Result of FASTA (omim) for
pFN21AB5490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5490, 494 aa
1>>>pF1KB5490 494 - 494 aa - 494 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5126+/-0.000425; mu= 16.6268+/- 0.027
mean_var=66.3265+/-13.586, 0's: 0 Z-trim(110.4): 27 B-trim: 209 in 2/50
Lambda= 0.157482
statistics sampled from 18782 (18798) to 18782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.22), width: 16
Scan time: 8.990
The best scores are: opt bits E(85289)
NP_003350 (OMIM: 603370) UDP-glucose 6-dehydrogena ( 494) 3271 752.5 6.1e-217
XP_005262724 (OMIM: 603370) PREDICTED: UDP-glucose ( 507) 3271 752.5 6.2e-217
NP_001171630 (OMIM: 603370) UDP-glucose 6-dehydrog ( 397) 2612 602.8 5.9e-172
NP_001171629 (OMIM: 603370) UDP-glucose 6-dehydrog ( 427) 2247 519.9 5.8e-147
>>NP_003350 (OMIM: 603370) UDP-glucose 6-dehydrogenase i (494 aa)
initn: 3271 init1: 3271 opt: 3271 Z-score: 4015.8 bits: 752.5 E(85289): 6.1e-217
Smith-Waterman score: 3271; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
430 440 450 460 470 480
490
pF1KB5 KFSLQDPPNKKPKV
::::::::::::::
NP_003 KFSLQDPPNKKPKV
490
>>XP_005262724 (OMIM: 603370) PREDICTED: UDP-glucose 6-d (507 aa)
initn: 3271 init1: 3271 opt: 3271 Z-score: 4015.6 bits: 752.5 E(85289): 6.2e-217
Smith-Waterman score: 3271; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:14-507)
10 20 30 40
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWSSGLLIQDSTIMFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 PTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLK
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 AIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB5 AQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYL
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB5 CEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB5 SSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDG
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB5 AHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVS
430 440 450 460 470 480
470 480 490
pF1KB5 SKRIPYAPSGEIPKFSLQDPPNKKPKV
:::::::::::::::::::::::::::
XP_005 SKRIPYAPSGEIPKFSLQDPPNKKPKV
490 500
>>NP_001171630 (OMIM: 603370) UDP-glucose 6-dehydrogenas (397 aa)
initn: 2612 init1: 2612 opt: 2612 Z-score: 3208.1 bits: 602.8 E(85289): 5.9e-172
Smith-Waterman score: 2612; 100.0% identity (100.0% similar) in 397 aa overlap (98-494:1-397)
70 80 90 100 110 120
pF1KB5 NLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT
::::::::::::::::::::::::::::::
NP_001 MGKGRAADLKYIEACARRIVQNSNGYKIVT
10 20 30
130 140 150 160 170 180
pF1KB5 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB5 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB5 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB5 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
220 230 240 250 260 270
370 380 390 400 410 420
pF1KB5 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
280 290 300 310 320 330
430 440 450 460 470 480
pF1KB5 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
340 350 360 370 380 390
490
pF1KB5 PNKKPKV
:::::::
NP_001 PNKKPKV
>>NP_001171629 (OMIM: 603370) UDP-glucose 6-dehydrogenas (427 aa)
initn: 2246 init1: 2246 opt: 2247 Z-score: 2759.4 bits: 519.9 E(85289): 5.8e-147
Smith-Waterman score: 2700; 86.4% identity (86.4% similar) in 494 aa overlap (1-494:1-427)
10 20 30 40 50 60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
:::::::::::::::::::::::::::::
NP_001 VESCRGKNLFFSTNIDDAIKEADLVFISV-------------------------------
70 80
130 140 150 160 170 180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
::::::::::::::::::::::::
NP_001 ------------------------------------LSNPEFLAEGTAIKDLKNPDRVLI
90 100 110
190 200 210 220 230 240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
180 190 200 210 220 230
310 320 330 340 350 360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
240 250 260 270 280 290
370 380 390 400 410 420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
300 310 320 330 340 350
430 440 450 460 470 480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
360 370 380 390 400 410
490
pF1KB5 KFSLQDPPNKKPKV
::::::::::::::
NP_001 KFSLQDPPNKKPKV
420
494 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:02:09 2016 done: Sat Nov 5 13:02:10 2016
Total Scan time: 8.990 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]