FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6548, 392 aa
  1>>>pF1KB6548 392 - 392 aa - 392 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5786+/-0.00081; mu= 3.6125+/- 0.049
 mean_var=190.7963+/-37.602, 0's: 0 Z-trim(114.1): 4  B-trim: 11 in 1/52
 Lambda= 0.092852
 statistics sampled from 14699 (14701) to 14699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.452), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS1700.1 HS1BP3 gene_id:64342|Hs108|chr2         ( 392) 2589 358.7 5.3e-99


>>CCDS1700.1 HS1BP3 gene_id:64342|Hs108|chr2              (392 aa)
 initn: 2589 init1: 2589 opt: 2589  Z-score: 1890.8  bits: 358.7 E(32554): 5.3e-99
Smith-Waterman score: 2589; 99.7% identity (100.0% similar) in 392 aa overlap (1-392:1-392)

               10        20        30        40        50        60
pF1KB6 MQSPAVLVTSRRLQNAHTGLDLTVPQHQEVRGKMMSGHVEYQILVVTRLAAFKSAKHRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MQSPAVLVTSRRLQNAHTGLDLTVPQHQEVRGKMMSGHVEYQILVVTRLAAFKSAKHRPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DVVQFLVSKKYSEIEEFYQKLSSRYAAASLPPLPRKVLFVGESDIRERRAVFNEILRCVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DVVQFLVSKKYSEIEEFYQKLSSRYAAASLPPLPRKVLFVGESDIRERRAVFNEILRCVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KDAELAGSPELLEFLGTRSPGAAGLTSRDSSVLDGTDSQTGNDEEAFDFFEEQDQVAEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KDAELAGSPELLEFLGTRSPGAAGLTSRDSSVLDGTDSQTGNDEEAFDFFEEQDQVAEEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PPVQSLKGEDAEESLEEEEALDPLGIMRSKKPKKHPKVAVKAKPSPRLTIFDEEVDPDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PPVQSLKGEDAEESLEEEEALDPLGIMRSKKPKKHPKVAVKAKPSPRLTIFDEEVDPDEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LFGPGRKLSPQDPSEDVSSMDPLKLFDDPDLGGAIPLGDSLLLPAACESGGPTPSLSHRD
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS17 LFGPGRKLSPQDPSEDVSSVDPLKLFDDPDLGGAIPLGDSLLLPAACESGGPTPSLSHRD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ASKELFRVEEDLDQILNLGAEPKPKPQLKPKPPVAAKPVIPRKPAVPPKAGPAEAVAGQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ASKELFRVEEDLDQILNLGAEPKPKPQLKPKPPVAAKPVIPRKPAVPPKAGPAEAVAGQQ
              310       320       330       340       350       360

              370       380       390  
pF1KB6 KPQEQIQAMDEMDILQYIQDHDTPAQAAPSLF
       ::::::::::::::::::::::::::::::::
CCDS17 KPQEQIQAMDEMDILQYIQDHDTPAQAAPSLF
              370       380       390  




392 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:26:37 2016 done: Sat Nov  5 11:26:38 2016
 Total Scan time:  2.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]