Restriction map for
pFN21AB6959
(Circular) (Six-base) MAPSORT of: pFN21AB6959.seq Check: 5274 from: 1 to: 5344
pFN21AB6959 5344 bp
With 182 enzymes: SgfI *
April 15, 2010 09:28 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3154 278
Size: 53 83 186 936 1618 2468
Fragments arranged by size:
2468 1618 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2687 1937
Size: 750 4594
Acc65I G'GTAC_C
Cuts at: 2223 2665 2223
Size: 442 4902
AclI AA'CG_TT
Cuts at: 1563 3471 3844 1563
Size: 1908 373 3063
Fragments arranged by size:
3063 1908 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2345 2367 3407 4791 5059 1632
Size: 713 22 1040 1384 268 1917
Fragments arranged by size:
1917 1384 1040 713 268 22
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5147
AflIII A'CryG_T
Cuts at: 1203 4243 5220 1203
Size: 3040 977 1327
Fragments arranged by size:
3040 1327 977
AgeI A'CCGG_T
Cuts at: 4175 4175
Size: 5344
AhdI GACnn_n'nnGTC
Cuts at: 4073 4073
Size: 5344
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5344
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5344
AlwNI CAG_nnn'CTG
Cuts at: 3087 4659 3087
Size: 1572 3772
ApaI G_GGCC'C
Cuts at: 2269 2269
Size: 5344
ApaLI G'TGCA_C
Cuts at: 3401 4557 3401
Size: 1156 4188
ApoI r'AATT_y
Cuts at: 1493 2653 2879 3031 5140 1493
Size: 1160 226 152 2109 1697
Fragments arranged by size:
2109 1697 1160 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3898 160
Size: 872 2866 1606
Fragments arranged by size:
2866 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5344
AvaI C'yCGr_G
Cuts at: 1870 1943 2400 2669 1870
Size: 73 457 269 4545
Fragments arranged by size:
4545 457 269 73
BamHI G'GATC_C
Cuts at: 2674 3041 2674
Size: 367 4977
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2174 2223 2665 4120 618
Size: 325 217 627 387 49 442 1455 1842
Fragments arranged by size:
1842 1455 627 442 387 325 217 49
BanII G_rGCy'C
Cuts at: 1391 2269 2334 2663 1391
Size: 878 65 329 4072
Fragments arranged by size:
4072 878 329 65
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2032 2084 928
Size: 971 133 52 4188
Fragments arranged by size:
4188 971 133 52
BbvCI CC'TCA_GC
Cuts at: 2390 2467 2390
Size: 77 5267
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2119 2153 2623 2657 3535 3569 1903
Size: 34 182 34 470 34 878 34 3678
Fragments arranged by size:
3678 878 470 182 34 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3236 4446 3236
Size: 1210 4134
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5344
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3955 136
Size: 107 122 71 631 605 2283 1525
Fragments arranged by size:
2283 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2196 5339 2196
Size: 3143 2201
BlpI GC'TnA_GC
Cuts at: 2761 2761
Size: 5344
Bme1580I G_kGCm'C
Cuts at: 1790 2177 2269 2412 2590 3405 4561 1790
Size: 387 92 143 178 815 1156 2573
Fragments arranged by size:
2573 1156 815 387 178 143 92
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5344
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3075 4033 442
Size: 416 53 83 399 24 1658 958 1753
Fragments arranged by size:
1753 1658 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 2498 1056
Size: 1442 3902
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2237 2480 4004 1239
Size: 998 243 1524 2579
Fragments arranged by size:
2579 1524 998 243
Bpu10I CC'TnA_GC
Cuts at: 2390 2467 2390
Size: 77 5267
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3469 4334 4632 3469
Size: 865 298 4181
Fragments arranged by size:
4181 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2456 4007 882
Size: 617 957 1551 2219
Fragments arranged by size:
2219 1551 957 617
BsaAI yAC'GTr
Cuts at: 493 1204 3135 493
Size: 711 1931 2702
Fragments arranged by size:
2702 1931 711
BsaBI GATnn'nnATC
Cuts at: 5338 5338
Size: 5344
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3151 3533 4168 275
Size: 53 83 186 936 1618 382 635 1451
Fragments arranged by size:
1618 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2559 3777 4175 4449 4596 5007 2559
Size: 1218 398 274 147 411 2896
Fragments arranged by size:
2896 1218 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5119
Fragments arranged by size:
5119 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2432 1186
Size: 1246 4098
BseYI C'CCAG_C
Cuts at: 4547 5043 4547
Size: 496 4848
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2277 1163
Size: 573 541 4230
Fragments arranged by size:
4230 573 541
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2358 2794 3555 4583 1540
Size: 275 186 357 436 761 1028 2301
Fragments arranged by size:
2301 1028 761 436 357 275 186
BsiHKAI G_wGCw'C
Cuts at: 2334 3405 3490 4561 2334
Size: 1071 85 1071 3117
Fragments arranged by size:
3117 1071 1071 85
BsmI GAATG_Cn'
Cuts at: 2855 2948 2855
Size: 93 5251
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2177 2269 2334 2412 2590 2663 3405
Size: 399 387 92 65 78 178 73 742
Cuts at: 3405 3490 4561 1391
Size: 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 387 178 92 85
78 73 65
BspEI T'CCGG_A
Cuts at: 2559 5007 2559
Size: 2448 2896
BspHI T'CATG_A
Cuts at: 3233 4963 3233
Size: 1730 3614
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2699 844
Size: 1855 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2221 3231 1394
Size: 429 398 1010 3507
Fragments arranged by size:
3507 1010 429 398
BsrDI GCAATG_nn'
Cuts at: 65 1248 2113 3839 4013 65
Size: 1183 865 1726 174 1396
Fragments arranged by size:
1726 1396 1183 865 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3988 4175 1700
Size: 110 2178 187 2869
Fragments arranged by size:
2869 2178 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5344
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5344
BssSI C'ACGA_G
Cuts at: 2369 3404 4416 2369
Size: 1035 1012 3297
Fragments arranged by size:
3297 1035 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5344
BstBI TT'CG_AA
Cuts at: 4148 4148
Size: 5344
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5344
BstXI CCAn_nnnn'nTGG
Cuts at: 2578 2578
Size: 5344
BstYI r'GATC_y
Cuts at: 1972 2196 2674 3041 3426 3443 4895 4981 4993
Size: 224 478 367 385 17 1452 86 12
Cuts at: 4993 5339 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 478 385 367 346 224 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3853
Fragments arranged by size:
3853 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2332 487
Size: 683 56 1106 3499
Fragments arranged by size:
3499 1106 683 56
BtsI GCAGTG_nn'
Cuts at: 2265 2590 2860 3654 3674 2265
Size: 325 270 794 20 3935
Fragments arranged by size:
3935 794 325 270 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5344
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5309
DraI TTT'AAA
Cuts at: 2648 2648
Size: 5344
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4351 809
Size: 507 3035 1802
Fragments arranged by size:
3035 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2791 3680 5309
Size: 54 1425 50 275 18 961 889 1629
Cuts at: 5309 8
Size: 43
Fragments arranged by size:
1629 1425 961 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2791 1537
Size: 275 979 4090
Fragments arranged by size:
4090 979 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2459 2615 3274 1353
Size: 1106 156 659 3423
Fragments arranged by size:
3423 1106 659 156
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3931 4305 4451 387
Size: 1064 138 2342 374 146 1280
Fragments arranged by size:
2342 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2332 2332
Size: 5344
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2237 2345 2367 2480 3407 4004 4791
Size: 393 605 108 22 113 927 597 787
Cuts at: 4791 5059 1239
Size: 268 1524
Fragments arranged by size:
1524 927 787 605 597 393 268 113
108 22
EcoNI CCTnn'n_nnAGG
Cuts at: 2393 2393
Size: 5344
EcoO109I rG'GnC_Cy
Cuts at: 2265 2266 2625 2265
Size: 1 359 4984
Fragments arranged by size:
4984 359 1
EcoRI G'AATT_C
Cuts at: 2653 3031 2653
Size: 378 4966
FspI TGC'GCA
Cuts at: 3850 3850
Size: 5344
HaeII r_GCGC'y
Cuts at: 1678 4491 1678
Size: 2813 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3985 4017 4059 4091 1373
Size: 32 135 32 2413 32 42 32 2626
Fragments arranged by size:
2626 2413 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2688 2934 669
Size: 988 281 750 246 3079
Fragments arranged by size:
3079 988 750 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5344
HpaI GTT'AAC
Cuts at: 2934 2934
Size: 5344
KpnI G_GTAC'C
Cuts at: 2227 2669 2227
Size: 442 4902
MfeI C'AATT_G
Cuts at: 2943 2943
Size: 5344
MluI A'CGCG_T
Cuts at: 5220 5220
Size: 5344
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4458 4642 1305
Size: 3153 184 2007
Fragments arranged by size:
3153 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3522
Fragments arranged by size:
3522 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2165 2369 3302 3661 3820 518
Size: 648 999 204 933 359 159 2042
Fragments arranged by size:
2042 999 933 648 359 204 159
MspA1I CmG'CkG
Cuts at: 1606 2180 2210 2760 3437 4585 4830 1606
Size: 574 30 550 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 574 550 245 30
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3853
Fragments arranged by size:
3853 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5344
NheI G'CTAG_C
Cuts at: 1052 2494 1052
Size: 1442 3902
NotI GC'GGCC_GC
Cuts at: 2791 2791
Size: 5344
NspI r_CATG'y
Cuts at: 1132 1229 2702 4247 1132
Size: 97 1473 1545 2229
Fragments arranged by size:
2229 1545 1473 97
PasI CC'CwG_GG
Cuts at: 1348 2612 1348
Size: 1264 4080
PciI A'CATG_T
Cuts at: 4243 4243
Size: 5344
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5344
PfoI T'CCnGG_A
Cuts at: 2457 2457
Size: 5344
PmeI GTTT'AAAC
Cuts at: 2648 2648
Size: 5344
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3413 3445 4926 4958 3413
Size: 32 1481 32 3799
Fragments arranged by size:
3799 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5344
PsiI TTA'TAA
Cuts at: 2031 2914 2031
Size: 883 4461
PspOMI G'GGCC_C
Cuts at: 2265 2265
Size: 5344
PstI C_TGCA'G
Cuts at: 830 2696 830
Size: 1866 3478
PvuI CG_AT'CG
Cuts at: 2001 2358 2001
Size: 357 4987
PvuII CAG'CTG
Cuts at: 2210 2210
Size: 5344
SacI G_AGCT'C
Cuts at: 2334 2334
Size: 5344
SalI G'TCGA_C
Cuts at: 1936 2686 1936
Size: 750 4594
SapI GCTCTTCn'nnn_
Cuts at: 2459 2459
Size: 5344
SbfI CC_TGCA'GG
Cuts at: 2696 2696
Size: 5344
ScaI AGT'ACT
Cuts at: 3592 5304 3592
Size: 1712 3632
SfcI C'TryA_G
Cuts at: 826 1045 2692 3827 4508 4699 826
Size: 219 1647 1135 681 191 1471
Fragments arranged by size:
1647 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5344
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5344
SmaI CCC'GGG
Cuts at: 1872 2402 2671 1872
Size: 530 269 4545
Fragments arranged by size:
4545 530 269
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3448 4349 4611 820
Size: 197 926 1505 901 262 1553
Fragments arranged by size:
1553 1505 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3135 493
Size: 2642 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5344
SphI G_CATG'C
Cuts at: 1132 2702 1132
Size: 1570 3774
SspI AAT'ATT
Cuts at: 5 52 3268 5
Size: 47 3216 2081
Fragments arranged by size:
3216 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5344
StyI C'CwwG_G
Cuts at: 513 1065 2004 2783 513
Size: 552 939 779 3074
Fragments arranged by size:
3074 939 779 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3371 3388 3541 3726 4171 325
Size: 1255 1791 17 153 185 445 1498
Fragments arranged by size:
1791 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3590 5302 96
Size: 274 80 33 51 1443 1613 1712 138
Fragments arranged by size:
1712 1613 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5304 5336 5304
Size: 32 5312
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5344
XbaI T'CTAG_A
Cuts at: 2680 2680
Size: 5344
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5344
XmaI C'CCGG_G
Cuts at: 1870 2400 2669 1870
Size: 530 269 4545
Fragments arranged by size:
4545 530 269
XmnI GAAnn'nnTTC
Cuts at: 3473 3473
Size: 5344
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3152 276
Size: 53 83 186 936 1618 2468
Fragments arranged by size:
2468 1618 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FspI
HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI
MmeI MscI MslI MspA1I NcoI NdeI NheI NotI
NspI PasI PciI PflMI PfoI PmeI PpiI PshAI
PsiI PspOMI PstI PvuI PvuII SacI SalI SapI
SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI
SpeI SphI SspI StuI StyI TaqII TatI TstI
Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoRV FalI
FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI
PacI PmlI PpuMI PspXI PsrI RsrII SacII SanDI
SexAI SfiI SfoI SrfI SwaI XcmI