Result of FASTA (omim) for
pFN21AB7970
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7970, 410 aa
1>>>pF1KB7970 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9094+/-0.000365; mu= 6.8890+/- 0.023
mean_var=190.3932+/-39.005, 0's: 0 Z-trim(120.4): 203 B-trim: 1849 in 1/53
Lambda= 0.092950
statistics sampled from 35327 (35569) to 35327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.417), width: 16
Scan time: 9.880
The best scores are: opt bits E(85289)
NP_060758 (OMIM: 613069) PHD finger protein 10 iso ( 498) 2822 390.6 4.4e-108
NP_579866 (OMIM: 613069) PHD finger protein 10 iso ( 496) 2795 387.0 5.4e-107
XP_016866487 (OMIM: 613069) PREDICTED: PHD finger ( 446) 1559 221.2 3.9e-57
XP_016877159 (OMIM: 601672) PREDICTED: zinc finger ( 378) 445 71.8 3.2e-12
NP_001267471 (OMIM: 601672) zinc finger protein DP ( 378) 445 71.8 3.2e-12
XP_016873591 (OMIM: 601671) PREDICTED: zinc finger ( 371) 441 71.2 4.6e-12
XP_016873590 (OMIM: 601671) PREDICTED: zinc finger ( 385) 441 71.3 4.8e-12
NP_006259 (OMIM: 601671) zinc finger protein ubi-d ( 391) 441 71.3 4.8e-12
NP_001317237 (OMIM: 601671) zinc finger protein ub ( 405) 441 71.3 4.9e-12
NP_001128628 (OMIM: 601670) zinc finger protein ne ( 332) 435 70.4 7.4e-12
XP_005259347 (OMIM: 601670) PREDICTED: zinc finger ( 388) 435 70.5 8.4e-12
NP_001128627 (OMIM: 601670) zinc finger protein ne ( 414) 435 70.5 8.8e-12
XP_005259349 (OMIM: 601670) PREDICTED: zinc finger ( 369) 431 69.9 1.2e-11
XP_005259346 (OMIM: 601670) PREDICTED: zinc finger ( 397) 431 69.9 1.2e-11
NP_001292807 (OMIM: 601408,616268) histone acetylt ( 815) 428 69.8 2.8e-11
XP_016871498 (OMIM: 603736,605880,606170) PREDICTE (1727) 432 70.6 3.3e-11
XP_016871497 (OMIM: 603736,605880,606170) PREDICTE (1781) 432 70.6 3.4e-11
XP_016871495 (OMIM: 603736,605880,606170) PREDICTE (1781) 432 70.6 3.4e-11
NP_001243398 (OMIM: 603736,605880,606170) histone (1781) 432 70.6 3.4e-11
XP_016871496 (OMIM: 603736,605880,606170) PREDICTE (1781) 432 70.6 3.4e-11
NP_001243397 (OMIM: 603736,605880,606170) histone (1890) 432 70.7 3.5e-11
XP_016871494 (OMIM: 603736,605880,606170) PREDICTE (1890) 432 70.7 3.5e-11
XP_016871493 (OMIM: 603736,605880,606170) PREDICTE (2019) 432 70.7 3.7e-11
XP_016871492 (OMIM: 603736,605880,606170) PREDICTE (2073) 432 70.7 3.8e-11
XP_016871489 (OMIM: 603736,605880,606170) PREDICTE (2073) 432 70.7 3.8e-11
XP_016871490 (OMIM: 603736,605880,606170) PREDICTE (2073) 432 70.7 3.8e-11
XP_016871491 (OMIM: 603736,605880,606170) PREDICTE (2073) 432 70.7 3.8e-11
NP_036462 (OMIM: 603736,605880,606170) histone ace (2073) 432 70.7 3.8e-11
XP_005269721 (OMIM: 603736,605880,606170) PREDICTE (2073) 432 70.7 3.8e-11
XP_016869353 (OMIM: 601408,616268) PREDICTED: hist (2004) 428 70.1 5.4e-11
XP_016869352 (OMIM: 601408,616268) PREDICTED: hist (2004) 428 70.1 5.4e-11
NP_006757 (OMIM: 601408,616268) histone acetyltran (2004) 428 70.1 5.4e-11
XP_011542961 (OMIM: 601408,616268) PREDICTED: hist (2041) 428 70.2 5.4e-11
XP_011542960 (OMIM: 601408,616268) PREDICTED: hist (2048) 428 70.2 5.4e-11
XP_011542959 (OMIM: 601408,616268) PREDICTED: hist (2048) 428 70.2 5.4e-11
XP_011542958 (OMIM: 601408,616268) PREDICTED: hist (2048) 428 70.2 5.4e-11
XP_016877161 (OMIM: 601672) PREDICTED: zinc finger ( 354) 309 53.5 9.5e-07
NP_004638 (OMIM: 601670) zinc finger protein neuro ( 380) 298 52.1 2.8e-06
XP_006723472 (OMIM: 601670) PREDICTED: zinc finger ( 242) 288 50.6 5.1e-06
XP_006723473 (OMIM: 601670) PREDICTED: zinc finger ( 242) 288 50.6 5.1e-06
XP_011525660 (OMIM: 601670) PREDICTED: zinc finger ( 342) 288 50.7 6.5e-06
XP_006723471 (OMIM: 601670) PREDICTED: zinc finger ( 396) 288 50.8 7.3e-06
XP_006723470 (OMIM: 601670) PREDICTED: zinc finger ( 398) 288 50.8 7.3e-06
NP_001276907 (OMIM: 601670) zinc finger protein ne ( 424) 288 50.8 7.7e-06
XP_011525659 (OMIM: 601670) PREDICTED: zinc finger ( 379) 284 50.2 1e-05
XP_011525658 (OMIM: 601670) PREDICTED: zinc finger ( 407) 284 50.2 1.1e-05
