Result of FASTA (omim) for
pFN21AB8958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8958, 335 aa
1>>>pF1KB8958 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5476+/-0.000322; mu= 12.5662+/- 0.020
mean_var=165.7736+/-33.816, 0's: 0 Z-trim(120.9): 273 B-trim: 28 in 1/58
Lambda= 0.099613
statistics sampled from 36346 (36666) to 36346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.43), width: 16
Scan time: 8.850
The best scores are: opt bits E(85289)
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 2317 344.5 1.9e-94
NP_705873 (OMIM: 142955,601536) homeobox protein H ( 137) 846 132.7 4.5e-31
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 625 101.3 2.7e-21
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 525 87.0 6.1e-17
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 338 60.0 6.5e-09
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 338 60.0 6.5e-09
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 331 59.0 1.3e-08
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 323 57.8 2.8e-08
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 321 57.5 3.4e-08
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 317 57.1 6.4e-08
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 313 56.5 8.9e-08
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 309 55.9 1.3e-07
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 304 55.2 2.2e-07
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 295 53.8 4.8e-07
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 289 52.9 7.7e-07
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 289 52.9 8.3e-07
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 287 52.6 9.7e-07
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 290 53.4 1.1e-06
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 285 52.3 1.1e-06
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 285 52.3 1.1e-06
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 285 52.3 1.1e-06
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 285 52.4 1.3e-06
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 285 52.4 1.4e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 52.9 1.5e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 52.9 1.5e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 287 52.9 1.5e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 52.9 1.5e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 287 52.9 1.5e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 52.9 1.5e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 52.9 1.5e-06
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 286 52.7 1.5e-06
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 285 52.6 1.8e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 285 52.6 1.8e-06
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 280 51.6 2e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 278 51.3 2.3e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 279 51.6 2.5e-06
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 274 50.5 2.7e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 279 51.7 2.8e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 279 51.7 2.8e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 279 51.7 2.9e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 279 51.8 3.2e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 279 51.8 3.2e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 279 51.8 3.2e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 279 51.8 3.2e-06
>>NP_005513 (OMIM: 142955,601536) homeobox protein Hox-A (335 aa)
initn: 2317 init1: 2317 opt: 2317 Z-score: 1816.8 bits: 344.5 E(85289): 1.9e-94
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP
250 260 270 280 290 300
310 320 330
pF1KB8 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
:::::::::::::::::::::::::::::::::::
NP_005 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
310 320 330
>>NP_705873 (OMIM: 142955,601536) homeobox protein Hox-A (137 aa)
initn: 846 init1: 846 opt: 846 Z-score: 678.9 bits: 132.7 E(85289): 4.5e-31
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
NP_705 RSLSLPRIGDIFSSADF
130
>>NP_002135 (OMIM: 142968,614744) homeobox protein Hox-B (301 aa)
initn: 614 init1: 377 opt: 625 Z-score: 503.2 bits: 101.3 E(85289): 2.7e-21
Smith-Waterman score: 731; 45.9% identity (67.1% similar) in 340 aa overlap (1-328:1-301)
10 20 30 40 50
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV
:: :::::::::. . : :. ::.. : :.: : : ...: ... :. : :
NP_002 MDYNRMNSFLEYPLCNRGPSAY-SAHSAP-----TSFPPSSAQAVDSYASEGRY--GGG-
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN
..:: ... . :: . . .:. : :. ..:.:::: : . : :.
NP_002 -LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYG------PSQYYPLG
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 Q-EADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSL
: :.: ::: . :. :...:.. .::..:..: : : ::.:. .
NP_002 QSEGD--GGYFH--PSSYGAQLGG-------LSDGYGAGGAGPGPYPPQHPPYGNEQTAS
110 120 130 140 150
180 190 200 210 220 230
pF1KB8 ALATYNNSLSPLHASHQEACRSPASETSSP-AQTFDWMKVKRNPPKTGKVGEYGYLGQPN
.: . :: ... : : :: ..: :.::::::::::::::.::.: : ::.:.
NP_002 FAPAYADLLS---EDKETPC--P-SEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPS
160 170 180 190 200
240 250 260 270 280 290
pF1KB8 AVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE
..::::::.:::::::::::::::.:::::::::.:.:::::::::::::::::::::.:
NP_002 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE
210 220 230 240 250 260
300 310 320 330
pF1KB8 -GLLPISPATPPGND-EKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
: .: :: ::: : : ..:..:. . ::.: ::
NP_002 EGRVP--PA-PPGCPKEAAGDASDQSTCTSPEASPSSVTS
270 280 290 300
>>NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [Homo (328 aa)
initn: 535 init1: 499 opt: 525 Z-score: 425.1 bits: 87.0 E(85289): 6.1e-17
Smith-Waterman score: 535; 37.0% identity (58.7% similar) in 341 aa overlap (6-328:1-328)
10 20 30 40 50
pF1KB8 MDNARMNSFLEYPILSS-----GDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLV
:.:.::: :: :: . . . :: : ...: .: :: :.
