FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6866, 196 aa
  1>>>pF1KB6866 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2175+/-0.000645; mu= 10.7496+/- 0.039
 mean_var=108.1000+/-21.509, 0's: 0 Z-trim(114.5): 5  B-trim: 72 in 1/52
 Lambda= 0.123356
 statistics sampled from 15063 (15068) to 15063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.463), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS6582.1 SIT1 gene_id:27240|Hs108|chr9           ( 196) 1335 247.0 5.5e-66


>>CCDS6582.1 SIT1 gene_id:27240|Hs108|chr9                (196 aa)
 initn: 1335 init1: 1335 opt: 1335  Z-score: 1298.1  bits: 247.0 E(32554): 5.5e-66
Smith-Waterman score: 1335; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KB6 MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR
              130       140       150       160       170       180

              190      
pF1KB6 ASFPDQAYANSQPAAS
       ::::::::::::::::
CCDS65 ASFPDQAYANSQPAAS
              190      




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:07:50 2016 done: Sat Nov  5 14:07:51 2016
 Total Scan time:  2.360 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]