XP_011514756 (OMIM: 606833) PREDICTED: histone-lys (4678) 267 48.9 0.00032
XP_011537078 (OMIM: 147920,602113) PREDICTED: hist (5525) 268 49.1 0.00032
XP_006719679 (OMIM: 147920,602113) PREDICTED: hist (5536) 268 49.1 0.00033
NP_003473 (OMIM: 147920,602113) histone-lysine N-m (5537) 268 49.1 0.00033
>>NP_060758 (OMIM: 613069) PHD finger protein 10 isoform (498 aa)
initn: 2822 init1: 2822 opt: 2822 Z-score: 2061.4 bits: 390.6 E(85289): 4.4e-108
Smith-Waterman score: 2822; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:89-498)
10 20 30
pF1KB7 MLQEQVSEYLGVTSFKRKYPDLERRDLSHK
::::::::::::::::::::::::::::::
NP_060 TSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYPDLERRDLSHK
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB7 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB7 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB7 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB7 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
300 310 320 330 340 350
280 290 300 310 320 330
pF1KB7 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
360 370 380 390 400 410
340 350 360 370 380 390
pF1KB7 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
420 430 440 450 460 470
400 410
pF1KB7 QRAPPTPRKVGRRGKNSKEG
::::::::::::::::::::
NP_060 QRAPPTPRKVGRRGKNSKEG
480 490
>>NP_579866 (OMIM: 613069) PHD finger protein 10 isoform (496 aa)
initn: 2797 init1: 2680 opt: 2795 Z-score: 2041.9 bits: 387.0 E(85289): 5.4e-107
Smith-Waterman score: 2795; 99.5% identity (99.5% similar) in 410 aa overlap (1-410:89-496)
10 20 30
pF1KB7 MLQEQVSEYLGVTSFKRKYPDLERRDLSHK
:::::::::::::::::::: ::::::::
NP_579 TSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYP--ERRDLSHK
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB7 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB7 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB7 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB7 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
300 310 320 330 340 350
280 290 300 310 320 330
pF1KB7 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
360 370 380 390 400 410
340 350 360 370 380 390
pF1KB7 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
420 430 440 450 460 470
400 410
pF1KB7 QRAPPTPRKVGRRGKNSKEG
::::::::::::::::::::
NP_579 QRAPPTPRKVGRRGKNSKEG
480 490
>>XP_016866487 (OMIM: 613069) PREDICTED: PHD finger prot (446 aa)
initn: 1510 init1: 1510 opt: 1559 Z-score: 1146.7 bits: 221.2 E(85289): 3.9e-57
Smith-Waterman score: 2363; 87.3% identity (87.3% similar) in 410 aa overlap (1-410:89-446)
10 20 30
pF1KB7 MLQEQVSEYLGVTSFKRKYPDLERRDLSHK
::::::::::::::::::::::::::::::
XP_016 TSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYPDLERRDLSHK
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB7 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB7 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB7 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB7 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
:::::::::::::::::::::
XP_016 GDSDDGEDGRGDEKRKNKGTS---------------------------------------
300 310
280 290 300 310 320 330
pF1KB7 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------------PKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
320 330 340 350 360
340 350 360 370 380 390
pF1KB7 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
370 380 390 400 410 420
400 410
pF1KB7 QRAPPTPRKVGRRGKNSKEG
::::::::::::::::::::
XP_016 QRAPPTPRKVGRRGKNSKEG
430 440
>>XP_016877159 (OMIM: 601672) PREDICTED: zinc finger pro (378 aa)
initn: 416 init1: 296 opt: 445 Z-score: 340.3 bits: 71.8 E(85289): 3.2e-12
Smith-Waterman score: 445; 41.2% identity (67.6% similar) in 136 aa overlap (260-390:228-363)
230 240 250 260 270 280
pF1KB7 TSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP--KRSVLSKSVPGYKPKVI
:.: . .: .:. . : ::
XP_016 YVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVI
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB7 PNAICGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECK
:: : .:: :.. ::: :. : :. :..: ::::.::..:.... .::: :::.:::
XP_016 PNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK
260 270 280 290 300 310
350 360 370 380 390 400
pF1KB7 TCIICGQPHHEEEMMFCDMCDRGYHTFCVG--LGAIPSGRWICDCCQRAPPTPRKVGRRG
.::.:: .......::: :::::: .:.. .. : : : : :
XP_016 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQ
320 330 340 350 360 370
410
pF1KB7 KNSKEG
XP_016 A
>>NP_001267471 (OMIM: 601672) zinc finger protein DPF3 i (378 aa)
initn: 416 init1: 296 opt: 445 Z-score: 340.3 bits: 71.8 E(85289): 3.2e-12
Smith-Waterman score: 445; 41.2% identity (67.6% similar) in 136 aa overlap (260-390:228-363)
230 240 250 260 270 280
pF1KB7 TSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP--KRSVLSKSVPGYKPKVI
:.: . .: .:. . : ::
NP_001 YVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVI
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB7 PNAICGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECK
:: : .:: :.. ::: :. : :. :..: ::::.::..:.... .::: :::.:::
NP_001 PNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK
260 270 280 290 300 310
350 360 370 380 390 400
pF1KB7 TCIICGQPHHEEEMMFCDMCDRGYHTFCVG--LGAIPSGRWICDCCQRAPPTPRKVGRRG
.::.:: .......::: :::::: .:.. .. : : : : :
NP_001 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQ
320 330 340 350 360 370
410
pF1KB7 KNSKEG
NP_001 A
>>XP_016873591 (OMIM: 601671) PREDICTED: zinc finger pro (371 aa)
initn: 462 init1: 310 opt: 441 Z-score: 337.5 bits: 71.2 E(85289): 4.6e-12
Smith-Waterman score: 459; 33.2% identity (57.6% similar) in 238 aa overlap (180-390:117-354)
150 160 170 180 190 200
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
: . : : .:. :. . :.:. :
XP_016 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
90 100 110 120 130 140
210 220 230 240 250
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPP---DSQEDSFQGR-----
::.. .: :: : :.::.... . ... : .. : : ...:
XP_016 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDICGKRYKNRPGLSY
150 160 170 180 190 200
260 270 280 290 300
pF1KB7 ---------QKSKDKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKK-
....:: . : .:: .:: : ..:: : .:: .. :::
XP_016 HYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKT
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB7 GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCD
:. : :. ::.: :::::::..: ... .::: :::.::: : ::: .......:::
XP_016 GQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNICGTSENDDQLLFCD
270 280 290 300 310 320
370 380 390 400 410
pF1KB7 MCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSKEG
:::::: .:. ... : : : : :
XP_016 DCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS
330 340 350 360 370
>>XP_016873590 (OMIM: 601671) PREDICTED: zinc finger pro (385 aa)
initn: 462 init1: 310 opt: 441 Z-score: 337.3 bits: 71.3 E(85289): 4.8e-12
Smith-Waterman score: 453; 32.1% identity (54.8% similar) in 252 aa overlap (180-390:117-368)
150 160 170 180 190 200
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
: . : : .:. :. . :.:. :
XP_016 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
90 100 110 120 130 140
210 220 230 240 250
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPPDSQEDSFQGRQKSK----
::.. .: :: : :.::.... . ... : .. : . ..::. .. ::
XP_016 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDNSFKQKHTSKAPQR
150 160 170 180 190 200
260 270 280 290
pF1KB7 ---------------------------DKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAI
:: . : .:: .:: : ..::
XP_016 VCGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNY
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB7 CGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCII
: .:: .. ::: :. : :. ::.: :::::::..: ... .::: :::.::: : :
XP_016 CDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNI
270 280 290 300 310 320
360 370 380 390 400
pF1KB7 CGQPHHEEEMMFCDMCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSK
:: .......::: :::::: .:. ... : : : : :
XP_016 CGTSENDDQLLFCDDCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS
330 340 350 360 370 380
410
pF1KB7 EG
>>NP_006259 (OMIM: 601671) zinc finger protein ubi-d4 is (391 aa)
initn: 462 init1: 310 opt: 441 Z-score: 337.2 bits: 71.3 E(85289): 4.8e-12
Smith-Waterman score: 459; 33.2% identity (57.6% similar) in 238 aa overlap (180-390:137-374)
150 160 170 180 190 200
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
: . : : .:. :. . :.:. :
NP_006 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
110 120 130 140 150 160
210 220 230 240 250
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPP---DSQEDSFQGR-----
::.. .: :: : :.::.... . ... : .. : : ...:
NP_006 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDICGKRYKNRPGLSY
170 180 190 200 210 220
260 270 280 290 300
pF1KB7 ---------QKSKDKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKK-
....:: . : .:: .:: : ..:: : .:: .. :::
NP_006 HYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCD
:. : :. ::.: :::::::..: ... .::: :::.::: : ::: .......:::
NP_006 GQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNICGTSENDDQLLFCD
290 300 310 320 330 340
370 380 390 400 410
pF1KB7 MCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSKEG
:::::: .:. ... : : : : :
NP_006 DCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS
350 360 370 380 390
>>NP_001317237 (OMIM: 601671) zinc finger protein ubi-d4 (405 aa)
initn: 462 init1: 310 opt: 441 Z-score: 337.0 bits: 71.3 E(85289): 4.9e-12
Smith-Waterman score: 453; 32.1% identity (54.8% similar) in 252 aa overlap (180-390:137-388)
150 160 170 180 190 200
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
: . : : .:. :. . :.:. :
NP_001 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
110 120 130 140 150 160
210 220 230 240 250
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPPDSQEDSFQGRQKSK----
::.. .: :: : :.::.... . ... : .. : . ..::. .. ::
NP_001 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDNSFKQKHTSKAPQR
170 180 190 200 210 220
260 270 280 290
pF1KB7 ---------------------------DKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAI
:: . : .:: .:: : ..::
NP_001 VCGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNY
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB7 CGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCII
: .:: .. ::: :. : :. ::.: :::::::..: ... .::: :::.::: : :
NP_001 CDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNI
290 300 310 320 330 340
360 370 380 390 400
pF1KB7 CGQPHHEEEMMFCDMCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSK
:: .......::: :::::: .:. ... : : : : :
NP_001 CGTSENDDQLLFCDDCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS
350 360 370 380 390 400
410
pF1KB7 EG
>>NP_001128628 (OMIM: 601670) zinc finger protein neuro- (332 aa)
initn: 367 init1: 318 opt: 435 Z-score: 333.8 bits: 70.4 E(85289): 7.4e-12
Smith-Waterman score: 435; 39.0% identity (65.4% similar) in 159 aa overlap (240-392:168-319)
210 220 230 240 250 260
pF1KB7 DGDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQ----GRQKSKDKAATP
::: . . :. .: :. : .:
NP_001 KPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEENAERHALPFHRKNNHKQFYKELAWVP
140 150 160 170 180 190
270 280 290 300 310 320
pF1KB7 RKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCL
. .:. .:..: ::::. : .:: : :.: : :.:: :..: :::::::
NP_001 EA---QRKHTAKKAPD--GTVIPNGYCDFCLGG--SKKTGCPEDLISCADCGRSGHPSCL
200 210 220 230 240 250
330 340 350 360 370 380
pF1KB7 DMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVG--LGAIPSG
..:..... ..:: :::.:::.: .:: .......::: :::::: .:.. .. : :
NP_001 QFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEG
260 270 280 290 300 310
390 400 410
pF1KB7 RWICDCCQRAPPTPRKVGRRGKNSKEG
: : : :
NP_001 SWSCHLCLRHLKEKASAYITLT
320 330
410 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:20:36 2016 done: Sat Nov 5 10:20:37 2016
Total Scan time: 9.880 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]