Result of FASTA (omim) for
pFN21AB9695
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9695, 264 aa
1>>>pF1KB9695 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0554+/-0.000288; mu= 10.9175+/- 0.018
mean_var=224.3327+/-46.011, 0's: 0 Z-trim(124.9): 211 B-trim: 53 in 1/58
Lambda= 0.085630
statistics sampled from 47283 (47553) to 47283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.558), width: 16
Scan time: 7.930
The best scores are: opt bits E(85289)
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 1834 238.1 1.2e-62
NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapie ( 304) 516 75.4 1.4e-13
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 355 55.5 1.3e-07
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 348 54.5 2.2e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 328 52.4 1.7e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 328 52.4 1.7e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 328 52.4 1.7e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 328 52.4 1.7e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 328 52.4 1.7e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 328 52.4 1.7e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 328 52.4 1.7e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 325 51.8 1.8e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 315 50.5 4.1e-06
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 317 51.0 4.3e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 51.0 4.3e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 315 50.6 4.6e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 315 50.6 4.6e-06
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 315 50.7 5.1e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 315 50.8 5.1e-06
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 315 50.8 5.1e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 315 50.8 5.1e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 315 50.8 5.1e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 315 50.8 5.1e-06
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 315 50.8 5.1e-06
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 315 50.8 5.5e-06
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 315 50.9 6.1e-06
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 312 50.3 6.3e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 310 50.1 7.2e-06
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 302 48.7 9.5e-06
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 304 49.1 9.8e-06
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 304 49.1 9.8e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 300 48.6 1.4e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 295 48.0 2.1e-05
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 295 48.0 2.1e-05
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 286 47.1 5.5e-05
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 281 46.2 6.3e-05
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 279 46.0 8e-05
>>NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapiens] (264 aa)
initn: 1834 init1: 1834 opt: 1834 Z-score: 1245.5 bits: 238.1 E(85289): 1.2e-62
Smith-Waterman score: 1834; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KB9 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
190 200 210 220 230 240
250 260
pF1KB9 EDDDELPMSPSSSGKDDRDLTVTP
::::::::::::::::::::::::
NP_663 EDDDELPMSPSSSGKDDRDLTVTP
250 260
>>NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapiens] (304 aa)
initn: 649 init1: 415 opt: 516 Z-score: 364.8 bits: 75.4 E(85289): 1.4e-13
Smith-Waterman score: 676; 44.6% identity (64.3% similar) in 294 aa overlap (21-261:25-302)
10 20 30 40 50
pF1KB9 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLC
:. .: ..: ..::: .. .:: : .::.: .:
NP_573 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC
10 20 30 40 50
60 70 80 90
pF1KB9 VCPLCVTASQLHGPPGP------------------------PALPLLKASFP--PFGSQY
::::::: :.::. : ::::::..: : .:.
NP_573 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF
60 70 80 90 100 110
100 110 120
pF1KB9 C----------HAPLGRQH--SAVSPGVAHGPAAAAAAAALYQ--------------TSY
: : : ..: . .:: : . :::::::: :.:
NP_573 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB9 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY
. :::.:::... .: ..:.:..:::::::::::::::::::.::::::::::::::::
NP_573 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB9 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD
:::::::::::::::::::::::::... .. ::::.. :... ....
NP_573 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE
240 250 260 270 280
250 260
pF1KB9 DELPMSPSSSGKDDRDLTVTP
:: .::.:.. ::....
NP_573 DEDSLSPASAN-DDKEISPL
290 300
>>NP_000200 (OMIM: 125853,260370,600733,606176,606392) p (283 aa)
initn: 460 init1: 268 opt: 355 Z-score: 257.7 bits: 55.5 E(85289): 1.3e-07
Smith-Waterman score: 367; 36.2% identity (54.1% similar) in 246 aa overlap (20-254:25-246)
10 20 30 40 50
pF1KB9 MPRSFLVDSLVLREAGEKKAPE--GSPPP-LFPYAVPPPHALHGLSPGACHARKA
::: .::: :. ::: : . ::: : .
NP_000 MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPF-PGALGALEQ
10 20 30 40 50
60 70 80 90 100
pF1KB9 GLLCVCPLCVTASQLHGPP--GPPALPLLKASFPPFGSQYC--HAPLGRQHSAVSPGVAH
: : .. .. :: ::. :. .: .: : : : .. ::: .
NP_000 G----SPPDISPYEV--PPLADDPAVAHLHHHLP---AQLALPHPPAGPFPEGAEPGVLE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB9 GPAAAAAAAALYQTSYPLPDPRQFHCIS---VDSSSNQLPS-SKRMRTAFTSTQLLELER
: . : .: . : . . .. : .:: :::.: .::::::.
NP_000 EPNRV-------QLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEK
120 130 140 150 160
170 180 190 200 210 220
pF1KB9 EFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGS
:: : :.:: ::.:.:..:::.:...::::::::.: ::: ... ::: ..::::
NP_000 EFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE---EDKKRGGGTAVGGGGV
170 180 190 200 210 220
230 240 250 260
pF1KB9 APQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
: :: : .:. :: : .:
NP_000 AEPEQDCAVTS----GEELLALPPPPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAP
230 240 250 260 270
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 370 init1: 291 opt: 348 Z-score: 253.6 bits: 54.5 E(85289): 2.2e-07
Smith-Waterman score: 353; 38.1% identity (52.4% similar) in 210 aa overlap (23-228:72-246)
10 20 30 40 50
pF1KB9 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKA
: ::: : ::: :::: :
NP_076 QRRESSFQPEAGFGRRAACTVQRYAACRDPGPPPP--PPPPPPPPPPPGLSPRA------
50 60 70 80 90
60 70 80 90 100 110
pF1KB9 GLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAA
: ::: :: : .: :.: . : : :..:
NP_076 -----------------PAPPPAGALL-----PEPGQRCEAV---SSSPPPPPCAQNPLH
100 110 120
120 130 140 150 160 170
pF1KB9 AAAAAALYQTSYPLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMY
. . . . : :. : .:. . .. : :: :::.: :.::::.:: : :
NP_076 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEP--KRSRTAYTRQQVLELEKEFHYNRY
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 LSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHR---GGGGGGAGGGGSAPQG
:.: ::.::: : :::.:.::::::::.: ::. : : . ::..:.::: . :.:
NP_076 LTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNG
190 200 210 220 230 240
230 240 250 260
pF1KB9 CKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
NP_076 GPRAL
250
>>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 384 init1: 301 opt: 328 Z-score: 237.6 bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)
10 20
pF1KB9 MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
:.. .. :: : .. : . :::
NP_705 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
: :::.: .: : . . . : . . :: : : .:: : ..
NP_705 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
100 110 120 130
90 100 110 120 130 140
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
..:: :: ::. : . : . . .. : . :.: ::
NP_705 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
:: :::.::.::.:::.:: : :: : ::.:.:. :::.:.:.::::::::.:.::. :
NP_705 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
:.. ..:: . . . .: :
NP_705 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
260 270 280 290 300 310
>>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 384 init1: 301 opt: 328 Z-score: 237.6 bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)
10 20
pF1KB9 MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
:.. .. :: : .. : . :::
XP_011 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
: :::.: .: : . . . : . . :: : : .:: : ..
XP_011 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
100 110 120 130
90 100 110 120 130 140
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
..:: :: ::. : . : . . .. : . :.: ::
XP_011 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
:: :::.::.::.:::.:: : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
:.. ..:: . . . .: :
XP_011 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
260 270 280 290 300 310
>>NP_109377 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 384 init1: 301 opt: 328 Z-score: 237.6 bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)
10 20
pF1KB9 MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
:.. .. :: : .. : . :::
NP_109 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
: :::.: .: : . . . : . . :: : : .:: : ..
NP_109 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
100 110 120 130
90 100 110 120 130 140
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
..:: :: ::. : . : . . .. : . :.: ::
NP_109 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
:: :::.::.::.:::.:: : :: : ::.:.:. :::.:.:.::::::::.:.::. :
NP_109 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
:.. ..:: . . . .: :
NP_109 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
260 270 280 290 300 310
>>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 384 init1: 301 opt: 328 Z-score: 237.6 bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)
10 20
pF1KB9 MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
:.. .. :: : .. : . :::
XP_005 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
: :::.: .: : . . . : . . :: : : .:: : ..
XP_005 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
100 110 120 130
90 100 110 120 130 140
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
..:: :: ::. : . : . . .. : . :.: ::
XP_005 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
:: :::.::.::.:::.:: : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
:.. ..:: . . . .: :
XP_005 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
260 270 280 290 300 310
>>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 384 init1: 301 opt: 328 Z-score: 237.6 bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)
10 20
pF1KB9 MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
:.. .. :: : .. : . :::
XP_005 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
: :::.: .: : . . . : . . :: : : .:: : ..
XP_005 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
100 110 120 130
90 100 110 120 130 140
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
..:: :: ::. : . : . . .. : . :.: ::
XP_005 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
:: :::.::.::.:::.:: : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
:.. ..:: . . . .: :
XP_005 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
260 270 280 290 300 310
>>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 384 init1: 301 opt: 328 Z-score: 237.6 bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)
10 20
pF1KB9 MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
:.. .. :: : .. : . :::
XP_005 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
: :::.: .: : . . . : . . :: : : .:: : ..
XP_005 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
100 110 120 130
90 100 110 120 130 140
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
..:: :: ::. : . : . . .. : . :.: ::
XP_005 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
:: :::.::.::.:::.:: : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
:.. ..:: . . . .: :
XP_005 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
260 270 280 290 300 310
264 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:23:16 2016 done: Fri Nov 4 18:23:17 2016
Total Scan time: 7.930 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]