(Circular) (Six-base) MAPSORT of: pFN21AB8909.seq Check: 3415 from: 1 to: 5437 pFN21AB8909 5437 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3247 278 Size: 53 83 186 936 1711 2468 Fragments arranged by size: 2468 1711 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2780 1937 Size: 843 4594 Acc65I G'GTAC_C Cuts at: 2758 2758 Size: 5437 AclI AA'CG_TT Cuts at: 1563 3564 3937 1563 Size: 2001 373 3063 Fragments arranged by size: 3063 2001 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3500 4884 5152 1632 Size: 1868 1384 268 1917 Fragments arranged by size: 1917 1868 1384 268 AfeI AGC'GCT Cuts at: 2636 2636 Size: 5437 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5240 AflIII A'CryG_T Cuts at: 1203 4336 5313 1203 Size: 3133 977 1327 Fragments arranged by size: 3133 1327 977 AgeI A'CCGG_T Cuts at: 4268 4268 Size: 5437 AhdI GACnn_n'nnGTC Cuts at: 4166 4166 Size: 5437 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5437 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5437 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2594 2626 2594 Size: 32 5405 AlwNI CAG_nnn'CTG Cuts at: 2047 2451 3180 4752 2047 Size: 404 729 1572 2732 Fragments arranged by size: 2732 1572 729 404 ApaLI G'TGCA_C Cuts at: 3494 4650 3494 Size: 1156 4281 ApoI r'AATT_y Cuts at: 1493 2746 2972 3124 5233 1493 Size: 1253 226 152 2109 1697 Fragments arranged by size: 2109 1697 1253 226 152 AseI AT'TA_AT Cuts at: 160 1032 3991 160 Size: 872 2959 1606 Fragments arranged by size: 2959 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5437 AvaI C'yCGr_G Cuts at: 1870 1943 2152 2762 1870 Size: 73 209 610 4545 Fragments arranged by size: 4545 610 209 73 BamHI G'GATC_C Cuts at: 2285 2350 2767 3134 2285 Size: 65 417 367 4588 Fragments arranged by size: 4588 417 367 65 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2074 2758 4213 618 Size: 325 217 627 287 684 1455 1842 Fragments arranged by size: 1842 1455 684 627 325 287 217 BanII G_rGCy'C Cuts at: 1391 2756 1391 Size: 1365 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4466 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3628 3662 1903 Size: 34 1691 34 3678 Fragments arranged by size: 3678 1691 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3329 4539 3329 Size: 1210 4227 BclI T'GATC_A Cuts at: 1548 2700 1548 Size: 1152 4285 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4048 136 Size: 107 122 71 631 605 2376 1525 Fragments arranged by size: 2376 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5432 5432 Size: 5437 BlpI GC'TnA_GC Cuts at: 2854 2854 Size: 5437 Bme1580I G_kGCm'C Cuts at: 1790 2441 3498 4654 1790 Size: 651 1057 1156 2573 Fragments arranged by size: 2573 1156 1057 651 BmgBI CAC'GTC Cuts at: 1318 2299 1318 Size: 981 4456 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2035 2607 3168 Size: 416 53 83 399 24 618 572 561 Cuts at: 3168 4126 442 Size: 958 1753 Fragments arranged by size: 1753 958 618 572 561 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5437 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2412 4097 1239 Size: 1173 1685 2579 Fragments arranged by size: 2579 1685 1173 Bpu10I CC'TnA_GC Cuts at: 2121 2121 Size: 5437 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3562 4427 4725 3562 Size: 865 298 4274 Fragments arranged by size: 4274 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4100 882 Size: 617 2601 2219 Fragments arranged by size: 2601 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2532 3228 493 Size: 711 1328 696 2702 Fragments arranged by size: 2702 1328 711 696 BsaBI GATnn'nnATC Cuts at: 5431 5431 Size: 5437 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2100 3244 3626 4261 Size: 53 83 186 936 567 1144 382 635 Cuts at: 4261 275 Size: 1451 Fragments arranged by size: 1451 1144 936 635 567 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2095 2586 3870 4268 4542 4689 5100 2095 Size: 491 1284 398 274 147 411 2432 Fragments arranged by size: 2432 1284 491 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5212 Fragments arranged by size: 