Restriction map for
pFN21AB7969
(Circular) (Six-base) MAPSORT of: pFN21AB7969.seq Check: 6230 from: 1 to: 5560
pFN21AB7969 5560 bp
With 182 enzymes: SgfI *
April 15, 2010 09:29 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3370 278
Size: 53 83 186 936 1834 2468
Fragments arranged by size:
2468 1834 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2211 2903 1937
Size: 274 692 4594
Fragments arranged by size:
4594 692 274
Acc65I G'GTAC_C
Cuts at: 2881 2881
Size: 5560
AclI AA'CG_TT
Cuts at: 1563 3687 4060 1563
Size: 2124 373 3063
Fragments arranged by size:
3063 2124 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2550 3623 5007 5275 1632
Size: 918 1073 1384 268 1917
Fragments arranged by size:
1917 1384 1073 918 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5363
AflIII A'CryG_T
Cuts at: 1203 2322 4459 5436 1203
Size: 1119 2137 977 1327
Fragments arranged by size:
2137 1327 1119 977
AgeI A'CCGG_T
Cuts at: 4391 4391
Size: 5560
AhdI GACnn_n'nnGTC
Cuts at: 4289 4289
Size: 5560
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5560
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5560
AlwNI CAG_nnn'CTG
Cuts at: 2690 3303 4875 2690
Size: 613 1572 3375
Fragments arranged by size:
3375 1572 613
ApaLI G'TGCA_C
Cuts at: 3617 4773 3617
Size: 1156 4404
ApoI r'AATT_y
Cuts at: 1493 2037 2082 2162 2303 2869 3095 3247 5356
Size: 544 45 80 141 566 226 152 2109
Cuts at: 5356 1493
Size: 1697
Fragments arranged by size:
2109 1697 566 544 226 152 141 80
45
AseI AT'TA_AT
Cuts at: 160 1032 4114 160
Size: 872 3082 1606
Fragments arranged by size:
3082 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5560
AvaI C'yCGr_G
Cuts at: 1870 1943 2885 1870
Size: 73 942 4545
Fragments arranged by size:
4545 942 73
BamHI G'GATC_C
Cuts at: 2890 3257 2890
Size: 367 5193
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2881 4336 618
Size: 325 217 627 1094 1455 1842
Fragments arranged by size:
1842 1455 1094 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2879 1391
Size: 1488 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4589
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 1987 2021 3751 3785 1903
Size: 34 50 34 1730 34 3678
Fragments arranged by size:
3678 1730 50 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2375 3452 4662 2375
Size: 1077 1210 3273
Fragments arranged by size:
3273 1210 1077
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5560
BfrBI ATG'CAT
Cuts at: 2831 2831
Size: 5560
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4171 136
Size: 107 122 71 631 605 2499 1525
Fragments arranged by size:
2499 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5555 5555
Size: 5560
BlpI GC'TnA_GC
Cuts at: 2977 2977
Size: 5560
Bme1580I G_kGCm'C
Cuts at: 1790 3621 4777 1790
Size: 1831 1156 2573
Fragments arranged by size:
2573 1831 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5560
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2398 3291 4249
Size: 416 53 83 399 24 981 893 958
Cuts at: 4249 442
Size: 1753
Fragments arranged by size:
1753 981 958 893 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5560
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2459 2459
Size: 5560
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2256 2454 4220 1239
Size: 1017 198 1766 2579
Fragments arranged by size:
2579 1766 1017 198
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3685 4550 4848 3685
Size: 865 298 4397
Fragments arranged by size:
4397 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4223 882
Size: 617 2724 2219
Fragments arranged by size:
2724 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3351 493
Size: 711 2147 2702
Fragments arranged by size:
2702 2147 711
BsaBI GATnn'nnATC
Cuts at: 5554 5554
Size: 5560
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3367 3749 4384 275
Size: 53 83 186 936 1834 382 635 1451
Fragments arranged by size:
1834 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3993 4391 4665 4812 5223 3993
Size: 398 274 147 411 4330
Fragments arranged by size:
4330 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2309 2339 1178
Size: 30 165 30 906 30 4399
Fragments arranged by size:
4399 906 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2399 1186
Size: 1213 4347
BseYI C'CCAG_C
Cuts at: 4763 5259 4763
Size: 496 5064
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4987
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3010 3771 4799 1540
Size: 275 186 1009 761 1028 2301
Fragments arranged by size:
2301 1028 1009 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3621 3706 4777 3621
Size: 85 1071 4404
Fragments arranged by size:
4404 1071 85
BsmI GAATG_Cn'
Cuts at: 2833 3071 3164 2833
Size: 238 93 5229
Fragments arranged by size:
5229 238 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2879 3621 3706 4777 1391
Size: 399 1089 742 85 1071 2174
Fragments arranged by size:
2174 1089 1071 742 399 85
BspEI T'CCGG_A
Cuts at: 5223 5223
Size: 5560
BspHI T'CATG_A
Cuts at: 2598 3449 5179 2598
Size: 851 1730 2979
Fragments arranged by size:
2979 1730 851
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2915 844
Size: 2071 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3447 1394
Size: 429 1624 3507
Fragments arranged by size:
3507 1624 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2179 2696 4055 4229 65
Size: 1183 931 517 1359 174 1396
Fragments arranged by size:
1396 1359 1183 931 517 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4204 4391 1700
Size: 110 2394 187 2869
Fragments arranged by size:
2869 2394 187 110
BsrGI T'GTAC_A
Cuts at: 96 2809 96
Size: 2713 2847
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5560
BssSI C'ACGA_G
Cuts at: 3620 4632 3620
Size: 1012 4548
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5560
BstBI TT'CG_AA
Cuts at: 4364 4364
Size: 5560
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5560
BstYI r'GATC_y
Cuts at: 1972 2553 2687 2890 3257 3642 3659 5111 5197
Size: 581 134 203 367 385 17 1452 86
Cuts at: 5197 5209 5555 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 581 385 367 346 203 134
86 17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 5008
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4821
Fragments arranged by size:
4821 683 56
BtsI GCAGTG_nn'
Cuts at: 3076 3870 3890 3076
Size: 794 20 4746
Fragments arranged by size:
4746 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5560
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2752 2787 529
Size: 35 2188 35 3302
Fragments arranged by size:
3302 2188 35 35
DraI TTT'AAA
Cuts at: 2302 2374 2864 2302
Size: 72 490 4998
Fragments arranged by size:
4998 490 72
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4567 809
Size: 507 3251 1802
Fragments arranged by size:
3251 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 3007 3896 5525
Size: 54 1425 50 275 18 1177 889 1629
Cuts at: 5525 8
Size: 43
Fragments arranged by size:
1629 1425 1177 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 3007 1537
Size: 275 1195 4090
Fragments arranged by size:
4090 1195 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2064 2597 2832 3490 1353
Size: 711 533 235 658 3423
Fragments arranged by size:
3423 711 658 533 235
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4147 4521 4667 387
Size: 1064 138 2558 374 146 1280
Fragments arranged by size:
2558 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2256 2454 2550 3623 4220 5007 5275
Size: 393 624 198 96 1073 597 787 268
Cuts at: 5275 1239
Size: 1524
Fragments arranged by size:
1524 1073 787 624 597 393 268 198
96
EcoRI G'AATT_C
Cuts at: 2162 2869 3247 2162
Size: 707 378 4475
Fragments arranged by size:
4475 707 378
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2555 2555
Size: 5560
FspI TGC'GCA
Cuts at: 4066 4066
Size: 5560
HaeII r_GCGC'y
Cuts at: 1678 4707 1678
Size: 3029 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4201 4233 4275 4307 1373
Size: 32 135 32 2629 32 42 32 2626
Fragments arranged by size:
2629 2626 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2904 3150 669
Size: 988 281 966 246 3079
Fragments arranged by size:
3079 988 966 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5560
HpaI GTT'AAC
Cuts at: 3150 3150
Size: 5560
KpnI G_GTAC'C
Cuts at: 2885 2885
Size: 5560
MfeI C'AATT_G
Cuts at: 3159 3159
Size: 5560
MluI A'CGCG_T
Cuts at: 5436 5436
Size: 5560
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4674 4858 1305
Size: 3369 184 2007
Fragments arranged by size:
3369 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3738
Fragments arranged by size:
3738 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2708 2754 2781 3518 3877 4036 518
Size: 648 1542 46 27 737 359 159 2042
Fragments arranged by size:
2042 1542 737 648 359 159 46 27
MspA1I CmG'CkG
Cuts at: 1606 2012 2976 3653 4801 5046 1606
Size: 406 964 677 1148 245 2120
Fragments arranged by size:
2120 1148 964 677 406 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 5008
NdeI CA'TA_TG
Cuts at: 387 2833 387
Size: 2446 3114
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5560
NotI GC'GGCC_GC
Cuts at: 3007 3007
Size: 5560
NsiI A_TGCA'T
Cuts at: 2833 2833
Size: 5560
NspI r_CATG'y
Cuts at: 1132 1229 2326 2918 4463 1132
Size: 97 1097 592 1545 2229
Fragments arranged by size:
2229 1545 1097 592 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5560
PciI A'CATG_T
Cuts at: 2322 4459 2322
Size: 2137 3423
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5560
PfoI T'CCnGG_A
Cuts at: 2272 2272
Size: 5560
PmeI GTTT'AAAC
Cuts at: 2864 2864
Size: 5560
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3629 3661 5142 5174 3629
Size: 32 1481 32 4015
Fragments arranged by size:
4015 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5560
PsiI TTA'TAA
Cuts at: 3130 3130
Size: 5560
PstI C_TGCA'G
Cuts at: 830 2912 830
Size: 2082 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5560
SalI G'TCGA_C
Cuts at: 1936 2902 1936
Size: 966 4594
SapI GCTCTTCn'nnn_
Cuts at: 2597 2597
Size: 5560
SbfI CC_TGCA'GG
Cuts at: 2912 2912
Size: 5560
ScaI AGT'ACT
Cuts at: 2408 3808 5520 2408
Size: 1400 1712 2448
Fragments arranged by size:
2448 1712 1400
SfcI C'TryA_G
Cuts at: 826 1045 2019 2340 2908 4043 4724 4915 826
Size: 219 974 321 568 1135 681 191 1471
Fragments arranged by size:
1471 1135 974 681 568 321 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5560
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5560
SmaI CCC'GGG
Cuts at: 1872 2887 1872
Size: 1015 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3664 4565 4827 820
Size: 197 926 1721 901 262 1553
Fragments arranged by size:
1721 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3351 493
Size: 2858 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5560
SphI G_CATG'C
Cuts at: 1132 2918 1132
Size: 1786 3774
SspI AAT'ATT
Cuts at: 5 52 2768 3484 5
Size: 47 2716 716 2081
Fragments arranged by size:
2716 2081 716 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5560
StyI C'CwwG_G
Cuts at: 513 1065 2788 2999 513
Size: 552 1723 211 3074
Fragments arranged by size:
3074 1723 552 211
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3587 3604 3757 3942 4387 325
Size: 1255 2007 17 153 185 445 1498
Fragments arranged by size:
2007 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2406 2809 3806
Size: 274 80 33 51 1443 429 403 997
Cuts at: 3806 5518 96
Size: 1712 138
Fragments arranged by size:
1712 1443 997 429 403 274 138 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2116 2148 5520 5552 2116
Size: 32 3372 32 2124
Fragments arranged by size:
3372 2124 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5560
XbaI T'CTAG_A
Cuts at: 2896 2896
Size: 5560
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5560
XmaI C'CCGG_G
Cuts at: 1870 2885 1870
Size: 1015 4545
XmnI GAAnn'nnTTC
Cuts at: 3689 3689
Size: 5560
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3368 276
Size: 53 83 186 936 1834 2468
Fragments arranged by size:
2468 1834 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NsiI NspI PasI PciI
PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI
SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI
NarI NgoMIV NruI PacI PmlI PpuMI PspOMI PspXI
PsrI PvuII RsrII SacI SacII SanDI SexAI SfiI
SfoI SrfI SwaI XcmI