NP_078 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGN---GDGAFVS
10 20 30 40 50
60 70 80 90 100
pF1KB8 GRGVQIGSPHHHHHHHHHHPQ---PATYQTS-----GNL--GVSYSHSSCGPSYGSQNFS
. . : .:. ::. : . : :.. . .. : .:: . .
NP_078 CLPLAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 APYS-PYALNQEADVSGGYPQCAP-AVYSGNLSSPMVQHHHHHQGYAGGAVGS-PQYIHH
:. : .:.. :: .:.. . : ::.::. .: ... . . .. : : : ..
NP_078 PAYDFPGVLGRAADDGGSHVHYATSAVFSGG-GSFLLSGQVDYAAF--GEPGPFPACLKA
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 SYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGE
: . .. : :: ... .. :::: . .::.::::::: : ::..:
NP_078 SADGHPGAFQTA------SPAPGTYPKSV-SPASGLPAAFSTFEWMKVKRNASKKGKLAE
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB8 YGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRM
:: . .:.::::.::::::::::::::::::::::.::: :.::.::::::::::::
NP_078 YGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRM
230 240 250 260 270 280
290 300 310 320 330
pF1KB8 KQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
::::::.:::: . . : . . . : ..: :: .. :
NP_078 KQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS
290 300 310 320
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 397 init1: 260 opt: 338 Z-score: 281.0 bits: 60.0 E(85289): 6.5e-09
Smith-Waterman score: 338; 36.3% identity (53.5% similar) in 215 aa overlap (101-302:24-229)
80 90 100 110 120
pF1KB8 HHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAP-YSP--YALNQEADVSGGYPQCA
::: : .:: :. ..:. . . .
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELY
10 20 30 40 50
130 140 150 160 170 180
pF1KB8 PAVYSGNLSSPMVQHHHHHQGYAGGAVG-SPQYIHHSYGQEHQSLA----LATYNNSLSP
: : : :. :.. : .: : . .. ::: :. . : ::
NP_055 PPP-PPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSP
60 70 80 90 100 110
190 200 210 220 230
pF1KB8 LH-ASHQEACRSPASETSSPAQTFDWMKVKR----NPPKTGKVGEYGYLGQPNAVRTNFT
: : : :.: .:. .. ::: . :: .: :.:. :: .:
NP_055 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNG--------GEPKRSRTAYT
120 130 140 150 160
240 250 260 270 280 290
pF1KB8 TKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISP
.:. :::::::.:.:::: ::.::: :: :.: :.:::::::::: :: .. .
NP_055 RQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRS
170 180 190 200 210 220
300 310 320 330
pF1KB8 ATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
: : :
NP_055 APPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
230 240 250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 397 init1: 260 opt: 338 Z-score: 281.0 bits: 60.0 E(85289): 6.5e-09
Smith-Waterman score: 338; 36.3% identity (53.5% similar) in 215 aa overlap (101-302:24-229)
80 90 100 110 120
pF1KB8 HHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAP-YSP--YALNQEADVSGGYPQCA
::: : .:: :. ..:. . . .
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELY
10 20 30 40 50
130 140 150 160 170 180
pF1KB8 PAVYSGNLSSPMVQHHHHHQGYAGGAVG-SPQYIHHSYGQEHQSLA----LATYNNSLSP
: : : :. :.. : .: : . .. ::: :. . : ::
NP_705 PPP-PPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSP
60 70 80 90 100 110
190 200 210 220 230
pF1KB8 LH-ASHQEACRSPASETSSPAQTFDWMKVKR----NPPKTGKVGEYGYLGQPNAVRTNFT
: : : :.: .:. .. ::: . :: .: :.:. :: .:
NP_705 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNG--------GEPKRSRTAYT
120 130 140 150 160
240 250 260 270 280 290
pF1KB8 TKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISP
.:. :::::::.:.:::: ::.::: :: :.: :.:::::::::: :: .. .
NP_705 RQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRS
170 180 190 200 210 220
300 310 320 330
pF1KB8 ATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
: : :
NP_705 APPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
230 240 250 260
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 323 init1: 257 opt: 331 Z-score: 275.4 bits: 59.0 E(85289): 1.3e-08
Smith-Waterman score: 331; 30.8% identity (52.9% similar) in 263 aa overlap (47-298:10-264)
20 30 40 50 60 70
pF1KB8 SGDSGTCSARAYPSDHRITTFQSCAVSANSCG----GDDRFLVGRGVQIGSPHHHHHHHH
:: : : : . : . . .. .
