(Circular) (Six-base) MAPSORT of: pFN21AB9630.seq Check: 464 from: 1 to: 5416 pFN21AB9630 5416 bp With 182 enzymes: SgfI * January 16, 2009 15:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3226 278 Size: 53 83 186 936 1690 2468 Fragments arranged by size: 2468 1690 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2759 1937 Size: 822 4594 Acc65I G'GTAC_C Cuts at: 2737 2737 Size: 5416 AclI AA'CG_TT Cuts at: 1563 3543 3916 1563 Size: 1980 373 3063 Fragments arranged by size: 3063 1980 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3479 4863 5131 1632 Size: 1847 1384 268 1917 Fragments arranged by size: 1917 1847 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5219 AflIII A'CryG_T Cuts at: 1203 4315 5292 1203 Size: 3112 977 1327 Fragments arranged by size: 3112 1327 977 AgeI A'CCGG_T Cuts at: 4247 4247 Size: 5416 AhdI GACnn_n'nnGTC Cuts at: 2554 4145 2554 Size: 1591 3825 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5416 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2333 2375 1184 Size: 1149 42 4225 Fragments arranged by size: 4225 1149 42 AlwNI CAG_nnn'CTG Cuts at: 3159 4731 3159 Size: 1572 3844 ApaLI G'TGCA_C Cuts at: 3473 4629 3473 Size: 1156 4260 ApoI r'AATT_y Cuts at: 1493 2725 2951 3103 5212 1493 Size: 1232 226 152 2109 1697 Fragments arranged by size: 2109 1697 1232 226 152 AscI GG'CGCG_CC Cuts at: 2157 2157 Size: 5416 AseI AT'TA_AT Cuts at: 160 1032 3970 160 Size: 872 2938 1606 Fragments arranged by size: 2938 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5416 AvaI C'yCGr_G Cuts at: 1870 1943 2172 2484 2741 1870 Size: 73 229 312 257 4545 Fragments arranged by size: 4545 312 257 229 73 BamHI G'GATC_C Cuts at: 2746 3113 2746 Size: 367 5049 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2223 2480 2570 2737 4192 Size: 325 217 627 436 257 90 167 1455 Cuts at: 4192 618 Size: 1842 Fragments arranged by size: 1842 1455 627 436 325 257 217 167 90 BanII G_rGCy'C Cuts at: 1391 2434 2567 2735 1391 Size: 1043 133 168 4072 Fragments arranged by size: 4072 1043 168 133 BbeI G_GCGC'C Cuts at: 2227 2227 Size: 5416 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2100 2628 928 Size: 971 201 528 3716 Fragments arranged by size: 3716 971 528 201 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3607 3641 1903 Size: 34 50 34 1586 34 3678 Fragments arranged by size: 3678 1586 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3308 4518 3308 Size: 1210 4206 BclI T'GATC_A Cuts at: 1548 1548 Size: 5416 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4027 136 Size: 107 122 71 631 605 2355 1525 Fragments arranged by size: 2355 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5411 5411 Size: 5416 BlpI GC'TnA_GC Cuts at: 2833 2833 Size: 5416 Bme1580I G_kGCm'C Cuts at: 1790 2197 2485 3477 4633 1790 Size: 407 288 992 1156 2573 Fragments arranged by size: 2573 1156 992 407 288 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5416 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2595 3147 4105 Size: 416 53 83 399 24 1178 552 958 Cuts at: 4105 442 Size: 1753 Fragments arranged by size: 1753 1178 958 552 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5416 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4076 1239 Size: 2837 2579 Bpu10I CC'TnA_GC Cuts at: 2566 2566 Size: 5416 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2039 3541 4406 4704 2039 Size: 1502 865 298 2751 Fragments arranged by size: 2751 1502 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2015 4079 882 Size: 617 516 2064 2219 Fragments arranged by size: 2219 2064 617 516 BsaAI yAC'GTr Cuts at: 493 1204 3207 493 Size: 711 2003 2702 Fragments arranged by size: 2702 2003 711 BsaBI GATnn'nnATC Cuts at: 5410 5410 Size: 5416 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2177 2224 3223 3605 Size: 53 83 186 936 644 47 999 382 Cuts at: 3605 4240 275 Size: 635 1451 Fragments arranged by size: 1451 999 936 644 635 382 186 83 53 47 BsaWI w'CCGG_w Cuts at: 3849 4247 4521 4668 5079 3849 Size: 398 274 147 411 4186 Fragments arranged by size: 4186 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5191 Fragments arranged by size: 5191 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5416 BseYI C'CCAG_C Cuts at: 2608 4619 5115 2608 Size: 2011 496 2909 Fragments arranged by size: 2909 2011 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2246 1163 Size: 573 510 4333 Fragments arranged by size: 4333 573 510 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2233 2302 2866 3627 4655 1540 Size: 275 186 232 69 564 761 1028 2301 Fragments arranged by size: 2301 1028 761 564 275 232 186 69 BsiHKAI G_wGCw'C Cuts at: 3477 3562 4633 3477 Size: 85 1071 4260 Fragments arranged by size: 4260 1071 85 BsmI GAATG_Cn' Cuts at: 2927 3020 2927 Size: 93 5323 BsmBI CGTCTCn'nnnn_ Cuts at: 2393 2393 Size: 5416 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2197 2434 2485 2567 2735 3477 3562 Size: 399 407 237 51 82 168 742 85 Cuts at: 3562 4633 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 407 399 237 168 85 82 51 BspEI T'CCGG_A Cuts at: 5079 5079 Size: 5416 BspHI T'CATG_A Cuts at: 3305 5035 3305 Size: 1730 3686 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2033 2771 844 Size: 1189 738 3489 Fragments arranged by size: 3489 1189 738 BsrBI CCG'CTC Cuts at: 1394 1823 2247 2590 3303 1394 Size: 429 424 343 713 3507 Fragments arranged by size: 3507 713 429 424 343 BsrDI GCAATG_nn' Cuts at: 65 1248 3911 4085 65 Size: 1183 2663 174 1396 Fragments arranged by size: 2663 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2143 2280 4060 4247 1700 Size: 110 333 137 1780 187 2869 Fragments arranged by size: 2869 1780 333 187 137 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5416 BssHII G'CGCG_C Cuts at: 1925 2157 1925 Size: 232 5184 BssSI C'ACGA_G Cuts at: 3476 4488 3476 Size: 1012 4404 BstAPI GCAn_nnn'nTGC Cuts at: 794 2269 794 Size: 1475 3941 BstBI TT'CG_AA Cuts at: 4220 4220 Size: 5416 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5416 BstYI r'GATC_y Cuts at: 1972 2746 3113 3498 3515 4967 5053 5065 5411 Size: 774 367 385 17 1452 86 12 346 Cuts at: 5411 1972 Size: 1977 Fragments arranged by size: 1977 1452 774 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2227 513 Size: 552 1162 3702 Fragments arranged by size: 3702 1162 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4677 Fragments arranged by size: 4677 683 56 BtsI GCAGTG_nn' Cuts at: 2068 2345 2444 2513 2932 3726 3746 2068 Size: 277 99 69 419 794 20 3738 Fragments arranged by size: 3738 794 419 277 99 69 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5416 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5381 DraI TTT'AAA Cuts at: 2720 2720 Size: 5416 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4423 809 Size: 507 3107 1802 Fragments arranged by size: 3107 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2230 2436 2863 Size: 54 1425 50 275 18 400 206 427 Cuts at: 2863 3752 5381 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 427 400 275 206 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2230 2863 1537 Size: 275 418 633 4090 Fragments arranged by size: 4090 633 418 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3346 1353 Size: 1993 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2471 4003 4377 4523 387 Size: 1064 138 882 1532 374 146 1280 Fragments arranged by size: 1532 1280 1064 882 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3479 4076 4863 5131 1239 Size: 393 1847 597 787 268 1524 Fragments arranged by size: 1847 1524 787 597 393 268 EcoRI G'AATT_C Cuts at: 2725 3103 2725 Size: 378 5038 FspI TGC'GCA Cuts at: 2273 2351 3922 2273 Size: 78 1571 3767 Fragments arranged by size: 3767 1571 78 HaeII r_GCGC'y Cuts at: 1678 2227 2258 2494 4563 1678 Size: 549 31 236 2069 2531 Fragments arranged by size: 2531 2069 549 236 31 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2540 2572 4057 4089 4131 Size: 32 135 32 968 32 1485 32 42 Cuts at: 4131 4163 1373 Size: 32 2626 Fragments arranged by size: 2626 1485 968 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2760 3006 669 Size: 988 281 822 246 3079 Fragments arranged by size: 3079 988 822 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5416 HpaI GTT'AAC Cuts at: 3006 3006 Size: 5416 KasI G'GCGC_C Cuts at: 2223 2223 Size: 5416 KpnI G_GTAC'C Cuts