FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9625, 133 aa
  1>>>pF1KB9625 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1352+/-0.000671; mu= 11.9719+/- 0.041
 mean_var=173.4179+/-35.131, 0's: 0 Z-trim(118.2): 39  B-trim: 862 in 1/52
 Lambda= 0.097393
 statistics sampled from 19083 (19125) to 19083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.868), E-opt: 0.2 (0.587), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS1204.1 NHLH1 gene_id:4807|Hs108|chr1           ( 133)  903 136.7 4.1e-33
CCDS885.1 NHLH2 gene_id:4808|Hs108|chr1            ( 135)  487 78.2 1.6e-15


>>CCDS1204.1 NHLH1 gene_id:4807|Hs108|chr1                (133 aa)
 initn: 903 init1: 903 opt: 903  Z-score: 708.0  bits: 136.7 E(32554): 4.1e-33
Smith-Waterman score: 903; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB9 MMLNSDTMELDLPPTHSETESGFSDCGGGAGPDGAGPGGPGGGQARGPEPGEPGRKDLQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MMLNSDTMELDLPPTHSETESGFSDCGGGAGPDGAGPGGPGGGQARGPEPGEPGRKDLQH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLA
               70        80        90       100       110       120

              130   
pF1KB9 ICYISYLNHVLDV
       :::::::::::::
CCDS12 ICYISYLNHVLDV
              130   

>>CCDS885.1 NHLH2 gene_id:4808|Hs108|chr1                 (135 aa)
 initn: 478 init1: 461 opt: 487  Z-score: 392.0  bits: 78.2 E(32554): 1.6e-15
Smith-Waterman score: 487; 64.3% identity (75.5% similar) in 143 aa overlap (1-133:1-135)

                10         20           30             40        50
pF1KB9 MMLNSD-TMELDLPPT-HSETES-GFSDCG--GGAG---P--DGAGPGGPGGGQARGPEP
       :::. : . . : : . ::. :: : .:    :...   :  .. : :  :.  :  :.:
CCDS88 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB9 GEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKK
               :.:::::.:::::::::::.::::::::::::::::::::::::::::::::
CCDS88 --------QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKK
                       70        80        90       100       110  

              120       130   
pF1KB9 LSKIEILRLAICYISYLNHVLDV
       :::::::::::::::::::::::
CCDS88 LSKIEILRLAICYISYLNHVLDV
            120       130     




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:47:28 2016 done: Fri Nov  4 17:47:28 2016
 Total Scan time:  1.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]