Result of FASTA (omim) for
pFN21AB9544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9544, 601 aa
1>>>pF1KB9544 601 - 601 aa - 601 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7699+/-0.000344; mu= 4.2886+/- 0.022
mean_var=206.3536+/-42.285, 0's: 0 Z-trim(121.6): 68 B-trim: 1012 in 1/58
Lambda= 0.089283
statistics sampled from 38343 (38427) to 38343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.451), width: 16
Scan time: 10.250
The best scores are: opt bits E(85289)
NP_001003681 (OMIM: 604702) HMG domain-containing ( 601) 3880 512.4 1.7e-144
XP_006724163 (OMIM: 604702) PREDICTED: HMG domain- ( 644) 3825 505.4 2.4e-142
XP_006724164 (OMIM: 604702) PREDICTED: HMG domain- ( 603) 3466 459.1 1.9e-128
XP_006724165 (OMIM: 604702) PREDICTED: HMG domain- ( 492) 3172 421.2 4.1e-117
>>NP_001003681 (OMIM: 604702) HMG domain-containing prot (601 aa)
initn: 3880 init1: 3880 opt: 3880 Z-score: 2715.2 bits: 512.4 E(85289): 1.7e-144
Smith-Waterman score: 3880; 100.0% identity (100.0% similar) in 601 aa overlap (1-601:1-601)
10 20 30 40 50 60
pF1KB9 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
550 560 570 580 590 600
pF1KB9 L
:
NP_001 L
>>XP_006724163 (OMIM: 604702) PREDICTED: HMG domain-cont (644 aa)
initn: 3822 init1: 3822 opt: 3825 Z-score: 2676.5 bits: 505.4 E(85289): 2.4e-142
Smith-Waterman score: 3825; 99.2% identity (99.5% similar) in 598 aa overlap (4-601:47-644)
10 20 30
pF1KB9 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREK
: . .::::::::::::::::::::::::
XP_006 VCALGSTEAPWPLALFSPSPRWRRSAALRRDPGEPSEDCFDGDHTFEDIGLAAGRSQREK
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB9 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB9 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB9 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB9 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB9 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB9 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
440 450 460 470 480 490
460 470 480 490 500 510
pF1KB9 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
500 510 520 530 540 550
520 530 540 550 560 570
pF1KB9 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLT
560 570 580 590 600 610
580 590 600
pF1KB9 TQLPELNGCPKQVLSNTLDNIAYIMPGL
::::::::::::::::::::::::::::
XP_006 TQLPELNGCPKQVLSNTLDNIAYIMPGL
620 630 640
>>XP_006724164 (OMIM: 604702) PREDICTED: HMG domain-cont (603 aa)
initn: 3463 init1: 3463 opt: 3466 Z-score: 2427.0 bits: 459.1 E(85289): 1.9e-128
Smith-Waterman score: 3466; 99.1% identity (99.4% similar) in 543 aa overlap (4-546:47-589)
10 20 30
pF1KB9 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREK
: . .::::::::::::::::::::::::
XP_006 VCALGSTEAPWPLALFSPSPRWRRSAALRRDPGEPSEDCFDGDHTFEDIGLAAGRSQREK
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLES
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB9 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVS
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB9 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQY
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB9 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQ
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB9 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEK
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB9 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKK
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB9 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDK
440 450 460 470 480 490
460 470 480 490 500 510
pF1KB9 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP
500 510 520 530 540 550
520 530 540 550 560 570
pF1KB9 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICALGPLACLT
:::::::::::::::::::::::::::::::::
XP_006 AKAPETEPIDVAAHLQLLGESLSLIGHRLQETESNTLDNIAYIMPGL
560 570 580 590 600
580 590 600
pF1KB9 TQLPELNGCPKQVLSNTLDNIAYIMPGL
>>XP_006724165 (OMIM: 604702) PREDICTED: HMG domain-cont (492 aa)
initn: 3172 init1: 3172 opt: 3172 Z-score: 2223.5 bits: 421.2 E(85289): 4.1e-117
Smith-Waterman score: 3172; 100.0% identity (100.0% similar) in 492 aa overlap (110-601:1-492)
80 90 100 110 120 130
pF1KB9 SDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSS
::::::::::::::::::::::::::::::
XP_006 MDLLKAITSPLAAGSKPSKKTGEKSSGSSS
10 20 30
140 150 160 170 180 190
pF1KB9 HSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB9 EKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAH
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB9 SSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKK
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB9 KKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLP
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB9 GLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSK
280 290 300 310 320 330
440 450 460 470 480 490
pF1KB9 KLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQ
340 350 360 370 380 390
500 510 520 530 540 550
pF1KB9 KKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLL
400 410 420 430 440 450
560 570 580 590 600
pF1KB9 DSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPGL
::::::::::::::::::::::::::::::::::::::::::
XP_006 DSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPGL
460 470 480 490
601 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:07:57 2016 done: Fri Nov 4 17:07:59 2016
Total Scan time: 10.250 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]