NP_061 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSAS
10 20 30
80 90 100 110 120
pF1KB8 HHPQPATYQTSG-NLGVSYS---HSSCGP---SYGSQNFSAPYSPYALNQEADVSGGYPQ
: : .: .:.:. : : . : ::... .:: : .: : .: ::
NP_061 MHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPA-TSTHSPQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 CAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHA
: :. :: . :: .. ... :. .. . ..... :. . .: .
NP_061 PDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 SHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELE
. : :. . : . ::. . . ..: : :. .:: .: : :::
NP_061 EQASAQSEPSPAPPAQPQIYPWMR--KLHISHDNIG--GPEGK--RARTAYTRYQTLELE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 KEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDE
::::::.:::: ::.::: .: :.: :.:::::::::: :: .: . .. :
NP_061 KEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
220 230 240 250 260 270
310 320 330
pF1KB8 KAEESSEKSSSSPCVPSPGSSTSDTLTTSH
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 315 init1: 264 opt: 323 Z-score: 269.5 bits: 57.8 E(85289): 2.8e-08
Smith-Waterman score: 332; 34.8% identity (54.2% similar) in 227 aa overlap (99-322:37-238)
70 80 90 100 110 120
pF1KB8 HHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVSGGYPQCAP
::. .: ..: .: . : : :
NP_055 MVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDF-GEQP----
10 20 30 40 50 60
130 140 150 160 170 180
pF1KB8 AVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQ
..:. .: . .: :. :. :.. : : : .: :
NP_055 --FGGSGPGPGSALPARGHGQEPGGPGG----HYAAPGEPCPAPPAPPPAPLPGARAYSQ
70 80 90 100 110
190 200 210 220 230 240
pF1KB8 EACRSPASETS--SPAQTFDWMK-VKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELE
..: : :. .:: .. ::: :. : . . .: :.:. :: .: .:. :::
NP_055 SDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTG-----GEPKRSRTAYTRQQVLELE
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB8 KEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDE
::::::.:::: ::.::: .: :.: :.:::::::::: :: .: : . .
NP_055 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK---------LPNTKGR
180 190 200 210 220
310 320 330
pF1KB8 KAEESSEKSSSSPCVPSPGSSTSDTLTTSH
.. :: .: :: .::
NP_055 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>XP_005257332 (OMIM: 142967) PREDICTED: homeobox protei (247 aa)
initn: 304 init1: 304 opt: 321 Z-score: 268.1 bits: 57.5 E(85289): 3.4e-08
Smith-Waterman score: 321; 47.9% identity (68.4% similar) in 117 aa overlap (208-322:12-127)
180 190 200 210 220 230
pF1KB8 NSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVG--EYGYLGQPNAVRTN
.. .: ::.. .: : : : .::
XP_005 MLCPDPGRGCRLERERRKPKSNGLGLPEAGG-GGARRLRTA
10 20 30 40
240 250 260 270 280 290
pF1KB8 FTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPI
.:. :: :::::::::::: : ::::::: :.:.: :::.::::::::.:.. .. :
XP_005 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPD
50 60 70 80 90 100
300 310 320 330
pF1KB8 SPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
. . :: : . .:. ..:: ::
XP_005 GEPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEG
110 120 130 140 150 160
>>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo (356 aa)
initn: 350 init1: 304 opt: 317 Z-score: 263.2 bits: 57.1 E(85289): 6.4e-08
Smith-Waterman score: 327; 42.5% identity (58.8% similar) in 153 aa overlap (194-322:84-236)
170 180 190 200 210
pF1KB8 YGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRN---P------
: .. :: : ::: :.. :
NP_002 PSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATS
60 70 80 90 100 110
220 230 240 250
pF1KB8 --PKTGKVGEYGY------LGQPNA-------VRTNFTTKQLTELEKEFHFNKYLTRARR
: .. : : :: :.: .:: .:. :: :::::::::::: : ::
NP_002 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR
120 130 140 150 160 170
260 270 280 290 300 310
pF1KB8 VEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPC
::::: :.:.: :::.::::::::.:.. .. : . . :: : . .:. ..::
NP_002 VEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPG
180 190 200 210 220 230
320 330
pF1KB8 VPSPGSSTSDTLTTSH
::
NP_002 GPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPED
240 250 260 270 280 290
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:40:54 2016 done: Fri Nov 4 16:40:56 2016
Total Scan time: 8.850 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]