at: 2741 2741 Size: 5416 MfeI C'AATT_G Cuts at: 3015 3015 Size: 5416 MluI A'CGCG_T Cuts at: 5292 5292 Size: 5416 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2058 2134 4530 4714 1305 Size: 753 76 2396 184 2007 Fragments arranged by size: 2396 2007 753 184 76 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3594 Fragments arranged by size: 3594 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3374 3733 3892 518 Size: 648 2208 359 159 2042 Fragments arranged by size: 2208 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2058 2229 2832 3509 4657 4902 1606 Size: 452 171 603 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 603 452 245 171 NaeI GCC'GGC Cuts at: 2145 2282 2145 Size: 137 5279 NarI GG'CG_CC Cuts at: 2224 2224 Size: 5416 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4864 NdeI CA'TA_TG Cuts at: 387 387 Size: 5416 NgoMIV G'CCGG_C Cuts at: 2143 2280 2143 Size: 137 5279 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5416 NotI GC'GGCC_GC Cuts at: 2863 2863 Size: 5416 NruI TCG'CGA Cuts at: 2304 2304 Size: 5416 NspI r_CATG'y Cuts at: 1132 1229 2320 2774 4319 1132 Size: 97 1091 454 1545 2229 Fragments arranged by size: 2229 1545 1091 454 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5416 PciI A'CATG_T Cuts at: 4315 4315 Size: 5416 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5416 PmeI GTTT'AAAC Cuts at: 2720 2720 Size: 5416 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3485 3517 4998 5030 3485 Size: 32 1481 32 3871 Fragments arranged by size: 3871 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2240 1613 Size: 627 4789 PsiI TTA'TAA Cuts at: 2986 2986 Size: 5416 PstI C_TGCA'G Cuts at: 830 2768 830 Size: 1938 3478 PvuI CG_AT'CG Cuts at: 2001 2302 2001 Size: 301 5115 SacII CC_GC'GG Cuts at: 2230 2230 Size: 5416 SalI G'TCGA_C Cuts at: 1936 2758 1936 Size: 822 4594 SbfI CC_TGCA'GG Cuts at: 2768 2768 Size: 5416 ScaI AGT'ACT Cuts at: 3664 5376 3664 Size: 1712 3704 SfcI C'TryA_G Cuts at: 826 1045 2764 3899 4580 4771 826 Size: 219 1719 1135 681 191 1471 Fragments arranged by size: 1719 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2225 2225 Size: 5416 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5416 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5416 SmaI CCC'GGG Cuts at: 1872 2174 2486 2743 1872 Size: 302 312 257 4545 Fragments arranged by size: 4545 312 302 257 SmlI C'TyrA_G Cuts at: 820 1017 1943 2018 3520 4421 4683 820 Size: 197 926 75 1502 901 262 1553 Fragments arranged by size: 1553 1502 926 901 262 197 75 SnaBI TAC'GTA Cuts at: 493 3207 493 Size: 2714 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5416 SphI G_CATG'C Cuts at: 1132 2320 2774 1132 Size: 1188 454 3774 Fragments arranged by size: 3774 1188 454 SspI AAT'ATT Cuts at: 5 52 3340 5 Size: 47 3288 2081 Fragments arranged by size: 3288 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5416 StyI C'CwwG_G Cuts at: 513 1065 2855 513 Size: 552 1790 3074 Fragments arranged by size: 3074 1790 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3443 3460 3613 3798 4243 325 Size: 1255 1863 17 153 185 445 1498 Fragments arranged by size: 1863 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3662 5374 96 Size: 274 80 33 51 1443 1685 1712 138 Fragments arranged by size: 1712 1685 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5376 5408 5376 Size: 32 5384 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5416 XbaI T'CTAG_A Cuts at: 2752 2752 Size: 5416 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5416 XmaI C'CCGG_G Cuts at: 1870 2172 2484 2741 1870 Size: 302 312 257 4545 Fragments arranged by size: 4545 312 302 257 XmnI GAAnn'nnTTC Cuts at: 3545 3545 Size: 5416 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3224 276 Size: 53 83 186 936 1690 2468 Fragments arranged by size: 2468 1690 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AscI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NruI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SacII SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AvrII BaeI BbvCI BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SanDI SapI SexAI SfiI SrfI SwaI XcmI