5212 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2354 2372 2659 1186 Size: 1168 18 287 3964 Fragments arranged by size: 3964 1168 287 18 BseYI C'CCAG_C Cuts at: 2366 2693 4640 5136 2366 Size: 327 1947 496 2667 Fragments arranged by size: 2667 1947 496 327 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2161 2269 2512 1163 Size: 573 425 108 243 4088 Fragments arranged by size: 4088 573 425 243 108 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2016 2711 2887 3648 4676 1540 Size: 275 186 15 695 176 761 1028 2301 Fragments arranged by size: 2301 1028 761 695 275 186 176 15 BsiHKAI G_wGCw'C Cuts at: 2145 3498 3583 4654 2145 Size: 1353 85 1071 2928 Fragments arranged by size: 2928 1353 1071 85 BsmI GAATG_Cn' Cuts at: 2948 3041 2948 Size: 93 5344 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2145 2441 2756 3498 3583 4654 1391 Size: 399 355 296 315 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 355 315 296 85 BspEI T'CCGG_A Cuts at: 2095 5100 2095 Size: 3005 2432 BspHI T'CATG_A Cuts at: 2640 3326 5056 2640 Size: 686 1730 3021 Fragments arranged by size: 3021 1730 686 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2792 844 Size: 1948 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2107 2374 2562 3324 1394 Size: 429 284 267 188 762 3507 Fragments arranged by size: 3507 762 429 284 267 188 BsrDI GCAATG_nn' Cuts at: 65 1248 3932 4106 65 Size: 1183 2684 174 1396 Fragments arranged by size: 2684 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4081 4268 1700 Size: 110 2271 187 2869 Fragments arranged by size: 2869 2271 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5437 BssHII G'CGCG_C Cuts at: 1925 2361 1925 Size: 436 5001 BssSI C'ACGA_G Cuts at: 3497 4509 3497 Size: 1012 4425 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5437 BstBI TT'CG_AA Cuts at: 2060 4241 2060 Size: 2181 3256 BstEII G'GTnAC_C Cuts at: 1184 2131 2147 2185 1184 Size: 947 16 38 4436 Fragments arranged by size: 4436 947 38 16 BstXI CCAn_nnnn'nTGG Cuts at: 2734 2734 Size: 5437 BstYI r'GATC_y Cuts at: 1972 2285 2350 2767 3134 3519 3536 4988 5074 Size: 313 65 417 367 385 17 1452 86 Cuts at: 5074 5086 5432 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 417 385 367 346 313 86 65 17 12 BtgI C'CryG_G Cuts at: 513 1065 2010 513 Size: 552 945 3940 Fragments arranged by size: 3940 945 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2176 487 Size: 683 56 950 3748 Fragments arranged by size: 3748 950 683 56 BtsI GCAGTG_nn' Cuts at: 2953 3747 3767 2953 Size: 794 20 4623 Fragments arranged by size: 4623 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5437 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5402 DraI TTT'AAA Cuts at: 2741 2741 Size: 5437 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4444 809 Size: 507 3128 1802 Fragments arranged by size: 3128 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2013 2534 2724 Size: 54 1425 50 275 18 183 521 190 Cuts at: 2724 2884 3773 5402 8 Size: 160 889 1629 43 Fragments arranged by size: 1629 1425 889 521 275 190 183 160 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2013 2884 1537 Size: 275 201 871 4090 Fragments arranged by size: 4090 871 275 201 EarI CTCTTCn'nnn_ Cuts at: 1353 3367 1353 Size: 2014 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4024 4398 4544 387 Size: 1064 138 2435 374 146 1280 Fragments arranged by size: 2435 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2412 3500 4097 4884 5152 1239 Size: 393 780 1088 597 787 268 1524 Fragments arranged by size: 1524 1088 787 780 597 393 268 EcoRI G'AATT_C Cuts at: 2746 3124 2746 Size: 378 5059 FspI TGC'GCA Cuts at: 3943 3943 Size: 5437 HaeII r_GCGC'y Cuts at: 1678 2638 2723 4584 1678 Size: 960 85 1861 2531 Fragments arranged by size: 2531 1861 960 85 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2270 2302 2335 2367 4078 Size: 32 135 32 698 32 33 32 1711 Cuts at: 4078 4110 4152 4184 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1711 698 135 42 33 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2781 3027 