FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9822, 312 aa
  1>>>pF1KB9822 312 - 312 aa - 312 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3128+/-0.000308; mu= 12.7880+/- 0.019
 mean_var=122.6431+/-24.512, 0's: 0 Z-trim(120.1): 7  B-trim: 0 in 0/56
 Lambda= 0.115812
 statistics sampled from 34893 (34900) to 34893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.409), width:  16
 Scan time:  6.260

The best scores are:                                      opt bits E(85289)
NP_150093 (OMIM: 608887) transcriptional activator ( 312) 2117 364.2 1.9e-100
NP_005850 (OMIM: 600473,616158) transcriptional ac ( 322)  753 136.3 7.9e-32


>>NP_150093 (OMIM: 608887) transcriptional activator pro  (312 aa)
 initn: 2117 init1: 2117 opt: 2117  Z-score: 1924.3  bits: 364.2 E(85289): 1.9e-100
Smith-Waterman score: 2117; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KB9 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
              250       260       270       280       290       300

              310  
pF1KB9 GEESEGEEVDED
       ::::::::::::
NP_150 GEESEGEEVDED
              310  

>>NP_005850 (OMIM: 600473,616158) transcriptional activa  (322 aa)
 initn: 1048 init1: 498 opt: 753  Z-score: 692.4  bits: 136.3 E(85289): 7.9e-32
Smith-Waterman score: 1270; 71.7% identity (83.6% similar) in 286 aa overlap (4-289:31-288)

                                          10        20        30   
pF1KB9                            MADGDSGSERGGGGGPCGFQPASRGGGEQETQE
                                     : .:.  :::::  :   .. :: ..::::
NP_005 MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQE
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB9 LASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEH
       :::::.:::::::::::::::::::::::::::::.::::::::.::.:::: :::::::
NP_005 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB9 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG
       :::::::.: .:: . .:   ::::::::::::::::::.::::::::::::::::::::
NP_005 YAQLGPSQPPDLAQAQDE---PRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRG
              130          140       150       160       170       

           160       170       180       190       200       210   
pF1KB9 GGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGG
              :: :. : :::::::::::::::::::::::::: :..     :.        
NP_005 -------PGLGSTQ-GQTIALPAQGLIEFRDALAKLIDDYGVEEE-----PA--------
              180        190       200       210                   

           220       230       240       250       260       270   
pF1KB9 GLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFC
           :::::::.:::.:::::::: ::::::.:::::::.:::.::::.:.:.::: .::
NP_005 ----ELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFC
            220       230       240       250       260       270  

           280       290       300       310             
pF1KB9 RYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED           
       .:..:::.:::.::.:                                  
NP_005 KYSEEMKKIQEKQREKRAACEQLHQQQQQQQEETAAATLLLQGEEEGEED
            280       290       300       310       320  




312 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:28:04 2016 done: Fri Nov  4 19:28:05 2016
 Total Scan time:  6.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]