(Circular) (Six-base) MAPSORT of: pFN21AB9682.seq Check: 9308 from: 1 to: 5152 pFN21AB9682 5152 bp With 182 enzymes: SgfI * January 16, 2009 15:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2962 278 Size: 53 83 186 936 1426 2468 Fragments arranged by size: 2468 1426 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2495 1937 Size: 558 4594 Acc65I G'GTAC_C Cuts at: 2473 2473 Size: 5152 AclI AA'CG_TT Cuts at: 1563 3279 3652 1563 Size: 1716 373 3063 Fragments arranged by size: 3063 1716 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2081 2303 3215 4599 4867 1632 Size: 449 222 912 1384 268 1917 Fragments arranged by size: 1917 1384 912 449 268 222 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4955 AflIII A'CryG_T Cuts at: 1203 4051 5028 1203 Size: 2848 977 1327 Fragments arranged by size: 2848 1327 977 AgeI A'CCGG_T Cuts at: 3983 3983 Size: 5152 AhdI GACnn_n'nnGTC Cuts at: 3881 3881 Size: 5152 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5152 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5152 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2324 2356 2324 Size: 32 5120 AlwNI CAG_nnn'CTG Cuts at: 2895 4467 2895 Size: 1572 3580 ApaI G_GGCC'C Cuts at: 2048 2048 Size: 5152 ApaLI G'TGCA_C Cuts at: 3209 4365 3209 Size: 1156 3996 ApoI r'AATT_y Cuts at: 1493 2461 2687 2839 4948 1493 Size: 968 226 152 2109 1697 Fragments arranged by size: 2109 1697 968 226 152 AscI GG'CGCG_CC Cuts at: 2156 2156 Size: 5152 AseI AT'TA_AT Cuts at: 160 1032 3706 160 Size: 872 2674 1606 Fragments arranged by size: 2674 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5152 AvaI C'yCGr_G Cuts at: 1870 1943 2357 2477 1870 Size: 73 414 120 4545 Fragments arranged by size: 4545 414 120 73 BamHI G'GATC_C Cuts at: 2482 2849 2482 Size: 367 4785 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2147 2242 2473 3928 618 Size: 325 217 627 360 95 231 1455 1842 Fragments arranged by size: 1842 1455 627 360 325 231 217 95 BanII G_rGCy'C Cuts at: 1391 2048 2386 2471 1391 Size: 657 338 85 4072 Fragments arranged by size: 4072 657 338 85 BbeI G_GCGC'C Cuts at: 2151 2151 Size: 5152 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4181 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3343 3377 1903 Size: 34 1406 34 3678 Fragments arranged by size: 3678 1406 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3044 4254 3044 Size: 1210 3942 BclI T'GATC_A Cuts at: 1548 1548 Size: 5152 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2423 3763 136 Size: 107 122 71 631 605 751 1340 1525 Fragments arranged by size: 1525 1340 751 631 605 122 107 71 BglII A'GATC_T Cuts at: 5147 5147 Size: 5152 BlpI GC'TnA_GC Cuts at: 2390 2569 2390 Size: 179 4973 Bme1580I G_kGCm'C Cuts at: 1790 2048 2247 3213 4369 1790 Size: 258 199 966 1156 2573 Fragments arranged by size: 2573 1156 966 258 199 BmgBI CAC'GTC Cuts at: 1318 2296 1318 Size: 978 4174 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2883 3841 442 Size: 416 53 83 399 24 1466 958 1753 Fragments arranged by size: 1753 1466 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5152 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2350 2350 Size: 5152 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2273 3812 1239 Size: 1034 1539 2579 Fragments arranged by size: 2579 1539 1034 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2216 3277 4142 4440 2216 Size: 1061 865 298 2928 Fragments arranged by size: 2928 1061 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3815 882 Size: 617 2316 2219 Fragments arranged by size: 2316 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2943 493 Size: 711 1739 2702 Fragments arranged by size: 2702 1739 711 BsaBI GATnn'nnATC Cuts at: 2440 5146 2440 Size: 2706 2446 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2148 2959 3341 3976 Size: 53 83 186 936 615 811 382 635 Cuts at: 3976 275 Size: 1451 Fragments arranged by size: 1451 936 811 635 615 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3585 3983 4257 4404 4815 3585 Size: 398 274 147 411 3922 Fragments arranged by size: 3922 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4927 Fragments arranged by size: 4927 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5152 