(Circular) (Six-base) MAPSORT of: pFN21AB7957.seq Check: 2471 from: 1 to: 5488 pFN21AB7957 5488 bp With 182 enzymes: SgfI * April 15, 2010 09:28 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2129 2129 Size: 5488 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3298 278 Size: 53 83 186 936 1762 2468 Fragments arranged by size: 2468 1762 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2831 1937 Size: 894 4594 Acc65I G'GTAC_C Cuts at: 2809 2809 Size: 5488 AclI AA'CG_TT Cuts at: 1563 3615 3988 1563 Size: 2052 373 3063 Fragments arranged by size: 3063 2052 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2244 2706 3551 4935 5203 1632 Size: 612 462 845 1384 268 1917 Fragments arranged by size: 1917 1384 845 612 462 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5291 AflIII A'CryG_T Cuts at: 1203 4387 5364 1203 Size: 3184 977 1327 Fragments arranged by size: 3184 1327 977 AgeI A'CCGG_T Cuts at: 4319 4319 Size: 5488 AhdI GACnn_n'nnGTC Cuts at: 4217 4217 Size: 5488 AleI CACnn'nnGTG Cuts at: 1166 2114 1166 Size: 948 4540 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5488 AlwNI CAG_nnn'CTG Cuts at: 2518 3231 4803 2518 Size: 713 1572 3203 Fragments arranged by size: 3203 1572 713 ApaLI G'TGCA_C Cuts at: 3545 4701 3545 Size: 1156 4332 ApoI r'AATT_y Cuts at: 1493 2797 3023 3175 5284 1493 Size: 1304 226 152 2109 1697 Fragments arranged by size: 2109 1697 1304 226 152 AseI AT'TA_AT Cuts at: 160 1032 4042 160 Size: 872 3010 1606 Fragments arranged by size: 3010 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5488 AvaI C'yCGr_G Cuts at: 1870 1943 2168 2813 1870 Size: 73 225 645 4545 Fragments arranged by size: 4545 645 225 73 BamHI G'GATC_C Cuts at: 2451 2818 3185 2451 Size: 367 367 4754 Fragments arranged by size: 4754 367 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2809 4264 618 Size: 325 217 627 1022 1455 1842 Fragments arranged by size: 1842 1455 1022 627 325 217 BanII G_rGCy'C Cuts at: 1391 2574 2807 1391 Size: 1183 233 4072 Fragments arranged by size: 4072 1183 233 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4517 BbvCI CC'TCA_GC Cuts at: 2411 2738 2411 Size: 327 5161 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3679 3713 1903 Size: 34 1742 34 3678 Fragments arranged by size: 3678 1742 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3380 4590 3380 Size: 1210 4278 BclI T'GATC_A Cuts at: 1548 1548 Size: 5488 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4099 136 Size: 107 122 71 631 605 2427 1525 Fragments arranged by size: 2427 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5483 5483 Size: 5488 BlpI GC'TnA_GC Cuts at: 2905 2905 Size: 5488 Bme1580I G_kGCm'C Cuts at: 1790 3549 4705 1790 Size: 1759 1156 2573 Fragments arranged by size: 2573 1759 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5488 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3219 4177 442 Size: 416 53 83 399 24 1802 958 1753 Fragments arranged by size: 1802 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5488 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2788 2788 Size: 5488 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2367 2495 4148 1239 Size: 1128 128 1653 2579 Fragments arranged by size: 2579 1653 1128 128 Bpu10I CC'TnA_GC Cuts at: 2300 2411 2738 2300 Size: 111 327 5050 Fragments arranged by size: 5050 327 111 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2071 2549 3613 4478 4776 2071 Size: 478 1064 865 298 2783 Fragments arranged by size: 2783 1064 865 478 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2729 4151 882 Size: 617 1230 1422 2219 Fragments arranged by size: 2219 1422 1230 617 BsaAI yAC'GTr Cuts at: 493 1204 2263 3279 493 Size: 711 1059 1016 2702 Fragments arranged by size: 2702 1059 1016 711 BsaBI GATnn'nnATC Cuts at: 5482 5482 Size: 5488 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3295 3677 4312 275 Size: 53 83 186 936 1762 382 635 1451 Fragments arranged by size: 1762 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2433 3921 4319 4593 4740 5151 2433 Size: 1488 398 274 147 411 2770 Fragments arranged by size: 2770 1488 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5263 Fragments arranged by size: 5263 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2717 1186 Size: 1531 3957 BseYI C'CCAG_C Cuts at: 2018 2252 4691 5187 2018 Size: 234 2439 496 2319 Fragments arranged by size: 2439 2319 496 234 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2654 1163 Size: 573 918 3997 Fragments arranged by size: 3997 918 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2151 2938 3699 4727 1540 Size: 275 186 150 787 761 1028 2301 Fragments arranged by size: 2301 1028 787 761 275 186 150 BsiHKAI G_wGCw'C Cuts at: 3549 3634 4705 3549 Size: 85 1071 4332 Fragments arranged by size: 4332 1071 85 BsmI GAATG_Cn' Cuts at: 2999 3092 2999 Size: 93 5395 BsmBI CGTCTCn'nnnn_ Cuts at: 2194 2194 Size: 5488 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2574 2807 3549 3634 4705 1391 Size: 399 784 233 742 85 1071 2174 Fragments arranged by size: 2174 1071 784 742 399 233 85 BspEI T'CCGG_A Cuts at: 5151 5151 Size: 5488 BspHI T'CATG_A Cuts at: 3377 5107 3377 Size: 1730 3758 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2129 2843 844 Size: 1285 714 3489 Fragments arranged by size: 3489 1285 714 BsrBI CCG'CTC Cuts at: 1394 1823 2599 3375 1394 Size: 429 776 776 3507 Fragments arranged by size: 3507 776 776 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3983 4157 65 Size: 1183 2735 174 1396 Fragments arranged by size: 2735 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4132 4319 1700 Size: 110 2322 187 2869 Fragments arranged by size: 2869 2322 187 110 BsrGI T'GTAC_A Cuts at: 96 2478 96 Size: 2382 3106 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5488 BssSI C'ACGA_G Cuts at: 3548 4560 3548 Size: 1012 4476 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5488 BstBI TT'CG_AA Cuts at: 4292 4292 Size: 5488 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5488 BstXI CCAn_nnnn'nTGG Cuts at: 2116 2652 2116 Size: 536 4952 BstYI r'GATC_y Cuts at: 1972 2451 2818 3185 3570 3587 5039 5125 5137 Size: 479 367 367 385 17 1452 86 12 Cuts at: 5137 5483 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 479 385 367 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2085 2115 2278 513 Size: 552 939 81 30 163 3723 Fragments arranged by size: 3723 939 552 163 81 30 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4749 Fragments arranged by size: 4749 683 56 BtsI GCAGTG_nn' Cuts at: 2455 3004 3798 3818 2455 Size: 549 794 20 4125 Fragments arranged by size: 4125 794 549 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5488 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5453 DraI TTT'AAA Cuts at: 2792 2792 Size: 5488 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2218 2768 4495 809 Size: 507 902 550 1727 1802 Fragments arranged by size: 1802 1727 902 550 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2148 2265 2935 Size: 54 1425 50 275 18 318 117 670 Cuts at: 2935 3824 5453 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 670 318 275 117 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2148 2935 1537 Size: 275 336 787 4090 Fragments arranged by size: 4090 787 336 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2715 3418 1353 Size: 1362 703 3423 Fragments arranged by size: 3423 1362 703 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2396 2558 4075 4449 4595 387 Size: 1064 138 807 162 1517 374 146 1280 Fragments arranged by size: 1517 1280 1064 807 374 162 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2244 2367 2495 2706 3551 4148 4935 Size: 393 612 123 128 211 845 597 787 Cuts at: 4935 5203 1239 Size: 268 1524 Fragments arranged by size: 1524 845 787 612 597 393 268 211 128 123 EcoNI CCTnn'n_nnAGG Cuts at: 2564 2564 Size: 5488 EcoO109I rG'GnC_Cy Cuts at: 2075 2296 2352 2515 2075 Size: 221 56 163 5048 Fragments arranged by size: 5048 221 163 56 EcoRI G'AATT_C Cuts at: 2797 3175 2797 Size: 378 5110 FspI TGC'GCA Cuts at: 3994 3994 Size: 5488 HaeII r_GCGC'y Cuts at: 1678 4635 1678 Size: 2957 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2516 2548 4129 4161 4203 Size: 32 135 32 944 32 1581 32 42 Cuts at: 4203 4235 1373 Size: 32 2626 Fragments arranged by size: 2626 1581 944 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2832 3078 669 Size: 988 281 894 246 3079 Fragments arranged by size: 3079 988 894 281 246 HindIII A'AGCT_T Cuts at: 748 2047 748 Size: 1299 4189 HpaI GTT'AAC Cuts at: 3078 3078 Size: 5488 KpnI G_GTAC'C Cuts at: 2813 2813 Size: 5488 MfeI C'AATT_G Cuts at: 3087 3087 Size: 5488 MluI A'CGCG_T Cuts at: 5364 5364 Size: 5488 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4602 4786 1305 Size: 3297 184 2007 Fragments arranged by size: 3297 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2267 10 Size: 54 1425 343 435 3231 Fragments arranged by size: 3231 1425 435 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2114 3446 3805 3964 518 Size: 648 948 1332 359 159 2042 Fragments arranged by size: 2042 1332 948 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2904 3581 4729 4974 1606 Size: 1298 677 1148 245 2120 Fragments arranged by size: 2120 1298 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2085 2278 513 Size: 552 939 81 193 3723 Fragments arranged by size: 3723 939 552 193 81 NdeI CA'TA_TG Cuts at: 387 387 Size: 5488 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5488 NotI GC'GGCC_GC Cuts at: 2935 2935 Size: 5488 NspI r_CATG'y Cuts at: 1132 1229 2846 4391 1132 Size: 97 1617 1545 2229 Fragments arranged by size: 2229 1617 1545 97 PasI CC'CwG_GG Cuts at: 1348 2122 1348 Size: 774 4714 PciI A'CATG_T Cuts at: 4387 4387 Size: 5488 PflMI CCAn_nnn'nTGG Cuts at: 1108 2518 1108 Size: 1410 4078 PfoI T'CCnGG_A Cuts at: 2364 2727 2364 Size: 363 5125 PmeI GTTT'AAAC Cuts at: 2792 2792 Size: 5488 PmlI CAC'GTG Cuts at: 2263 2263 Size: 5488 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3557 3589 5070 5102 3557 Size: 32 1481 32 3943 Fragments arranged by size: 3943 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2075 2075 Size: 5488 PshAI GACnn'nnGTC Cuts at: 1613 2186 1613 Size: 573 4915 PsiI TTA'TAA Cuts at: 3058 3058 Size: 5488 PstI C_TGCA'G Cuts at: 830 2586 2840 830 Size: 1756 254 3478 Fragments arranged by size: 3478 1756 254 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5488 SalI G'TCGA_C Cuts at: 1936 2830 1936 Size: 894 4594 SbfI CC_TGCA'GG Cuts at: 2840 2840 Size: 5488 ScaI AGT'ACT Cuts at: 3736 5448 3736 Size: 1712 3776 SfcI C'TryA_G Cuts at: 826 1045 2446 2582 2836 3971 4652 4843 826 Size: 219 1401 136 254 1135 681 191 1471 Fragments arranged by size: 1471 1401 1135 681 254 219 191 136 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5488 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5488 SmaI CCC'GGG Cuts at: 1872 2815 1872 Size: 943 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2050 2564 3592 4493 4755 820 Size: 197 926 107 514 1028 901 262 1553 Fragments arranged by size: 1553 1028 926 901 514 262 197 107 SnaBI TAC'GTA Cuts at: 493 3279 493 Size: 2786 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5488 SphI G_CATG'C Cuts at: 1132 2846 1132 Size: 1714 3774 SspI AAT'ATT Cuts at: 5 52 3412 5 Size: 47 3360 2081 Fragments arranged by size: 3360 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5488 StyI C'CwwG_G Cuts at: 513 1065 2004 2065 2085 2278 2927 513 Size: 552 939 61 20 193 649 3074 Fragments arranged by size: 3074 939 649 552 193 61 20 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2271 3515 3532 3685 3870 4315 325 Size: 1255 691 1244 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1244 691 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2478 3734 5446 Size: 274 80 33 51 1443 501 1256 1712 Cuts at: 5446 96 Size: 138 Fragments arranged by size: 1712 1443 1256 501 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5448 5480 5448 Size: 32 5456 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5488 XbaI T'CTAG_A Cuts at: 2824 2824 Size: 5488 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2260 2260 Size: 5488 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5488 XmaI C'CCGG_G Cuts at: 1870 2813 1870 Size: 943 4545 XmnI GAAnn'nnTTC Cuts at: 3617 3617 Size: 5488 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3296 276 Size: 53 83 186 936 1762 2468 Fragments arranged by size: 2468 1762 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BsiWI BstZ17I Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI