Result of FASTA (omim) for
pFN21AB9826
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9826, 321 aa
1>>>pF1KB9826 321 - 321 aa - 321 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0260+/-0.000388; mu= -8.9131+/- 0.024
mean_var=309.4862+/-62.015, 0's: 0 Z-trim(123.2): 127 B-trim: 28 in 1/57
Lambda= 0.072904
statistics sampled from 42520 (42647) to 42520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.5), width: 16
Scan time: 9.300
The best scores are: opt bits E(85289)
NP_002478 (OMIM: 176270,602117) necdin [Homo sapie ( 321) 2164 240.3 3.9e-63
NP_803182 (OMIM: 300470,300971) melanoma-associate ( 606) 650 81.3 5.7e-15
NP_957516 (OMIM: 300470,300971) melanoma-associate ( 606) 650 81.3 5.7e-15
NP_055414 (OMIM: 300470,300971) melanoma-associate ( 606) 650 81.3 5.7e-15
NP_619649 (OMIM: 608243) non-structural maintenanc ( 304) 631 79.1 1.3e-14
NP_071432 (OMIM: 609267) melanoma-associated antig ( 307) 615 77.4 4.2e-14
NP_808225 (OMIM: 300132) trophinin isoform 4 [Homo ( 309) 615 77.4 4.2e-14
XP_016885262 (OMIM: 300132) PREDICTED: trophinin i ( 662) 615 77.6 7.8e-14
XP_016885261 (OMIM: 300132) PREDICTED: trophinin i ( 662) 615 77.6 7.8e-14
XP_016885260 (OMIM: 300132) PREDICTED: trophinin i ( 706) 615 77.6 8.2e-14
NP_057241 (OMIM: 300132) trophinin isoform 2 [Homo ( 706) 615 77.6 8.2e-14
NP_808224 (OMIM: 300132) trophinin isoform 2 [Homo ( 706) 615 77.6 8.2e-14
XP_016885259 (OMIM: 300132) PREDICTED: trophinin i ( 706) 615 77.6 8.2e-14
XP_016885258 (OMIM: 300132) PREDICTED: trophinin i ( 706) 615 77.6 8.2e-14
NP_001258113 (OMIM: 300132) trophinin isoform 7 [H (1034) 615 77.7 1.1e-13
XP_016885257 (OMIM: 300132) PREDICTED: trophinin i (1387) 615 77.8 1.4e-13
XP_011529116 (OMIM: 300132) PREDICTED: trophinin i (1387) 615 77.8 1.4e-13
XP_011529115 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
XP_016885256 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
NP_001034794 (OMIM: 300132) trophinin isoform 5 [H (1431) 615 77.8 1.5e-13
XP_011529113 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
XP_011529110 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
XP_011529114 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
XP_006724663 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
XP_011529111 (OMIM: 300132) PREDICTED: trophinin i (1431) 615 77.8 1.5e-13
XP_011529137 (OMIM: 300224) PREDICTED: melanoma-as ( 778) 602 76.3 2.3e-13
XP_016885468 (OMIM: 300224) PREDICTED: melanoma-as ( 778) 602 76.3 2.3e-13
XP_016885469 (OMIM: 300224) PREDICTED: melanoma-as ( 778) 602 76.3 2.3e-13
NP_001005332 (OMIM: 300224) melanoma-associated an ( 778) 602 76.3 2.3e-13
XP_016885467 (OMIM: 300224) PREDICTED: melanoma-as ( 778) 602 76.3 2.3e-13
NP_008917 (OMIM: 300224) melanoma-associated antig ( 778) 602 76.3 2.3e-13
NP_001005333 (OMIM: 300224) melanoma-associated an ( 834) 602 76.3 2.4e-13
XP_016885365 (OMIM: 300765) PREDICTED: melanoma-as ( 739) 541 69.9 1.9e-11
NP_803881 (OMIM: 300765) melanoma-associated antig ( 739) 541 69.9 1.9e-11
NP_001092270 (OMIM: 300702) melanoma-associated an ( 739) 541 69.9 1.9e-11
XP_011529124 (OMIM: 300765) PREDICTED: melanoma-as ( 739) 541 69.9 1.9e-11
XP_006724671 (OMIM: 300765) PREDICTED: melanoma-as ( 741) 541 69.9 1.9e-11
NP_803879 (OMIM: 300765) melanoma-associated antig ( 741) 541 69.9 1.9e-11
NP_001258992 (OMIM: 300702) melanoma-associated an ( 741) 541 69.9 1.9e-11
XP_006724670 (OMIM: 300765) PREDICTED: melanoma-as ( 741) 541 69.9 1.9e-11
NP_110428 (OMIM: 300765) melanoma-associated antig ( 741) 541 69.9 1.9e-11
NP_001258991 (OMIM: 300702) melanoma-associated an ( 741) 541 69.9 1.9e-11
NP_002358 (OMIM: 300153) melanoma-associated antig ( 346) 532 68.7 2e-11
NP_061939 (OMIM: 176270,605283,615547) MAGE-like p (1249) 546 70.5 2e-11
NP_001258112 (OMIM: 300132) trophinin isoform 6 [H ( 962) 523 68.0 8.6e-11
NP_065983 (OMIM: 300759) melanoma-associated antig ( 957) 518 67.5 1.2e-10
NP_803134 (OMIM: 300097) melanoma-associated antig ( 347) 505 65.9 1.4e-10
NP_002354 (OMIM: 300097) melanoma-associated antig ( 347) 505 65.9 1.4e-10
NP_796379 (OMIM: 300097) melanoma-associated antig ( 347) 505 65.9 1.4e-10
XP_011543814 (OMIM: 300098) PREDICTED: melanoma-as ( 319) 491 64.4 3.7e-10
>>NP_002478 (OMIM: 176270,602117) necdin [Homo sapiens] (321 aa)
initn: 2164 init1: 2164 opt: 2164 Z-score: 1254.4 bits: 240.3 E(85289): 3.9e-63
Smith-Waterman score: 2164; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB9 MSEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMIIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMIIW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDRVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREALEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREALEE
250 260 270 280 290 300
310 320
pF1KB9 ARALREANPTAHYPRSSVSED
:::::::::::::::::::::
NP_002 ARALREANPTAHYPRSSVSED
310 320
>>NP_803182 (OMIM: 300470,300971) melanoma-associated an (606 aa)
initn: 722 init1: 630 opt: 650 Z-score: 389.8 bits: 81.3 E(85289): 5.7e-15
Smith-Waterman score: 650; 42.1% identity (69.6% similar) in 247 aa overlap (67-311:248-493)
40 50 60 70 80 90
pF1KB9 TLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPA
::: . :.. :: . :. .: :: .
NP_803 SRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR-RAAKLQSSQEPEAPPPRDV
220 230 240 250 260 270
100 110 120 130 140 150
pF1KB9 QLVQ-KAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHL
:.: .:..:. :.:.::: :. : ::.::.: : :..:.. : .:::..:
NP_803 ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGIQL
280 290 300 310 320 330
160 170 180 190 200 210
pF1KB9 RLTSLHTMEFALVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLR
. . . . :...::: . .. .. : :::...::.:...: . :...:.:::
NP_803 KEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIWEVLR
340 350 360 370 380 390
220 230 240 250 260 270
pF1KB9 ILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQI
::::: .:: ::::.::::.:::...:: : ::: .::::::::: :. : .::..
NP_803 KLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYETSKMKV
400 410 420 430 440 450
280 290 300 310 320
pF1KB9 MEFLARVFKKDPQAWPSRYREALE-EARALREANPTAHYPRSSVSED
..: .: ::::. : ..::::.: . .: :: :
NP_803 LKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPC
460 470 480 490 500 510
NP_803 NWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTSGGFSAGASLT
520 530 540 550 560 570
>>NP_957516 (OMIM: 300470,300971) melanoma-associated an (606 aa)
initn: 722 init1: 630 opt: 650 Z-score: 389.8 bits: 81.3 E(85289): 5.7e-15
Smith-Waterman score: 650; 42.1% identity (69.6% similar) in 247 aa overlap (67-311:248-493)
40 50 60 70 80 90
pF1KB9 TLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPA
::: . :.. :: . :. .: :: .
NP_957 SRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR-RAAKLQSSQEPEAPPPRDV
220 230 240 250 260 270
100 110 120 130 140 150
pF1KB9 QLVQ-KAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHL
:.: .:..:. :.:.::: :. : ::.::.: : :..:.. : .:::..:
NP_957 ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGIQL
280 290 300 310 320 330
160 170 180 190 200 210
pF1KB9 RLTSLHTMEFALVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLR
. . . . :...::: . .. .. : :::...::.:...: . :...:.:::
NP_957 KEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIWEVLR
340 350 360 370 380 390
220 230 240 250 260 270
pF1KB9 ILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQI
::::: .:: ::::.::::.:::...:: : ::: .::::::::: :. : .::..
NP_957 KLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYETSKMKV
400 410 420 430 440 450
280 290 300 310 320
pF1KB9 MEFLARVFKKDPQAWPSRYREALE-EARALREANPTAHYPRSSVSED
..: .: ::::. : ..::::.: . .: :: :
NP_957 LKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPC
460 470 480 490 500 510
NP_957 NWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTSGGFSAGASLT
520 530 540 550 560 570
>>NP_055414 (OMIM: 300470,300971) melanoma-associated an (606 aa)
initn: 722 init1: 630 opt: 650 Z-score: 389.8 bits: 81.3 E(85289): 5.7e-15
Smith-Waterman score: 650; 42.1% identity (69.6% similar) in 247 aa overlap (67-311:248-493)
40 50 60 70 80 90
pF1KB9 TLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPA
::: . :.. :: . :. .: :: .
NP_055 SRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR-RAAKLQSSQEPEAPPPRDV
220 230 240 250 260 270
100 110 120 130 140 150
pF1KB9 QLVQ-KAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHL
:.: .:..:. :.:.::: :. : ::.::.: : :..:.. : .:::..:
NP_055 ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGIQL
280 290 300 310 320 330
160 170 180 190 200 210
pF1KB9 RLTSLHTMEFALVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLR
. . . . :...::: . .. .. : :::...::.:...: . :...:.:::
NP_055 KEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIWEVLR
340 350 360 370 380 390
220 230 240 250 260 270
pF1KB9 ILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQI
::::: .:: ::::.::::.:::...:: : ::: .::::::::: :. : .::..
NP_055 KLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYETSKMKV
400 410 420 430 440 450
280 290 300 310 320
pF1KB9 MEFLARVFKKDPQAWPSRYREALE-EARALREANPTAHYPRSSVSED
..: .: ::::. : ..::::.: . .: :: :
NP_055 LKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPC
460 470 480 490 500 510
NP_055 NWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTSGGFSAGASLT
520 530 540 550 560 570
>>NP_619649 (OMIM: 608243) non-structural maintenance of (304 aa)
initn: 633 init1: 430 opt: 631 Z-score: 383.3 bits: 79.1 E(85289): 1.3e-14
Smith-Waterman score: 631; 39.9% identity (68.1% similar) in 263 aa overlap (59-316:46-304)
30 40 50 60 70 80
pF1KB9 SEGVPPSATLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQP
.::. : . : . .: . :. ::
NP_619 ERDRDWSHSGNPGASRAGEDARVLRDGFAEEAPSTSRGPGGSQ--GSQGPSPQGARRAQA
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB9 GPA--PPAPAQLVQKAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLI
.:: : . :: :. ::. ..:.:::::. : :..: :::.:: ....:..
NP_619 APAVGPRSQKQLELKVSELVQFLLIKDQKKIPIKRADILKHVIGDYKDIFPDLFKRAAER
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB9 LARVFGLHLRLTSLHTMEFALVKALEPEELDRVALSNR-MPMTGLLLMILSLIYVKGRGA
: ::: .: .. . :...::: : : ... : ::::...:.::..::
NP_619 LQYVFGYKLVELEPKSNTYILINTLEPVEEDAEMRGDQGTPTTGLLMIVLGLIFMKGNTI
140 150 160 170 180 190
210 220 230 240 250 260
pF1KB9 RESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSR
.:. .:. :: ::. : ::: ::: .:::::.::.. ::.:.:.:...: .::: :: :
NP_619 KETEAWDFLRRLGVYPTKKHLIFGDPKKLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPR
200 210 220 230 240 250
270 280 290 300 310 320
pF1KB9 ASREITKMQIMEFLARVFKKDPQAWPSRYREAL--EEARALREANPTAHYPRSSVSED
.. : .::....:.:.: ..::. ::..: ::: :: :: . .:.. : :
NP_619 TNLETSKMKVLKFVAKVHNQDPKDWPAQYCEALADEENRA--RPQPSGPAPSS
260 270 280 290 300
>>NP_071432 (OMIM: 609267) melanoma-associated antigen F (307 aa)
initn: 584 init1: 463 opt: 615 Z-score: 374.2 bits: 77.4 E(85289): 4.2e-14
Smith-Waterman score: 615; 40.3% identity (66.3% similar) in 288 aa overlap (29-311:7-292)
10 20 30 40 50 60
pF1KB9 MSEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQA
:.:.: . .: .. : : :: :. .
NP_071 MLQTPESRGLPVPQAEGEKDGGHDGETRAPTASQ--ER
10 20 30
70 80 90 100 110
pF1KB9 PNDEGDPKALQQAAEEGRAHQAPSA--AQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMI
:..: . ::: . .... : :. : .: . . ::. ..::::.::
NP_071 PKEELGAGREEGAAEPALTRKGARALAAKALARRRAYRRLNRTVAELVQFLLVKDKKKSP
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEP-EELD
: .::: :::. : .:. :.. : :::..:. . . . :.. :.: :: .
NP_071 ITRSEMVKYVIGDLKILFPDIIARAAEHLRYVFGFELKQFDRKHHTYILINKLKPLEEEE
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB9 RVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITE
. :.. : :::.:::.:::..: .:::. ::..:: ::..: : : :: ..:: :
NP_071 EEDLGGDGPRLGLLMMILGLIYMRGNSAREAQVWEMLRRLGVQPSKYHFLFGYPKRLIME
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB9 EFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREA
.:::. ::.:.:::...:::::: :: :.. ::.::... :.:.. ::.:: :: .::::
NP_071 DFVQQRYLSYRRVPHTNPPEYEFSWGPRSNLEISKMEVLGFVAKLHKKEPQHWPVQYREA
220 230 240 250 260 270
300 310 320
pF1KB9 L-EEA-RALREANPTAHYPRSSVSED
: .:: :: .: :
NP_071 LADEADRARAKARAEASMRARASARAGIHLW
280 290 300
>>NP_808225 (OMIM: 300132) trophinin isoform 4 [Homo sap (309 aa)
initn: 570 init1: 460 opt: 615 Z-score: 374.1 bits: 77.4 E(85289): 4.2e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:38-247)
60 70 80 90 100 110
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
:::: . ..: .:..:. :.::::: :.
NP_808 GYRVPLFQSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
: ::..::: : .. :..:.: : ..: ..:. . .. . :... :
NP_808 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
.. .. : :::..:::.:...: : :...:.::: ::::: .:: ::.::::::.:
NP_808 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
130 140 150 160 170 180
240 250 260 270 280 290
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
::...::.:.::: .::::::::: :. .: .::....: :: ::::. : .::::.
NP_808 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
190 200 210 220 230 240
300 310 320
pF1KB9 EEARALREANPTAHYPRSSVSED
:
NP_808 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
250 260 270 280 290 300
>>XP_016885262 (OMIM: 300132) PREDICTED: trophinin isofo (662 aa)
initn: 577 init1: 460 opt: 615 Z-score: 369.3 bits: 77.6 E(85289): 7.8e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:391-600)
60 70 80 90 100 110
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
:::: . ..: .:..:. :.::::: :.
XP_016 TRGKRNRKSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
370 380 390 400 410 420
120 130 140 150 160 170
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
: ::..::: : .. :..:.: : ..: ..:. . .. . :... :
XP_016 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
430 440 450 460 470
180 190 200 210 220 230
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
.. .. : :::..:::.:...: : :...:.::: ::::: .:: ::.::::::.:
XP_016 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
480 490 500 510 520 530
240 250 260 270 280 290
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
::...::.:.::: .::::::::: :. .: .::....: :: ::::. : .::::.
XP_016 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
540 550 560 570 580 590
300 310 320
pF1KB9 EEARALREANPTAHYPRSSVSED
:
XP_016 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
600 610 620 630 640 650
>>XP_016885261 (OMIM: 300132) PREDICTED: trophinin isofo (662 aa)
initn: 577 init1: 460 opt: 615 Z-score: 369.3 bits: 77.6 E(85289): 7.8e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:391-600)
60 70 80 90 100 110
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
:::: . ..: .:..:. :.::::: :.
XP_016 TRGKRNRKSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
370 380 390 400 410 420
120 130 140 150 160 170
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
: ::..::: : .. :..:.: : ..: ..:. . .. . :... :
XP_016 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
430 440 450 460 470
180 190 200 210 220 230
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
.. .. : :::..:::.:...: : :...:.::: ::::: .:: ::.::::::.:
XP_016 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
480 490 500 510 520 530
240 250 260 270 280 290
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
::...::.:.::: .::::::::: :. .: .::....: :: ::::. : .::::.
XP_016 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
540 550 560 570 580 590
300 310 320
pF1KB9 EEARALREANPTAHYPRSSVSED
:
XP_016 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
600 610 620 630 640 650
>>XP_016885260 (OMIM: 300132) PREDICTED: trophinin isofo (706 aa)
initn: 577 init1: 460 opt: 615 Z-score: 368.9 bits: 77.6 E(85289): 8.2e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:435-644)
60 70 80 90 100 110
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
:::: . ..: .:..:. :.::::: :.
XP_016 TRGKRNRKSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
410 420 430 440 450 460
120 130 140 150 160 170
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
: ::..::: : .. :..:.: : ..: ..:. . .. . :... :
XP_016 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
470 480 490 500 510 520
180 190 200 210 220 230
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
.. .. : :::..:::.:...: : :...:.::: ::::: .:: ::.::::::.:
XP_016 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
530 540 550 560 570 580
240 250 260 270 280 290
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
::...::.:.::: .::::::::: :. .: .::....: :: ::::. : .::::.
XP_016 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
590 600 610 620 630 640
300 310 320
pF1KB9 EEARALREANPTAHYPRSSVSED
:
XP_016 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
650 660 670 680 690 700
321 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:30:27 2016 done: Fri Nov 4 19:30:28 2016
Total Scan time: 9.300 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]