Result of FASTA (omim) for
pFN21AB8911
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8911, 250 aa
1>>>pF1KB8911 250 - 250 aa - 250 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5684+/-0.000342; mu= 7.0949+/- 0.022
mean_var=212.5662+/-44.577, 0's: 0 Z-trim(121.4): 197 B-trim: 32 in 1/55
Lambda= 0.087968
statistics sampled from 37642 (37876) to 37642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.444), width: 16
Scan time: 7.720
The best scores are: opt bits E(85289)
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 1718 229.8 3.6e-60
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 714 102.4 8.5e-22
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 592 86.9 4e-17
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 475 72.2 1.4e-12
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 432 66.7 6e-11
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 427 66.1 9.4e-11
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 416 64.8 2.8e-10
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 368 58.6 1.7e-08
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 346 55.8 1.1e-07
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 333 53.9 2.7e-07
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 321 52.5 9.4e-07
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 318 52.2 1.2e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 321 52.7 1.3e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 321 52.7 1.3e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 321 52.7 1.3e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 321 52.7 1.3e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 321 52.7 1.3e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 321 52.7 1.3e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 321 52.7 1.3e-06
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 313 51.4 1.7e-06
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 310 51.1 2.2e-06
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 310 51.1 2.2e-06
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 310 51.1 2.2e-06
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 309 51.0 2.8e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 306 50.5 2.9e-06
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 296 49.3 8.1e-06
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 294 49.0 8.8e-06
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 291 48.9 1.6e-05
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 284 47.7 2.1e-05
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 286 48.1 2.2e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 282 47.5 2.5e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 282 47.5 2.5e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 282 47.5 2.5e-05
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 275 46.2 2.8e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 282 47.6 2.9e-05
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 276 46.8 4.7e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 279 47.4 4.9e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 275 46.6 5e-05
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 276 46.8 5.1e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 276 47.0 6.4e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 276 47.0 6.4e-05
NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 271 46.2 7.3e-05
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 270 46.0 7.9e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 269 46.0 9.3e-05
>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa)
initn: 1718 init1: 1718 opt: 1718 Z-score: 1201.2 bits: 229.8 E(85289): 3.6e-60
Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
190 200 210 220 230 240
250
pF1KB8 KKMNKEQGKE
::::::::::
NP_076 KKMNKEQGKE
250
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 769 init1: 485 opt: 714 Z-score: 512.3 bits: 102.4 E(85289): 8.5e-22
Smith-Waterman score: 778; 51.9% identity (68.7% similar) in 262 aa overlap (1-247:1-254)
10 20 30 40 50
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKFP-SGQY-ASSRQPGHAEHL-EFPSCSFQPKAP
:: .: .:.:::::.:::..:: ..:: .: . :..: : . .:::::: ::
NP_008 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 VFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP----GQGQ
::..::::. ..: ::::: :: :..::.:::::: . . : : .
NP_008 VFSTSWAPVPSQSS----VVYHPY-GPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH
70 80 90 100 110
120 130 140 150 160
pF1KB8 AAVKAEPLLG-----APGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKE
:.: . : .::: .. :.: . : :. . : . ::. ::
NP_008 YALKPDAYPGRRADCGPGE--GRSYPDY-MYGSPGELRDRAPQTLPSPEADALAGSKHKE
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 RP---DQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLS
. : .:: :::.::::.::::::::::::::::::::::::::::::.::::.:::.
NP_008 EKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLT
180 190 200 210 220 230
230 240 250
pF1KB8 ERQVKIWFQNRRMKMKKMNKEQGKE
:::::::::::::::::::::.
NP_008 ERQVKIWFQNRRMKMKKMNKEKTDKEQS
240 250 260
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 704 init1: 485 opt: 592 Z-score: 428.4 bits: 86.9 E(85289): 4e-17
Smith-Waterman score: 761; 49.5% identity (69.5% similar) in 275 aa overlap (1-250:1-271)
10 20 30 40 50
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSR--QPGH-----AEHLEFPSCSFQ
:. .:.:..:::::.. . :: .. :.:: . :: . ::: .: ::::
NP_689 MATTGALGNYYVDSFLL--GADAAD-ELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQ
10 20 30 40 50
60 70 80 90 100
pF1KB8 PKAPVFGASWAPLSPHASGSLPS-VYH-----PYIQPQGVPPA----ESRYLRTWLEPAP
:: :::::: :. .....:. ::: ::..::. : : ..::.:.::::.:
NP_689 SKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQA-PVAAAAPDGRYMRSWLEPTP
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 RG---EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA-GREAVLSNQRPGYG---
. . :.. ..: ::: . :. : :: : : : ...:. :
NP_689 GALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFS
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 -DNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRR
.: :.. :: : .::.::::::::.:::::::::.::::::::::::::::::::
NP_689 ENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRR
180 190 200 210 220 230
220 230 240 250
pF1KB8 HEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
.::::::::.:::::::::::::::::.::...:.
