(Circular) (Six-base) MAPSORT of: pFN21AB9781.seq Check: 6972 from: 1 to: 5065 pFN21AB9781 5065 bp With 182 enzymes: SgfI * January 16, 2009 15:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2875 278 Size: 53 83 186 936 1339 2468 Fragments arranged by size: 2468 1339 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2408 1937 Size: 471 4594 Acc65I G'GTAC_C Cuts at: 2386 2386 Size: 5065 AclI AA'CG_TT Cuts at: 1563 3192 3565 1563 Size: 1629 373 3063 Fragments arranged by size: 3063 1629 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3128 4512 4780 1632 Size: 1496 1384 268 1917 Fragments arranged by size: 1917 1496 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4868 AflIII A'CryG_T Cuts at: 1203 3964 4941 1203 Size: 2761 977 1327 Fragments arranged by size: 2761 1327 977 AgeI A'CCGG_T Cuts at: 3896 3896 Size: 5065 AhdI GACnn_n'nnGTC Cuts at: 3794 3794 Size: 5065 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5065 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2137 1184 Size: 953 4112 AlwNI CAG_nnn'CTG Cuts at: 2808 4380 2808 Size: 1572 3493 ApaLI G'TGCA_C Cuts at: 3122 4278 3122 Size: 1156 3909 ApoI r'AATT_y Cuts at: 1493 2374 2600 2752 4861 1493 Size: 881 226 152 2109 1697 Fragments arranged by size: 2109 1697 881 226 152 AseI AT'TA_AT Cuts at: 160 1032 3619 160 Size: 872 2587 1606 Fragments arranged by size: 2587 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5065 AvaI C'yCGr_G Cuts at: 1870 1943 2390 1870 Size: 73 447 4545 Fragments arranged by size: 4545 447 73 BamHI G'GATC_C Cuts at: 2395 2762 2395 Size: 367 4698 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2386 3841 618 Size: 325 217 627 599 1455 1842 Fragments arranged by size: 1842 1455 627 599 325 217 BanII G_rGCy'C Cuts at: 1391 2131 2384 1391 Size: 740 253 4072 Fragments arranged by size: 4072 740 253 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2345 928 Size: 971 446 3648 Fragments arranged by size: 3648 971 446 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3256 3290 1903 Size: 34 1319 34 3678 Fragments arranged by size: 3678 1319 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2179 2957 4167 2179 Size: 778 1210 3077 Fragments arranged by size: 3077 1210 778 BclI T'GATC_A Cuts at: 1548 1548 Size: 5065 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3676 136 Size: 107 122 71 631 605 2004 1525 Fragments arranged by size: 2004 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5060 5060 Size: 5065 BlpI GC'TnA_GC Cuts at: 2482 2482 Size: 5065 Bme1580I G_kGCm'C Cuts at: 1790 2197 3126 4282 1790 Size: 407 929 1156 2573 Fragments arranged by size: 2573 1156 929 407 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5065 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2796 3754 442 Size: 416 53 83 399 24 1379 958 1753 Fragments arranged by size: 1753 1379 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5065 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2304 3725 1239 Size: 1065 1421 2579 Fragments arranged by size: 2579 1421 1065 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2114 2299 3190 4055 4353 2114 Size: 185 891 865 298 2826 Fragments arranged by size: 2826 891 865 298 185 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3728 882 Size: 617 2229 2219 Fragments arranged by size: 2229 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2856 493 Size: 711 1652 2702 Fragments arranged by size: 2702 1652 711 BsaBI GATnn'nnATC Cuts at: 5059 5059 Size: 5065 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2872 3254 3889 275 Size: 53 83 186 936 1339 382 635 1451 Fragments arranged by size: 1451 1339 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3498 3896 4170 4317 4728 3498 Size: 398 274 147 411 3835 Fragments arranged by size: 3835 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2019 2049 1178 Size: 30 165 30 616 30 4194 Fragments arranged by size: 4194 616 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2113 1186 Size: 927 4138 BseYI C'CCAG_C Cuts at: 2333 4268 4764 2333 Size: 1935 496 2634 Fragments arranged by size: 2634 1935 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4492 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2515 3276 4304 1540 Size: 275 186 514 761 1028 2301 Fragments arranged by size: 2301 1028 761 514 275 186 BsiHKAI G_wGCw'C Cuts at: 3126 3211 4282 3126 Size: 85 1071 3909 Fragments arranged by size: 3909 1071 85 BsmI GAATG_Cn' Cuts at: 2126 2576 2669 2126 Size: 450 93 4522 Fragments arranged by size: 4522 450 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2131 2197 2384 3126 3211 4282 1391 Size: 399 341 66 187 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 341 187 85 66 BspEI T'CCGG_A Cuts at: 4728 4728 Size: 5065 BspHI T'CATG_A Cuts at: 2954 4684 2954 Size: 1730 3335 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2420 844 Size: 1576 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2952 1394 Size: 429 1129 3507 Fragments arranged by size: 3507 1129 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2244 3560 3734 65 Size: 1183 996 1316 174 1396 Fragments arranged by size: 1396 1316 1183 996 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2103 3709 3896 1700 Size: 110 293 1606 187 2869 Fragments arranged by size: 2869 1606 293 187 110 BsrGI T'GTAC_A Cuts at: 96 2217 96 Size: 2121 2944 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5065 BssSI C'ACGA_G Cuts at: 3125 4137 3125 Size: 1012 4053 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5065 BstBI TT'CG_AA Cuts at: 3869 3869 Size: 5065 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5065 BstYI r'GATC_y Cuts at: 1972 2395 2762 3147 3164 4616 4702 4714 5060 Size: 423 367 385 17 1452 86 12 346 Cuts at: 5060 1972 Size: 1977 Fragments arranged by size: 1977 1452 423 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3574 Fragments arranged by size: 3574 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4326 Fragments arranged by size: 4326 683 56 BtsI GCAGTG_nn' Cuts at: 2231 2581 3375 3395 2231 Size: 350 794 20 3901 Fragments arranged by size: 3901 794 350 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5065 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5030 DraI TTT'AAA Cuts at: 2369 2369 Size: 5065 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4072 809 Size: 507 2756 1802 Fragments arranged by size: 2756 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2512 3401 5030 Size: 54 1425 50 275 18 682 889 1629 Cuts at: 5030 8 Size: 43 Fragments arranged by size: 1629 1425 889 682 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2512 1537 Size: 275 700 4090 Fragments arranged by size: 4090 700 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2154 2283 2995 1353 Size: 801 129 712 3423 Fragments arranged by size: 3423 801 712 129 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3652 4026 4172 387 Size: 1064 138 2063 374 146 1280 Fragments arranged by size: 2063 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2304 3128 3725 4512 4780 1239 Size: 393 672 824 597 787 268 1524 Fragments arranged by size: 1524 824 787 672 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2201 2201 Size: 5065 EcoO109I rG'GnC_Cy Cuts at: 2272 2272 Size: 5065 EcoRI G'AATT_C Cuts at: 2374 2752 2374 Size: 378 4687 EcoRV GAT'ATC Cuts at: 2147 2147 Size: 5065 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2108 2108 Size: 5065 FspI TGC'GCA Cuts at: 3571 3571 Size: 5065 HaeII r_GCGC'y Cuts at: 1678 4212 1678 Size: 2534 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2153 2185 3706 3738 3780 Size: 32 135 32 581 32 1521 32 42 Cuts at: 3780 3812 1373 Size: 32 2626 Fragments arranged by size: 2626 1521 581 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2409 2655 669 Size: 988 281 471 246 3079 Fragments arranged by size: 3079 988 471 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5065 HpaI GTT'AAC Cuts at: 2655 2655 Size: 5065 KpnI G_GTAC'C Cuts at: 2390 2390 Size: 5065 MfeI C'AATT_G Cuts at: 2664 2664 Size: 5065 MluI A'CGCG_T Cuts at: 4941 4941 Size: 5065 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2005 2039 4179 4363 1305 Size: 700 34 2140 184 2007 Fragments arranged by size: 2140 2007 700 184 34 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3243 Fragments arranged by size: 3243 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2237 3023 3382 3541 518 Size: 648 1071 786 359 159 2042 Fragments arranged by size: 2042 1071 786 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2481 3158 4306 4551 1606 Size: 875 677 1148 245 2120 Fragments arranged by size: 2120 1148 875 677 245 NaeI GCC'GGC Cuts at: 2105 2105 Size: 5065 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3574 Fragments arranged by size: 3574 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5065 NgoMIV G'CCGG_C Cuts at: 2103 2103 Size: 5065 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5065 NotI GC'GGCC_GC Cuts at: 2512 2512 Size: 5065 NspI r_CATG'y Cuts at: 1132 1229 2423 3968 1132 Size: 97 1194 1545 2229 Fragments arranged by size: 2229 1545 1194 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5065 PciI A'CATG_T Cuts at: 3964 3964 Size: 5065 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5065 PmeI GTTT'AAAC Cuts at: 2369 2369 Size: 5065 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3134 3166 4647 4679 3134 Size: 32 1481 32 3520 Fragments arranged by size: 3520 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5065 PsiI TTA'TAA Cuts at: 2635 2635 Size: 5065 PstI C_TGCA'G Cuts at: 830 2417 830 Size: 1587 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5065 SalI G'TCGA_C Cuts at: 1936 2407 1936 Size: 471 4594 SapI GCTCTTCn'nnn_ Cuts at: 2283 2283 Size: 5065 SbfI CC_TGCA'GG Cuts at: 2417 2417 Size: 5065 ScaI AGT'ACT Cuts at: 3313 5025 3313 Size: 1712 3353 SfcI C'TryA_G Cuts at: 826 1045 2413 3548 4229 4420 826 Size: 219 1368 1135 681 191 1471 Fragments arranged by size: 1471 1368 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5065 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5065 SmaI CCC'GGG Cuts at: 1872 2392 1872 Size: 520 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2093 2314 3169 4070 4332 820 Size: 197 926 150 221 855 901 262 1553 Fragments arranged by size: 1553 926 901 855 262 221 197 150 SnaBI TAC'GTA Cuts at: 493 2856 493 Size: 2363 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5065 SphI G_CATG'C Cuts at: 1132 2423 1132 Size: 1291 3774 SspI AAT'ATT Cuts at: 5 52 2989 5 Size: 47 2937 2081 Fragments arranged by size: 2937 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5065 StyI C'CwwG_G Cuts at: 513 1065 2004 2245 2328 2504 513 Size: 552 939 241 83 176 3074 Fragments arranged by size: 3074 939 552 241 176 83 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3092 3109 3262 3447 3892 325 Size: 1255 1512 17 153 185 445 1498 Fragments arranged by size: 1512 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2217 3311 5023 Size: 274 80 33 51 1443 240 1094 1712 Cuts at: 5023 96 Size: 138 Fragments arranged by size: 1712 1443 1094 274 240 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5025 5057 5025 Size: 32 5033 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5065 XbaI T'CTAG_A Cuts at: 2401 2401 Size: 5065 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5065 XmaI C'CCGG_G Cuts at: 1870 2390 1870 Size: 520 4545 XmnI GAAnn'nnTTC Cuts at: 3194 3194 Size: 5065 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2873 276 Size: 53 83 186 936 1339 2468 Fragments arranged by size: 2468 1339 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI