Result of FASTA (ccds) for
pFN21AB8959
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8959, 338 aa
1>>>pF1KB8959 338 - 338 aa - 338 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4935+/-0.00097; mu= 11.6652+/- 0.059
mean_var=143.4179+/-30.577, 0's: 0 Z-trim(108.6): 74 B-trim: 2 in 1/50
Lambda= 0.107096
statistics sampled from 10238 (10307) to 10238 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.317), width: 16
Scan time: 2.190
The best scores are: opt bits E(32554)
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 ( 338) 2257 360.4 1.2e-99
CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 ( 409) 1208 198.4 8.6e-51
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 ( 419) 996 165.6 6.4e-41
CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 ( 443) 522 92.4 7.4e-19
CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2 ( 500) 512 90.9 2.3e-18
CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 ( 451) 508 90.3 3.3e-18
CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX ( 361) 496 88.3 1e-17
CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 ( 436) 492 87.8 1.8e-17
CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 ( 438) 492 87.8 1.8e-17
CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3 ( 291) 479 85.6 5.5e-17
CCDS46873.1 POU1F1 gene_id:5449|Hs108|chr3 ( 317) 478 85.5 6.5e-17
CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1 ( 703) 450 81.5 2.3e-15
CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1 ( 755) 450 81.5 2.4e-15
CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1 ( 766) 450 81.5 2.4e-15
CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6 ( 360) 444 80.3 2.7e-15
CCDS55274.1 POU5F1B gene_id:5462|Hs108|chr8 ( 359) 430 78.1 1.2e-14
CCDS31803.1 POU6F1 gene_id:5463|Hs108|chr12 ( 301) 386 71.2 1.2e-12
CCDS81691.1 POU6F1 gene_id:5463|Hs108|chr12 ( 611) 386 71.5 1.9e-12
CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7 ( 655) 381 70.8 3.5e-12
>>CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5 (338 aa)
initn: 2257 init1: 2257 opt: 2257 Z-score: 1902.3 bits: 360.4 E(32554): 1.2e-99
Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)
10 20 30 40 50 60
pF1KB8 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPS
250 260 270 280 290 300
310 320 330
pF1KB8 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
::::::::::::::::::::::::::::::::::::::
CCDS42 SEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
310 320 330
>>CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4 (409 aa)
initn: 1377 init1: 979 opt: 1208 Z-score: 1025.3 bits: 198.4 E(32554): 8.6e-51
Smith-Waterman score: 1506; 70.7% identity (86.3% similar) in 335 aa overlap (22-336:78-407)
10 20 30 40 50
pF1KB8 MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDE
:: .:::::::.:::.: .::::..::
CCDS34 SSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPP--SNIFGGLDE
50 60 70 80 90 100
60 70 80 90 100
pF1KB8 SLLARAEALAAVDIVSHGKNH--------PFKPDATYHTMSSVPCTS--TSSTVPISHPA
::::::::::::::::..:.: :::::::::::...:::: .::.::::::.
CCDS34 SLLARAEALAAVDIVSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPS
110 120 130 140 150 160
110 120 130 140 150
pF1KB8 ALTS---------HPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAM
::.. : :: ::.:::.::::.:: :.......:. .:. . : :...:
CCDS34 ALAGTHHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATM
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 GHLHQA-MGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAA
. .::: ..:.: : . : . :.:::..:::.:::::::::::::::::::::::.:
CCDS34 NPMHQAALSMAHAHGLPSHMG---CMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSA
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 LANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNG
:::::::::::::::::::::::::::::::::::.::::::::: ..::: .:::::::
CCDS34 LANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNG
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 SERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
.:.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
350 360 370 380 390 400
pF1KB8 MKYSAVH
:::::
CCDS34 MKYSAGI
>>CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13 (419 aa)
initn: 1451 init1: 945 opt: 996 Z-score: 848.2 bits: 165.6 E(32554): 6.4e-41
Smith-Waterman score: 1223; 59.6% identity (69.4% similar) in 376 aa overlap (49-338:50-419)
20 30 40 50 60 70
pF1KB8 PKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEALAAVDI-VSHGKNHPFKPD
.::.::::::::::::: ::.::.::::::
CCDS31 HKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEALAAVDIAVSQGKSHPFKPD
20 30 40 50 60 70
80 90 100 110 120
pF1KB8 ATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLE-GDLLEHIS-PTLSV------
::::::.:::::::: :::..: : :: ::.:: ::::.::: :.:..
CCDS31 ATYHTMNSVPCTSTS-TVPLAH-----HHHHHHHHQALEPGDLLDHISSPSLALMAGAGG
80 90 100 110 120 130
130 140
pF1KB8 ---------------------------------------SGLGAPEHSVMPAQIHPH-HL
.: :.: ... .. ::: :.
CCDS31 AGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHM
140 150 160 170 180 190
150 160 170
pF1KB8 GAMGHL-HQAM--------GMSHPHTVAP---HSAMPAC---------------------
..::: : : :. :: :: :.: :
CCDS31 HSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAA
200 210 220 230 240 250
180 190 200 210 220 230
pF1KB8 ----LSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFE
. : ..:::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS31 GLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICRFE
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB8 SLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAY
::::::::::::::.:::::::::.: ::: .:::::::.:.::::::::::::::::::
CCDS31 SLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAY
320 330 340 350 360 370
300 310 320 330
pF1KB8 FAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
::.::::::::::::::::::::::::::::::::::::::.::..
CCDS31 FAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY
380 390 400 410
>>CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6 (443 aa)
initn: 535 init1: 364 opt: 522 Z-score: 452.1 bits: 92.4 E(32554): 7.4e-19
Smith-Waterman score: 537; 43.2% identity (66.9% similar) in 236 aa overlap (117-332:186-412)
90 100 110 120 130
pF1KB8 PCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGL----GAP----EHS
: :: . .:...:.:. : : .:.
CCDS50 HHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLL-YSQPSFTVNGMLGAGGQPAGLHHHG
160 170 180 190 200 210
140 150 160 170 180
pF1KB8 VMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHS-------AMPACLSDVESD---PR--E
. :. .::: : : :::: : . :. : .:: : .
CCDS50 LRDAHDEPHHADHHPHPH-----SHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDD
220 230 240 250 260
190 200 210 220 230 240
pF1KB8 LEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKP
:: ::..::::::::: :::::: ::..: : . .::.::::::.: :: .:: :::
CCDS50 LEQFAKQFKQRRIKLGFTQADVGLALGTLY--G-NVFSQTTICRFEALQLSFKNMCKLKP
270 280 290 300 310 320
250 260 270 280 290 300
pF1KB8 VLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAA
.:. :::::... .: .. .....::::: . : .::..: :.::...:..
CCDS50 LLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITS
330 340 350 360 370 380
310 320 330
pF1KB8 IAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
.:..:.:.:.::::::::.:::.:::
CCDS50 LADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ
390 400 410 420 430 440
>>CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2 (500 aa)
initn: 542 init1: 362 opt: 512 Z-score: 443.1 bits: 90.9 E(32554): 2.3e-18
Smith-Waterman score: 540; 37.0% identity (61.0% similar) in 305 aa overlap (37-332:176-464)
10 20 30 40 50 60
pF1KB8 KQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNI--FGSFDESLLARAEALAAVD
: : ::. .:. . : : : ::.