NP_689 YEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
240 250 260 270
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 674 init1: 467 opt: 475 Z-score: 346.8 bits: 72.2 E(85289): 1.4e-12
Smith-Waterman score: 536; 39.9% identity (57.6% similar) in 278 aa overlap (54-247:70-347)
30 40 50 60 70 80
pF1KB8 PPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWA--PLSPHASGSLPSVYHPY
:.. ::.:::. : .: :.... ..::::
NP_055 PPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPY
40 50 60 70 80 90
90 100 110 120
pF1KB8 IQPQGVPPAES---RYLRTWLEPAPR-----------GEAAPGQGQAAVKAEPLLG----
. : . . : ::.:.:.:: : : ..::.: . . : :
NP_055 VPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYG
100 110 120 130 140 150
130 140
pF1KB8 -------APGELL--------------------------KQGT--PEYSLETSAGREAVL
::. .::. ::.: .. ..:.
NP_055 IKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAA
160 170 180 190 200 210
150 160 170
pF1KB8 SN--QRPGYG-----------------DNKI--CEGSEDKER---PDQ-----TNPSANW
.. :: : :. : : .:.... :.: .::.:::
NP_055 ATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANW
220 230 240 250 260 270
180 190 200 210 220 230
pF1KB8 LHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMK
.::::.::::::::::::::::::::::::::::::.::::.:::.::::::::::::::
NP_055 IHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMK
280 290 300 310 320 330
240 250
pF1KB8 MKKMNKEQGKE
::::.::.
NP_055 MKKMSKEKCPKGD
340 350
>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa)
initn: 478 init1: 401 opt: 432 Z-score: 317.5 bits: 66.7 E(85289): 6e-11
Smith-Waterman score: 436; 39.4% identity (64.2% similar) in 218 aa overlap (35-246:125-327)
10 20 30 40 50 60
pF1KB8 GTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQ-PKAPVFGASW
:.. :.. ..: :: . :..:: : .
NP_002 TQQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVPSY-QRLVPESCPVENPEVPVPG--Y
100 110 120 130 140 150
70 80 90 100 110 120
pF1KB8 APLSP-HASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLL
:: .:.:. . .:.: . :. ::: : : . : .. : .
NP_002 FRLSQTYATGKTQEYNN---SPEGSSTV-------MLQLNPRGAAKPQLSAAQLQMEKKM
160 170 180 190 200
130 140 150 160 170
pF1KB8 GAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKIC----EGSEDKERPDQTNPSAN
. : . : . : : .. : ..: .. .. . .:.::. . .:..:
NP_002 NEP--VSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSN
210 220 230 240 250
180 190 200 210 220 230
pF1KB8 WLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM
:: :.:.:::::::::.:::::::::::::::::.:: :... .::..::::::::::::
NP_002 WLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRM
260 270 280 290 300 310
240 250
pF1KB8 KMKKMNKEQGKE
:.:::..:
NP_002 KLKKMSRENRIRELTANLTFS
320 330 340
>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa)
initn: 429 init1: 404 opt: 427 Z-score: 314.0 bits: 66.1 E(85289): 9.4e-11
Smith-Waterman score: 451; 41.7% identity (65.4% similar) in 211 aa overlap (43-246:140-329)
20 30 40 50 60 70
pF1KB8 DSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASG
:: : : :. .: ..: .:: ::
NP_059 VCCMYSAEKRAKSGPEAALYSHPLPESCLGEH-EVPVPSYYRASPSYSA--LDKTPHCSG
110 120 130 140 150 160
80 90 100 110 120
pF1KB8 SLPSVYHPYIQPQGVPPA----ESRYL--RTWLEPAPRGEA-APGQGQAAVKAEPLLGAP
. . :. : .. : :: : .. . .:.... .:. .. .:.: :..:
NP_059 A-NDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNE--IKTEQSLAGP
170 180 190 200 210 220
130 140 150 160 170 180
pF1KB8 GELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSS
.:.: : . ..: ... : .:: : ::. : ..::: :.:.
NP_059 -----KGSPSESEK----ERAKAADSSPDTSDN------EAKEEIKAENTTGNWLTAKSG
230 240 250 260
190 200 210 220 230 240
pF1KB8 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK
:::::::::.:::::::::::::::::.:: :... .::..:::::::::::::.::::.
NP_059 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR
270 280 290 300 310 320
250
pF1KB8 EQGKE
:
NP_059 ENRIRELTSNFNFT
330 340
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 447 init1: 390 opt: 416 Z-score: 305.6 bits: 64.8 E(85289): 2.8e-10
Smith-Waterman score: 416; 47.8% identity (68.6% similar) in 159 aa overlap (100-246:244-397)
70 80 90 100 110 120
pF1KB8 ASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP-----GQGQAAVKAEPLLGA
.: :: : :...:: : . : .
NP_061 FRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSP
220 230 240 250 260 270
130 140 150 160 170
pF1KB8 PGELL-------KQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSA
: : .:: : .::..: :: :. .... .:. .. . .:
NP_061 PPPTLACGSGGGSQGDEEAHASSSAAEE--LS---PAPSESSKASPEKDSLGNSKGENAA
280 290 300 310 320
180 190 200 210 220 230
pF1KB8 NWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRR
::: :.:.:::::::::.:::::::::::::::::.:: :..: ..:..:::::::::::
NP_061 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR
330 340 350 360 370 380
240 250
pF1KB8 MKMKKMNKEQGKE
::.::::.:
NP_061 MKLKKMNRENRIRELTANFNFS
390 400 410
>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa)
initn: 369 init1: 312 opt: 368 Z-score: 273.6 bits: 58.6 E(85289): 1.7e-08
Smith-Waterman score: 388; 38.2% identity (59.3% similar) in 204 aa overlap (48-247:137-328)
20 30 40 50 60 70
pF1KB8 HESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPH--ASGSLP
:. :. :: .: : .: ::.
NP_067 YAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYS
110 120 130 140 150 160
80 90 100 110 120 130
pF1KB8 SVYHPYIQPQGVPP-AESRYLRTWLEPAPRGEAAPGQGQ-AAVKAEPLLGAPGELLKQGT
.: . : ::: :. . : : :: : . :: :..: :: : :.
NP_067 AVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGG---GGGS
170 180 190 200 210 220
140 150 160 170 180 190
pF1KB8 PEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYT
: ... : : . . : ::.. : :. :.. . . :::::::::
NP_067 P--CTKATPGSEPKGAAEGSG-GDGEGPPGEAGAEK------SSSAVAPQRSRKKRCPYT
230 240 250 260 270
200 210 220 230 240 250
pF1KB8 KYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
::: :::.::.::.:.....: ...:.:::..::::::::::::: ::.:...
NP_067 KYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTG
280 290 300 310 320 330
NP_067 NPLF
>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa)
initn: 370 init1: 300 opt: 346 Z-score: 259.0 bits: 55.8 E(85289): 1.1e-07
Smith-Waterman score: 357; 33.1% identity (61.3% similar) in 248 aa overlap (24-247:69-303)
10 20 30 40
pF1KB8 MSISGTLSSYYVDSIISHESEDAPPAKF-PSGQYA---SSRQPGHAEHLEFPS
: .:. : :. : :... : . :. ::
NP_005 SSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPS
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB8 CSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGV-PPAESRYLRTWLEPAPRGEAA
. : . :.. : : . : . .. : .. . .:: : : .....: .:.. :.
NP_005 AAGVP-GDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFET-AYGTPENLAS
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB8 ---PGQGQAAVKAEPL---LGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICE
::. ..: :. : .: . :.: : :.: : : .
NP_005 SDYPGD-KSAEKGPPAATATSAAAAAAATGAPATSSSDSGG----------GGGCRETAA
160 170 180 190 200
170 180 190 200
pF1KB8 GSEDKER---PDQTN-PSANWLHARS---------SRKKRCPYTKYQTLELEKEFLFNMY
..:.::: :.... : .. :... .::::::::::: :::.::.:..:
NP_005 AAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVY
210 220 230 240 250 260
210 220 230 240 250
pF1KB8 LTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
.....: ...:.:::..::::::::::::: ::.:...
NP_005 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
270 280 290 300 310
>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo (222 aa)
initn: 328 init1: 284 opt: 333 Z-score: 251.8 bits: 53.9 E(85289): 2.7e-07
Smith-Waterman score: 333; 37.0% identity (57.8% similar) in 211 aa overlap (48-250:17-220)
20 30 40 50 60 70
pF1KB8 HESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLP-S
:. ..: . .:: . : . :.: :
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLS
10 20 30 40
80 90 100 110 120 130
pF1KB8 VYHPYIQP----QGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQG
. : : .:: : . . .:: . ::::.. . .: :: :: . .:
NP_061 ITFPPPAPSNSLHGVDMAANPRAHP-DRPACSAAAAPGHAPGRDEAAPL--NPG-MYSQK
50 60 70 80 90 100
140 150 160 170 180
pF1KB8 TPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHAR---SSRKKR
. . .:: : . ..... :. : . : : : . :: .....:
NP_061 AARPALEERAKSSGEIKEEQAQTGQPA---GLSQPPAPPQIYPWMTKLHMSHETDGKRSR
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 CPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGK
::.:::::::::: :: :::: :: :.: : :.:::.:::::::::: :: .: ..:
NP_061 TSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSK
160 170 180 190 200 210
250
pF1KB8 E
:
NP_061 EAL
220
250 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:27:55 2016 done: Fri Nov 4 16:27:56 2016
Total Scan time: 7.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]