Result of FASTA (omim) for
pFN21AB5822
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5822, 543 aa
1>>>pF1KB5822 543 - 543 aa - 543 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4505+/-0.000353; mu= -3.5372+/- 0.022
mean_var=303.5517+/-61.915, 0's: 0 Z-trim(124.1): 50 B-trim: 35 in 1/53
Lambda= 0.073614
statistics sampled from 45102 (45166) to 45102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.53), width: 16
Scan time: 11.620
The best scores are: opt bits E(85289)
NP_001161299 (OMIM: 600744) transcription factor E ( 490) 3244 357.8 4.5e-98
XP_005249468 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_005249469 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_006715275 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_011513218 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
NP_009093 (OMIM: 600744) transcription factor EB i ( 476) 3198 352.9 1.3e-96
XP_006715276 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_011513217 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
NP_001258873 (OMIM: 600744) transcription factor E ( 476) 3198 352.9 1.3e-96
NP_001258874 (OMIM: 600744) transcription factor E ( 476) 3198 352.9 1.3e-96
NP_001258872 (OMIM: 600744) transcription factor E ( 391) 2138 240.3 8.6e-63
NP_006512 (OMIM: 300854,314310) transcription fact ( 575) 1129 133.2 2.1e-30
NP_001269071 (OMIM: 300854,314310) transcription f ( 470) 1111 131.2 6.7e-30
XP_011514265 (OMIM: 604732) PREDICTED: transcripti ( 437) 811 99.4 2.5e-20
XP_011514266 (OMIM: 604732) PREDICTED: transcripti ( 437) 811 99.4 2.5e-20
XP_011514268 (OMIM: 604732) PREDICTED: transcripti ( 437) 811 99.4 2.5e-20
XP_011514267 (OMIM: 604732) PREDICTED: transcripti ( 437) 811 99.4 2.5e-20
XP_016861937 (OMIM: 103470,103500,156845,193510,61 ( 468) 770 95.0 5.4e-19
NP_001171896 (OMIM: 103470,103500,156845,193510,61 ( 468) 770 95.0 5.4e-19
XP_016861936 (OMIM: 103470,103500,156845,193510,61 ( 503) 770 95.1 5.7e-19
NP_937820 (OMIM: 103470,103500,156845,193510,61445 ( 504) 770 95.1 5.7e-19
XP_016861934 (OMIM: 103470,103500,156845,193510,61 ( 519) 770 95.1 5.8e-19
NP_006713 (OMIM: 103470,103500,156845,193510,61445 ( 519) 770 95.1 5.8e-19
NP_937802 (OMIM: 103470,103500,156845,193510,61445 ( 520) 770 95.1 5.8e-19
NP_937821 (OMIM: 103470,103500,156845,193510,61445 ( 357) 755 93.3 1.3e-18
NP_937801 (OMIM: 103470,103500,156845,193510,61445 ( 413) 755 93.4 1.5e-18
XP_011532028 (OMIM: 103470,103500,156845,193510,61 ( 464) 755 93.4 1.6e-18
NP_036384 (OMIM: 604732) transcription factor EC i ( 347) 728 90.5 9.4e-18
XP_016867364 (OMIM: 604732) PREDICTED: transcripti ( 347) 728 90.5 9.4e-18
NP_000239 (OMIM: 103470,103500,156845,193510,61445 ( 419) 706 88.2 5.5e-17
XP_011532027 (OMIM: 103470,103500,156845,193510,61 ( 470) 706 88.2 6e-17
XP_006713227 (OMIM: 103470,103500,156845,193510,61 ( 474) 706 88.2 6e-17
XP_011532025 (OMIM: 103470,103500,156845,193510,61 ( 509) 706 88.3 6.3e-17
XP_016861935 (OMIM: 103470,103500,156845,193510,61 ( 509) 706 88.3 6.3e-17
XP_005264812 (OMIM: 103470,103500,156845,193510,61 ( 510) 706 88.3 6.4e-17
XP_011532024 (OMIM: 103470,103500,156845,193510,61 ( 525) 706 88.3 6.5e-17
XP_016861933 (OMIM: 103470,103500,156845,193510,61 ( 525) 706 88.3 6.5e-17
XP_005264811 (OMIM: 103470,103500,156845,193510,61 ( 526) 706 88.3 6.5e-17
XP_011514274 (OMIM: 604732) PREDICTED: transcripti ( 287) 686 85.9 1.8e-16
XP_016867365 (OMIM: 604732) PREDICTED: transcripti ( 259) 669 84.1 5.8e-16
NP_001231512 (OMIM: 604732) transcription factor E ( 280) 669 84.1 6.1e-16
NP_001018068 (OMIM: 604732) transcription factor E ( 318) 669 84.2 6.7e-16
XP_016867363 (OMIM: 604732) PREDICTED: transcripti ( 408) 669 84.3 8.2e-16
XP_011514272 (OMIM: 604732) PREDICTED: transcripti ( 408) 669 84.3 8.2e-16
XP_016867366 (OMIM: 604732) PREDICTED: transcripti ( 239) 636 80.6 6.1e-15
XP_016867367 (OMIM: 604732) PREDICTED: transcripti ( 239) 636 80.6 6.1e-15
XP_011514271 (OMIM: 604732) PREDICTED: transcripti ( 418) 452 61.2 7.2e-09
>>NP_001161299 (OMIM: 600744) transcription factor EB is (490 aa)
initn: 3244 init1: 3244 opt: 3244 Z-score: 1881.8 bits: 357.8 E(85289): 4.5e-98
