Result of FASTA (ccds) for
pFN21AB9786
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9786, 191 aa
1>>>pF1KB9786 191 - 191 aa - 191 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2839+/-0.000825; mu= 14.2464+/- 0.050
mean_var=84.3994+/-17.072, 0's: 0 Z-trim(109.8): 174 B-trim: 321 in 1/52
Lambda= 0.139606
statistics sampled from 10967 (11158) to 10967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.343), width: 16
Scan time: 1.970
The best scores are: opt bits E(32554)
CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 1305 271.9 1.7e-73
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 936 197.6 3.9e-51
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 922 194.8 2.8e-50
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 913 193.0 9.8e-50
CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 837 177.7 3.9e-45
CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 814 173.0 9.8e-44
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 724 154.9 2.8e-38
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 724 154.9 2.9e-38
CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 713 152.7 1.3e-37
CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 674 144.8 3.1e-35
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 669 143.9 6.6e-35
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 635 137.1 8.7e-33
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 627 135.4 2.5e-32
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 614 132.8 1.4e-31
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 595 128.9 2e-30
CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 569 123.7 6.9e-29
CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 565 123.0 1.5e-28
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 532 116.3 1.4e-26
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 512 112.2 2.2e-25
CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 479 105.5 2e-23
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 467 103.2 1.2e-22
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 341 78.3 1.2e-14
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 341 78.3 1.3e-14
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 341 78.3 1.3e-14
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 338 77.6 1.8e-14
CCDS7698.1 HRAS gene_id:3265|Hs108|chr11 ( 189) 294 68.3 3.3e-12
CCDS7699.1 HRAS gene_id:3265|Hs108|chr11 ( 170) 285 66.4 1.1e-11
CCDS8703.1 KRAS gene_id:3845|Hs108|chr12 ( 189) 284 66.3 1.3e-11
CCDS8702.1 KRAS gene_id:3845|Hs108|chr12 ( 188) 279 65.3 2.6e-11
>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1433.1 bits: 271.9 E(32554): 1.7e-73
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:::::::::::
CCDS77 PIKRGRSCILL
190
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 918 init1: 918 opt: 936 Z-score: 1031.4 bits: 197.6 E(32554): 3.9e-51
Smith-Waterman score: 936; 71.9% identity (86.5% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: ::::..::.::::: :::
CCDS53 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::...:::. .::: :: :.::.: ::.::::::: : :.: :: ::.:::: :
CCDS53 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB9 PIK-RGRSCILL
:.: : :.:.::
CCDS53 PVKKRKRKCLLL
190
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 947 init1: 909 opt: 922 Z-score: 1016.2 bits: 194.8 E(32554): 2.8e-50
Smith-Waterman score: 922; 69.8% identity (85.9% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: :::: .:::::::: :::
CCDS11 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::..::... :::: :: :.:..: .:.::::::: : :.: :: ::.:::: :
CCDS11 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB9 PIKR-GRSCILL
:.:. :..: ..
CCDS11 PVKKPGKKCTVF
190
>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa)
initn: 941 init1: 900 opt: 913 Z-score: 1006.4 bits: 193.0 E(32554): 9.8e-50
Smith-Waterman score: 913; 71.4% identity (84.9% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. ::.. :::.::::::
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :::::: :: ::: ::::..::.::::: :::
CCDS13 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::...:::. :::: :: ::::.: .:.::::::: : :.: :: ::.:::: :
CCDS13 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
130 140 150 160 170 180
190
pF1KB9 PIKRG-RSCILL
: .. :.: ::
CCDS13 PTRQQKRACSLL
190
>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 837 init1: 837 opt: 837 Z-score: 923.7 bits: 177.7 E(32554): 3.9e-45
Smith-Waterman score: 837; 60.7% identity (85.3% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: :::: ::.::.:::::::.. . :. .:.:.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
.:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.:
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:..: :.::
CCDS22 EPKKSRRCVLL
190
>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 814 init1: 799 opt: 814 Z-score: 898.7 bits: 173.0 E(32554): 9.8e-44
Smith-Waterman score: 814; 59.2% identity (84.3% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: :::: ::.::.:::::::.. . :. .:.:.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
.:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.:
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
. :.: ..
CCDS22 ETQPKRKCCIF
190
>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa)
initn: 727 init1: 693 opt: 724 Z-score: 800.6 bits: 154.9 E(32554): 2.8e-38
Smith-Waterman score: 724; 55.6% identity (78.1% similar) in 187 aa overlap (5-191:7-193)
10 20 30 40 50
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
: :.::::: ::::::: .. . ::. :.::::.:: :. :::. :.: ::::
CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
::::.::::: ::::.:.:...:::: :: : ::. .:: ::: : ::.:::.:::.:::
CCDS27 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
:: . : :.: .. : :. :..:. .:..: : :.:::: .:::.::: :.::.:.
CCDS27 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ
130 140 150 160 170 180
180 190
pF1KB9 PTPIKRGRSCILL
:. .:..:
CCDS27 ARRGKKKSGCLVL
190
>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 (205 aa)
initn: 748 init1: 714 opt: 724 Z-score: 800.3 bits: 154.9 E(32554): 2.9e-38
Smith-Waterman score: 724; 56.8% identity (81.1% similar) in 190 aa overlap (4-189:10-199)
10 20 30 40 50
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLN
.::::::::::::::::. :...:::.::.:::::.:... .: :. :.
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVG
:.::::::.::::: ::::.:.::.::::...: :..::...: ::. .. :.::.::.:
CCDS33 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 TKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVR
:. ::: .: :: ::... . :: .::: :::.: : :.::::: : :.: :: ::.
CCDS33 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII
130 140 150 160 170 180
180 190
pF1KB9 AVLNP---TPIKR-GRSCILL
:.:.: : :: : ::
CCDS33 AILTPKKHTVKKRIGSRCINCCLIT
190 200
>>CCDS854.1 RHOC gene_id:389|Hs108|chr1 (193 aa)
initn: 719 init1: 700 opt: 713 Z-score: 788.7 bits: 152.7 E(32554): 1.3e-37
Smith-Waterman score: 713; 56.1% identity (77.0% similar) in 187 aa overlap (5-191:7-193)
10 20 30 40 50
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
: :.::::: ::::::: .. . ::. :.::::.:: :. :::. :.: ::::
CCDS85 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
::::.::::: ::::.:.:...:::: :: : ::. .:: ::: : ::.:::.:::.:::
CCDS85 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
:: . : :.: .. : :. ..:. .:..: : :::::: ..::.::: :.:: :.
CCDS85 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
130 140 150 160 170 180
180 190
pF1KB9 PTPIKRGRSCILL
:: :.: .:
CCDS85 VRKNKRRRGCPIL
190
>>CCDS1699.1 RHOB gene_id:388|Hs108|chr2 (196 aa)
initn: 689 init1: 670 opt: 674 Z-score: 746.1 bits: 144.8 E(32554): 3.1e-35
Smith-Waterman score: 674; 56.6% identity (79.8% similar) in 173 aa overlap (5-177:7-179)
10 20 30 40 50
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
: ::::::: ::::::: .. . ::. :.::::.:: :. :::. :.: ::::
CCDS16 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
::::.::::: ::::.:.:...:::. :: : ::. .:: ::: : ::.:::.::..:::
CCDS16 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
::.. . .: .. : :. ..:.:.: .:.: :::::: ..::.::: :.::.:
CCDS16 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
130 140 150 160 170 180
180 190
pF1KB9 PTPIKRGRSCILL
CCDS16 KRYGSQNGCINCCKVL
190
191 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:55:52 2016 done: Fri Nov 4 18:55:52 2016
Total Scan time: 1.970 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]