669 Size: 988 281 843 246 3079 Fragments arranged by size: 3079 988 843 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5437 HpaI GTT'AAC Cuts at: 3027 3027 Size: 5437 KpnI G_GTAC'C Cuts at: 2762 2762 Size: 5437 MfeI C'AATT_G Cuts at: 3036 3036 Size: 5437 MluI A'CGCG_T Cuts at: 5313 5313 Size: 5437 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2187 2313 4551 4735 1305 Size: 882 126 2238 184 2007 Fragments arranged by size: 2238 2007 882 184 126 MscI TGG'CCA Cuts at: 10 64 1489 1832 2536 2726 10 Size: 54 1425 343 704 190 2721 Fragments arranged by size: 2721 1425 704 343 190 54 MslI CAynn'nnrTG Cuts at: 518 1166 2508 3395 3754 3913 518 Size: 648 1342 887 359 159 2042 Fragments arranged by size: 2042 1342 887 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2012 2616 2623 2853 3530 4678 4923 1606 Size: 406 604 7 230 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 604 406 245 230 7 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4885 NdeI CA'TA_TG Cuts at: 387 387 Size: 5437 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5437 NotI GC'GGCC_GC Cuts at: 2013 2884 2013 Size: 871 4566 NspI r_CATG'y Cuts at: 1132 1229 2795 4340 1132 Size: 97 1566 1545 2229 Fragments arranged by size: 2229 1566 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5437 PciI A'CATG_T Cuts at: 4336 4336 Size: 5437 PflMI CCAn_nnn'nTGG Cuts at: 1108 2047 1108 Size: 939 4498 PfoI T'CCnGG_A Cuts at: 2389 2389 Size: 5437 PmeI GTTT'AAAC Cuts at: 2741 2741 Size: 5437 PmlI CAC'GTG Cuts at: 2532 2532 Size: 5437 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3506 3538 5019 5051 3506 Size: 32 1481 32 3892 Fragments arranged by size: 3892 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5437 PsiI TTA'TAA Cuts at: 3007 3007 Size: 5437 PstI C_TGCA'G Cuts at: 830 2789 830 Size: 1959 3478 PvuI CG_AT'CG Cuts at: 2001 2711 2001 Size: 710 4727 SacII CC_GC'GG Cuts at: 2013 2013 Size: 5437 SalI G'TCGA_C Cuts at: 1936 2779 1936 Size: 843 4594 SbfI CC_TGCA'GG Cuts at: 2789 2789 Size: 5437 ScaI AGT'ACT Cuts at: 3685 5397 3685 Size: 1712 3725 SfcI C'TryA_G Cuts at: 826 1045 2443 2785 3920 4601 4792 826 Size: 219 1398 342 1135 681 191 1471 Fragments arranged by size: 1471 1398 1135 681 342 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5437 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5437 SmaI CCC'GGG Cuts at: 1872 2154 2764 1872 Size: 282 610 4545 Fragments arranged by size: 4545 610 282 SmlI C'TyrA_G Cuts at: 820 1017 1943 3541 4442 4704 820 Size: 197 926 1598 901 262 1553 Fragments arranged by size: 1598 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3228 493 Size: 2735 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5437 SphI G_CATG'C Cuts at: 1132 2795 1132 Size: 1663 3774 SspI AAT'ATT Cuts at: 5 52 3361 5 Size: 47 3309 2081 Fragments arranged by size: 3309 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5437 StyI C'CwwG_G Cuts at: 513 1065 2136 2876 513 Size: 552 1071 740 3074 Fragments arranged by size: 3074 1071 740 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3464 3481 3634 3819 4264 325 Size: 1255 1884 17 153 185 445 1498 Fragments arranged by size: 1884 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3683 5395 96 Size: 274 80 33 51 1443 1706 1712 138 Fragments arranged by size: 1712 1706 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5397 5429 5397 Size: 32 5405 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5437 XbaI T'CTAG_A Cuts at: 2773 2773 Size: 5437 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2203 2203 Size: 5437 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5437 XmaI C'CCGG_G Cuts at: 1870 2152 2762 1870 Size: 282 610 4545 Fragments arranged by size: 4545 610 282 XmnI GAAnn'nnTTC Cuts at: 2636 3566 2636 Size: 930 4507 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3245 276 Size: 53 83 186 936 1711 2468 Fragments arranged by size: 2468 1711 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PstI PvuI SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SanDI SapI SexAI SfiI SfoI SrfI SwaI