BseYI C'CCAG_C Cuts at: 2048 4355 4851 2048 Size: 2307 496 2349 Fragments arranged by size: 2349 2307 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4579 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2427 2602 3363 4391 1540 Size: 275 186 426 175 761 1028 2301 Fragments arranged by size: 2301 1028 761 426 275 186 175 BsiHKAI G_wGCw'C Cuts at: 3213 3298 4369 3213 Size: 85 1071 3996 Fragments arranged by size: 3996 1071 85 BsmI GAATG_Cn' Cuts at: 2663 2756 2663 Size: 93 5059 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2048 2247 2386 2471 3213 3298 4369 Size: 399 258 199 139 85 742 85 1071 Cuts at: 4369 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 399 258 199 139 85 85 BspEI T'CCGG_A Cuts at: 4815 4815 Size: 5152 BspHI T'CATG_A Cuts at: 3041 4771 3041 Size: 1730 3422 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2176 2507 844 Size: 1332 331 3489 Fragments arranged by size: 3489 1332 331 BsrBI CCG'CTC Cuts at: 1394 1823 2082 2389 3039 1394 Size: 429 259 307 650 3507 Fragments arranged by size: 3507 650 429 307 259 BsrDI GCAATG_nn' Cuts at: 65 1248 3647 3821 65 Size: 1183 2399 174 1396 Fragments arranged by size: 2399 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2066 2374 3796 3983 1700 Size: 110 256 308 1422 187 2869 Fragments arranged by size: 2869 1422 308 256 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5152 BssHII G'CGCG_C Cuts at: 1925 2055 2156 1925 Size: 130 101 4921 Fragments arranged by size: 4921 130 101 BssSI C'ACGA_G Cuts at: 3212 4224 3212 Size: 1012 4140 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5152 BstBI TT'CG_AA Cuts at: 3956 3956 Size: 5152 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5152 BstYI r'GATC_y Cuts at: 1972 2435 2441 2482 2849 3234 3251 4703 4789 Size: 463 6 41 367 385 17 1452 86 Cuts at: 4789 4801 5147 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 463 385 367 346 86 41 17 12 6 BtgI C'CryG_G Cuts at: 513 1065 2040 513 Size: 552 975 3625 Fragments arranged by size: 3625 975 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4413 Fragments arranged by size: 4413 683 56 BtsI GCAGTG_nn' Cuts at: 2668 3462 3482 2668 Size: 794 20 4338 Fragments arranged by size: 4338 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5152 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5117 DraI TTT'AAA Cuts at: 2456 2456 Size: 5152 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4159 809 Size: 507 2843 1802 Fragments arranged by size: 2843 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2124 2424 2599 Size: 54 1425 50 275 18 294 300 175 Cuts at: 2599 3488 5117 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 300 294 275 175 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2424 2599 1537 Size: 275 612 175 4090 Fragments arranged by size: 4090 612 275 175 EarI CTCTTCn'nnn_ Cuts at: 1353 3082 1353 Size: 1729 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3739 4113 4259 387 Size: 1064 138 2150 374 146 1280 Fragments arranged by size: 2150 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2081 2273 2303 3215 3812 4599 4867 Size: 393 449 192 30 912 597 787 268 Cuts at: 4867 1239 Size: 1524 Fragments arranged by size: 1524 912 787 597 449 393 268 192 30 EcoO109I rG'GnC_Cy Cuts at: 2045 2314 2352 2045 Size: 269 38 4845 Fragments arranged by size: 4845 269 38 EcoRI G'AATT_C Cuts at: 2461 2839 2461 Size: 378 4774 FspI TGC'GCA Cuts at: 3658 3658 Size: 5152 HaeII r_GCGC'y Cuts at: 1678 2151 2418 4299 1678 Size: 473 267 1881 2531 Fragments arranged by size: 2531 1881 473 267 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2420 2452 3793 3825 3867 Size: 32 135 32 848 32 1341 32 42 Cuts at: 3867 3899 1373 Size: 32 2626 Fragments arranged by size: 2626 1341 848 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2496 2742 669 Size: 988 281 558 246 3079 Fragments arranged by size: 3079 988 558 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5152 HpaI GTT'AAC Cuts at: 2742 2742 Size: 5152 KasI G'GCGC_C Cuts at: 2147 2147 Size: 5152 KpnI G_GTAC'C Cuts at: 2477 2477 Size: 5152 MfeI C'AATT_G Cuts at: 2751 2751 Size: 5152 MluI A'CGCG_T Cuts at: 5028 5028 Size: 5152 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2304 