PvuII RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI