Result of FASTA (ccds) for
pFN21AB9740
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9740, 517 aa
1>>>pF1KB9740 517 - 517 aa - 517 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6331+/-0.000947; mu= 0.9824+/- 0.057
mean_var=297.8745+/-61.459, 0's: 0 Z-trim(115.3): 78 B-trim: 177 in 1/52
Lambda= 0.074312
statistics sampled from 15783 (15859) to 15783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.487), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12 ( 517) 3606 399.9 3.5e-111
CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17 ( 648) 784 97.5 4.9e-20
>>CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12 (517 aa)
initn: 3606 init1: 3606 opt: 3606 Z-score: 2109.5 bits: 399.9 E(32554): 3.5e-111
Smith-Waterman score: 3606; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)
10 20 30 40 50 60
pF1KB9 MIESDTSSIMSGIIRNSGQNHHPSPQEYRLLATTSDDDLPGDLQSLSWLTAVDVPRLQQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MIESDTSSIMSGIIRNSGQNHHPSPQEYRLLATTSDDDLPGDLQSLSWLTAVDVPRLQQM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ASGRVDLGGPCVPHPHPGALAGVADLHVGATPSPLLHGPAGMAPRGMPGLGPITGHRDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ASGRVDLGGPCVPHPHPGALAGVADLHVGATPSPLLHGPAGMAPRGMPGLGPITGHRDSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SQFPVGGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPPVGLYGPPFGVRPPYPQPHVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SQFPVGGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPPVGLYGPPFGVRPPYPQPHVAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 HSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 HSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARIDKMEEEMHKWKRKDLAAIHRSMANP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARIDKMEEEMHKWKRKDLAAIHRSMANP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 EELDKLISDRPESCRRPGKPGEPEAPVLTHATTVAVAHGCLAVSQLPPQPLMTLSLQSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EELDKLISDRPESCRRPGKPGEPEAPVLTHATTVAVAHGCLAVSQLPPQPLMTLSLQSVP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LHHQVQPQAHLAPDSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEVDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LHHQVQPQAHLAPDSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEVDA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 LDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDLGASGLTPASGGSDQSFPDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDLGASGLTPASGGSDQSFPDLQ
430 440 450 460 470 480
490 500 510
pF1KB9 VTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIALL
:::::::::::::::::::::::::::::::::::::
CCDS91 VTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIALL
490 500 510
>>CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17 (648 aa)
initn: 922 init1: 735 opt: 784 Z-score: 473.2 bits: 97.5 E(32554): 4.9e-20
Smith-Waterman score: 955; 41.7% identity (59.5% similar) in 482 aa overlap (77-488:152-620)
50 60 70 80 90 100
pF1KB9 SWLTAVDVPRLQQMASGRVDLGGPCVPHPHPGALAGVADLHVG-ATPSPLLHGPAGMAP-
:: : . .. : : .: : .. :
CCDS11 PFHPYKRPFHEDVFPEAETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWC
130 140 150 160 170 180
110 120 130 140 150
pF1KB9 RGMPG----LGPITGHRDSMSQFPVGGQPSSGL--QDPP--HLYSPATQPQFPLPPGAQQ
:.: :: . . . :: . ..:. .:: :.: ..:: : :
CCDS11 NGLPYPSQEHGPQVLGSEVKVKPPVL-ESGAGMFCYQPPLQHMYC-SSQPPF-----HQY
190 200 210 220 230
160 170 180 190 200 210
pF1KB9 CPPVGLYGPPFGVRPPYPQPHVAVHSSQELHPKHYPKPIYSYSCLIAMALKNSKTGSLPV
: : : :. : ..: ..: . : .:::::::: :: :::::::::::::
CCDS11 SPGGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPV
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB9 SEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARID
::::.:: ::::::::::::::::::::::::::::::::: ..::::::::::: :.::
CCDS11 SEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKID
300 310 320 330 340 350
280 290 300 310 320
pF1KB9 KMEEEMHKWKRKDLAAIHRSMANPEELDKLISDRPES-------CRRPGKPGE-PEAPVL
::.::..:::::: :...:::.:::::.::.:. :. : :: : : :.
CCDS11 KMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLA
360 370 380 390 400 410
330 340 350 360
pF1KB9 THATTVAVAHGCL-AVSQLPPQ-PLMTLSLQSVP-------LHHQV-------------Q
: :. : . .: . ::. : . .: :: . :
CCDS11 PPAGLSPPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQ
420 430 440 450 460 470
370 380 390 400 410
pF1KB9 PQAHL-------AP-DSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEV
:..:: .: ::: ::.::: :. :. : :: :. : . . :..:..
CCDS11 PDGHLELRAQPGTPQDSPLPAHTPPSHSAKLLAE---PSPA--RTMHDTLLPDGDLGTDL
480 490 500 510 520
420 430 440 450 460
pF1KB9 DALDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDL------------------
::..::. :: .::::::..::....:: : ..:: . ..
CCDS11 DAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPPQPPPHCFPPGPCLTE
530 540 550 560 570 580
470 480 490 500 510
pF1KB9 ---GASGLT-PASGGSDQSFPDLQVTGLYTAYSTPDSVAASGTSSSSQYLGAQGNKPIAL
::. :. :.:::: .. ::..: ::.:.
CCDS11 TGSGAGDLAAPGSGGSG-ALGDLHLTTLYSAFMELEPTPPTAPAGPSVYLSPSSKPVALA
590 600 610 620 630 640
pF1KB9 L
517 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:38:03 2016 done: Fri Nov 4 18:38:04 2016
Total Scan time: 3.090 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]