2469 4266 4450 1305 Size: 999 165 1797 184 2007 Fragments arranged by size: 2007 1797 999 184 165 MscI TGG'CCA Cuts at: 10 64 1489 1832 2126 10 Size: 54 1425 343 294 3036 Fragments arranged by size: 3036 1425 343 294 54 MslI CAynn'nnrTG Cuts at: 518 1166 3110 3469 3628 518 Size: 648 1944 359 159 2042 Fragments arranged by size: 2042 1944 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2042 2052 2568 3245 4393 4638 1606 Size: 436 10 516 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 516 436 245 10 NaeI GCC'GGC Cuts at: 2068 2068 Size: 5152 NarI GG'CG_CC Cuts at: 2148 2148 Size: 5152 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4600 NdeI CA'TA_TG Cuts at: 387 387 Size: 5152 NgoMIV G'CCGG_C Cuts at: 2066 2066 Size: 5152 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5152 NotI GC'GGCC_GC Cuts at: 2599 2599 Size: 5152 NspI r_CATG'y Cuts at: 1132 1229 2510 4055 1132 Size: 97 1281 1545 2229 Fragments arranged by size: 2229 1545 1281 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5152 PciI A'CATG_T Cuts at: 4051 4051 Size: 5152 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5152 PmeI GTTT'AAAC Cuts at: 2456 2456 Size: 5152 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3221 3253 4734 4766 3221 Size: 32 1481 32 3607 Fragments arranged by size: 3607 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2314 2352 2314 Size: 38 5114 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5152 PsiI TTA'TAA Cuts at: 2722 2722 Size: 5152 PspOMI G'GGCC_C Cuts at: 2044 2044 Size: 5152 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2204 2236 2204 Size: 32 5120 PstI C_TGCA'G Cuts at: 830 2504 830 Size: 1674 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5152 PvuII CAG'CTG Cuts at: 2052 2052 Size: 5152 RsrII CG'GwC_CG Cuts at: 2377 2377 Size: 5152 SacII CC_GC'GG Cuts at: 2043 2043 Size: 5152 SalI G'TCGA_C Cuts at: 1936 2494 1936 Size: 558 4594 SanDI GG'GwC_CC Cuts at: 2352 2352 Size: 5152 SbfI CC_TGCA'GG Cuts at: 2504 2504 Size: 5152 ScaI AGT'ACT Cuts at: 3400 5112 3400 Size: 1712 3440 SfcI C'TryA_G Cuts at: 826 1045 2500 3635 4316 4507 826 Size: 219 1455 1135 681 191 1471 Fragments arranged by size: 1471 1455 1135 681 219 191 SfoI GGC'GCC Cuts at: 2149 2149 Size: 5152 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5152 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5152 SmaI CCC'GGG Cuts at: 1872 2359 2479 1872 Size: 487 120 4545 Fragments arranged by size: 4545 487 120 SmlI C'TyrA_G Cuts at: 820 1017 1943 2231 3256 4157 4419 820 Size: 197 926 288 1025 901 262 1553 Fragments arranged by size: 1553 1025 926 901 288 262 197 SnaBI TAC'GTA Cuts at: 493 2943 493 Size: 2450 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5152 SphI G_CATG'C Cuts at: 1132 2510 1132 Size: 1378 3774 SspI AAT'ATT Cuts at: 5 52 3076 5 Size: 47 3024 2081 Fragments arranged by size: 3024 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5152 StyI C'CwwG_G Cuts at: 513 1065 2591 513 Size: 552 1526 3074 Fragments arranged by size: 3074 1526 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3179 3196 3349 3534 3979 325 Size: 1255 1599 17 153 185 445 1498 Fragments arranged by size: 1599 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3398 5110 96 Size: 274 80 33 51 1443 1421 1712 138 Fragments arranged by size: 1712 1443 1421 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5112 5144 5112 Size: 32 5120 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5152 XbaI T'CTAG_A Cuts at: 2488 2488 Size: 5152 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5152 XmaI C'CCGG_G Cuts at: 1870 2357 2477 1870 Size: 487 120 4545 Fragments arranged by size: 4545 487 120 XmnI GAAnn'nnTTC Cuts at: 3281 3281 Size: 5152 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2960 276 Size: 53 83 186 936 1426 2468 Fragments arranged by size: 2468 1426 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AscI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PsrI PstI PvuI PvuII RsrII SacII SalI SanDI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AvrII BaeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI NruI NsiI PacI PfoI PmlI PspXI SacI SapI SexAI SfiI SrfI SwaI XcmI