Smith-Waterman score: 3244; 100.0% identity (100.0% similar) in 483 aa overlap (61-543:8-490)
40 50 60 70 80 90
pF1KB5 VPVILASPCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRE
::::::::::::::::::::::::::::::
NP_001 MTASSGWEPAPAATMASRIGLRMQLMREQAQQEEQRE
10 20 30
100 110 120 130 140 150
pF1KB5 RMQQQAVMHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMQQQAVMHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYH
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 LQQSQHQKVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQSQHQKVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSP
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 MAMLHIGSNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMLHIGSNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTAS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 LVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIP
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 KANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQA
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 RVHGLPTTSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVHGLPTTSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPL
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 PTQPPSPFHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTQPPSPFHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLL
400 410 420 430 440 450
520 530 540
pF1KB5 PLASDPLLSTMSPEASKASSRRSSFSMEEGDVL
:::::::::::::::::::::::::::::::::
NP_001 PLASDPLLSTMSPEASKASSRRSSFSMEEGDVL
460 470 480 490
>>XP_005249468 (OMIM: 600744) PREDICTED: transcription f (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
XP_005 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
XP_005 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>XP_005249469 (OMIM: 600744) PREDICTED: transcription f (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
XP_005 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
XP_005 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>XP_006715275 (OMIM: 600744) PREDICTED: transcription f (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
XP_006 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
XP_006 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>XP_011513218 (OMIM: 600744) PREDICTED: transcription f (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
XP_011 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
XP_011 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>NP_009093 (OMIM: 600744) transcription factor EB isofo (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
NP_009 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
NP_009 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>XP_006715276 (OMIM: 600744) PREDICTED: transcription f (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
XP_006 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
XP_006 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>XP_011513217 (OMIM: 600744) PREDICTED: transcription f (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
XP_011 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
XP_011 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>NP_001258873 (OMIM: 600744) transcription factor EB is (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
NP_001 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
NP_001 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
>>NP_001258874 (OMIM: 600744) transcription factor EB is (476 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 1855.5 bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)
40 50 60 70 80 90
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
::::::::::::::::::::::::::::::
NP_001 MASRIGLRMQLMREQAQQEEQRERMQQQAV
10 20 30
100 110 120 130 140 150
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
400 410 420 430 440 450
520 530 540
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
::::::::::::::::::::::::::
NP_001 LSTMSPEASKASSRRSSFSMEEGDVL
460 470
543 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:26:17 2016 done: Sat Nov 5 10:26:18 2016
Total Scan time: 11.620 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]