CCDS33 GPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAH
150 160 170 180 190 200
70 80 90 100 110 120
pF1KB8 IVSHGKNHPFKPDATYHTMS---SVPCTSTSSTVPISHPAALTSHPHHAVHQGL-EGDLL
. : . .. :.. ... .: .. : . .. . . :: :: .::
CCDS33 LPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGD--
210 220 230 240 250 260
130 140 150 160 170
pF1KB8 EHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMSHP--HTVAPHSAMPACLS
.: :. .: . : :::: . : . : . : .. ::: . :
CCDS33 ---TPELAEHH-HHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTS
270 280 290 300 310
180 190 200 210 220 230
pF1KB8 DVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLS
: .:: ::..::::::::: :::::: ::..: :.. ::.::::::.: ::
CCDS33 D------DLEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLS
320 330 340 350 360
240 250 260 270 280 290
pF1KB8 HNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQP
.:: :::.:. :::::... .: .. .....::::: . : .::..: :
CCDS33 FKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCP
370 380 390 400 410 420
300 310 320 330
pF1KB8 RPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH
.::...:. .:..:.:.:.::::::::.:::.:::
CCDS33 KPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTP
430 440 450 460 470 480
CCDS33 PPHHGLQTSVQ
490 500
>>CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1 (451 aa)
initn: 550 init1: 352 opt: 508 Z-score: 440.3 bits: 90.3 E(32554): 3.3e-18
Smith-Waterman score: 523; 44.0% identity (67.1% similar) in 234 aa overlap (108-336:188-401)
80 90 100 110 120 130
pF1KB8 ATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQ-GLEGDLLEHISPTLSVSGLGAPE
:::.:. : :..: : : ::
CCDS30 LYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHL-----GAHG
160 170 180 190 200 210
140 150 160 170 180 190
pF1KB8 HSVMPAQIHPHHLG---AMGHLHQAMGMSHPHTVAPHSAMPACLSDVESDPRELEAFAER
: :. : : : : .::: . : . .:. :: : :: .:: ::..
CCDS30 H----AHGHAHAGGLHAAAAHLHPGAG-GGGSSVGEHSDEDAPSSD------DLEQFAKQ
220 230 240 250 260
200 210 220 230 240 250
pF1KB8 FKQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWL
::::::::: :::::: ::..: :.. ::.::::::.: :: .:: :::.:. ::
CCDS30 FKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWL
270 280 290 300 310
260 270 280 290 300 310
pF1KB8 EEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLD
::.... .. .. .....::::: . : .::..: :.::...:...:..:.
CCDS30 EETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQ
320 330 340 350 360 370
320 330
pF1KB8 LKKNVVRVWFCNQRQKQKRMKYSAVH
:.:.::::::::.:::.::: .:
CCDS30 LEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSAPPPPPPAA
380 390 400 410 420 430
>>CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX (361 aa)
initn: 519 init1: 357 opt: 496 Z-score: 431.5 bits: 88.3 E(32554): 1e-17
Smith-Waterman score: 511; 39.2% identity (62.7% similar) in 268 aa overlap (66-332:101-336)
40 50 60 70 80 90
pF1KB8 LPAPQLQGNIFGSFDESLLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTV
:.: . : .:.: : .: : .:.
CCDS14 LATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAW--GASPAPNPSITSS-
80 90 100 110 120
100 110 120 130 140 150
pF1KB8 PISHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHL
..: . :.: .: . .::: . :. .: .:. :. .: : .:
CCDS14 --GQPLNVYSQPGFTV-----SGMLEHGG--LTPPPAAASAQSLHPVLREPPDHGELGS-
130 140 150 160 170
160 170 180 190 200 210
pF1KB8 HQAMGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANL
: :: . :: ::: ::..::::::::: :::::: ::..:
CCDS14 ---------HHCQDHSDEETPTSD------ELEQFAKQFKQRRIKLGFTQADVGLALGTL
180 190 200 210 220
220 230 240 250 260 270
pF1KB8 KIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSER
:.. ::.::::::.: :: .:: :::.:. :::::... .: .. ...
CCDS14 ----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRK
230 240 250 260 270
280 290 300 310 320 330
pF1KB8 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKY
..::::: . : ::..: :.:....:...:..:.:.:.::::::::.:::.:::
CCDS14 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTP
280 290 300 310 320 330
pF1KB8 SAVH
CCDS14 PGDQQPHEVYSHTVKTDTSCHDL
340 350 360
>>CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11 (436 aa)
initn: 489 init1: 216 opt: 492 Z-score: 427.1 bits: 87.8 E(32554): 1.8e-17
Smith-Waterman score: 500; 39.8% identity (62.8% similar) in 266 aa overlap (83-332:80-339)
60 70 80 90 100
pF1KB8 LLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISH----PAALTSHPH
... :: . .: :... :. : : .
CCDS84 LSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQ
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB8 HAV------HQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMS
. .:::. .:: : . ::: :. . :. : : : . .
CCDS84 FLLSQTQPGQQGLQPNLLPF--PQQQ-SGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEA
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB8 HPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGS
: .:. . .: :: .::: ::. ::::::::: ::.::: :.. :. : ..
CCDS84 SQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-ND
170 180 190 200 210 220
230 240 250 260 270
pF1KB8 LSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-----SKPELFNGSERKRK
.::.:: :::.:.:: .:: :::.:. ::..::.. . . : : : . ::::
CCDS84 FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRK
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB8 -RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA
:::: . . .:: : .:.::::.:. :::.:...:.::::::::.:::.::.
CCDS84 KRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPV
290 300 310 320 330 340
pF1KB8 VH
CCDS84 ATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSP
350 360 370 380 390 400
>>CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11 (438 aa)
initn: 489 init1: 216 opt: 492 Z-score: 427.1 bits: 87.8 E(32554): 1.8e-17
Smith-Waterman score: 500; 39.8% identity (62.8% similar) in 266 aa overlap (83-332:82-341)
60 70 80 90 100
pF1KB8 LLARAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTSTSSTVPISH----PAALTSHPH
... :: . .: :... :. : : .
CCDS58 LSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 HAV------HQGLEGDLLEHISPTLSVSGLGAPEHSVMPAQIHPHHLGAMGHLHQAMGMS
. .:::. .:: : . ::: :. . :. : : : . .
CCDS58 FLLSQTQPGQQGLQPNLLPF--PQQQ-SGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEA
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 HPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGS
: .:. . .: :: .::: ::. ::::::::: ::.::: :.. :. : ..
CCDS58 SQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-ND
170 180 190 200 210 220
230 240 250 260 270
pF1KB8 LSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKN-----SKPELFNGSERKRK
.::.:: :::.:.:: .:: :::.:. ::..::.. . . : : : . ::::
CCDS58 FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRK
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB8 -RTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSA
:::: . . .:: : .:.::::.:. :::.:...:.::::::::.:::.::.
CCDS58 KRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPV
290 300 310 320 330 340
pF1KB8 VH
CCDS58 ATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSP
350 360 370 380 390 400
>>CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3 (291 aa)
initn: 493 init1: 223 opt: 479 Z-score: 418.4 bits: 85.6 E(32554): 5.5e-17
Smith-Waterman score: 480; 40.0% identity (61.9% similar) in 270 aa overlap (86-335:13-275)
60 70 80 90 100 110
pF1KB8 RAEALAAVDIVSHGKNHPFKPDATYHTMSSVPCTS-TSSTVP-ISHPAALTSHP--HHAV
.: .: .:.:.: : : .: : .::.
CCDS29 MSCQAFTSADTFIPLNSDASATLPLIMHHSAAECLPVSNHAT
10 20 30 40
120 130 140 150 160
pF1KB8 HQGLEGDLLEHISPTLSV----SGLGAPEHSVMPAQIH-PHHLGAMGH--LHQAMGMSHP
. . :.. :. : :. :. : . : : . : .:: . :
CCDS29 NVMSTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDP
50 60 70 80 90 100
170 180 190 200 210
pF1KB8 ------HTVAPHSAMPACLSDVES-DPRELEAFAERFKQRRIKLGVTQADVGAALANLKI
. . .: . :..: . :::: ::..:: :::::: ::..:: ::: ..
CCDS29 TAADFKQELRRKSKLVEEPIDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVH-
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB8 PGVGS-LSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKR
:: .::.::::::.: :: .: :: .:. :::::: . : : ...::::
CCDS29 ---GSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYNEK---VGANERKR
170 180 190 200 210
280 290 300 310 320 330
pF1KB8 KR-TSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS
:: :.:. : .:: .:. : .:::..: .::.:.:.:.::::::::.::..::.: :
CCDS29 KRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTS
220 230 240 250 260 270
pF1KB8 AVH
CCDS29 LNQSLFSISKEHLECR
280 290
338 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:41:26 2016 done: Fri Nov 4 16:41:26 2016
Total Scan time: 2.190 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]