Result of FASTA (ccds) for
pFN21AB5490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5490, 494 aa
1>>>pF1KB5490 494 - 494 aa - 494 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7427+/-0.000937; mu= 15.1251+/- 0.057
mean_var=63.2242+/-12.670, 0's: 0 Z-trim(103.6): 24 B-trim: 0 in 0/48
Lambda= 0.161299
statistics sampled from 7476 (7487) to 7476 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.23), width: 16
Scan time: 2.630
The best scores are: opt bits E(32554)
CCDS3455.1 UGDH gene_id:7358|Hs108|chr4 ( 494) 3271 770.2 0
CCDS54757.1 UGDH gene_id:7358|Hs108|chr4 ( 397) 2612 616.8 1.3e-176
CCDS54758.1 UGDH gene_id:7358|Hs108|chr4 ( 427) 2247 531.9 5.2e-151
>>CCDS3455.1 UGDH gene_id:7358|Hs108|chr4 (494 aa)
initn: 3271 init1: 3271 opt: 3271 Z-score: 4111.4 bits: 770.2 E(32554): 0
Smith-Waterman score: 3271; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
430 440 450 460 470 480
490
pF1KB5 KFSLQDPPNKKPKV
::::::::::::::
CCDS34 KFSLQDPPNKKPKV
490
>>CCDS54757.1 UGDH gene_id:7358|Hs108|chr4 (397 aa)
initn: 2612 init1: 2612 opt: 2612 Z-score: 3284.2 bits: 616.8 E(32554): 1.3e-176
Smith-Waterman score: 2612; 100.0% identity (100.0% similar) in 397 aa overlap (98-494:1-397)
70 80 90 100 110 120
pF1KB5 NLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT
::::::::::::::::::::::::::::::
CCDS54 MGKGRAADLKYIEACARRIVQNSNGYKIVT
10 20 30
130 140 150 160 170 180
pF1KB5 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB5 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB5 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB5 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
220 230 240 250 260 270
370 380 390 400 410 420
pF1KB5 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
280 290 300 310 320 330
430 440 450 460 470 480
pF1KB5 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
340 350 360 370 380 390
490
pF1KB5 PNKKPKV
:::::::
CCDS54 PNKKPKV
>>CCDS54758.1 UGDH gene_id:7358|Hs108|chr4 (427 aa)
initn: 2246 init1: 2246 opt: 2247 Z-score: 2824.6 bits: 531.9 E(32554): 5.2e-151
Smith-Waterman score: 2700; 86.4% identity (86.4% similar) in 494 aa overlap (1-494:1-427)
10 20 30 40 50 60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
:::::::::::::::::::::::::::::
CCDS54 VESCRGKNLFFSTNIDDAIKEADLVFISV-------------------------------
70 80
130 140 150 160 170 180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
::::::::::::::::::::::::
CCDS54 ------------------------------------LSNPEFLAEGTAIKDLKNPDRVLI
90 100 110
190 200 210 220 230 240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
180 190 200 210 220 230
310 320 330 340 350 360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
240 250 260 270 280 290
370 380 390 400 410 420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
300 310 320 330 340 350
430 440 450 460 470 480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
360 370 380 390 400 410
490
pF1KB5 KFSLQDPPNKKPKV
::::::::::::::
CCDS54 KFSLQDPPNKKPKV
420
494 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:02:08 2016 done: Sat Nov 5 13:02:09 2016
Total Scan time: 2.630 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]