Result of FASTA (omim) for
pFN21AB8895
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8895, 223 aa
1>>>pF1KB8895 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9258+/-0.000373; mu= 10.4345+/- 0.023
mean_var=69.8173+/-13.328, 0's: 0 Z-trim(113.4): 102 B-trim: 23 in 1/54
Lambda= 0.153494
statistics sampled from 22587 (22692) to 22587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.266), width: 16
Scan time: 6.000
The best scores are: opt bits E(85289)
NP_036460 (OMIM: 602634) dnaJ homolog subfamily B ( 223) 1507 342.7 3e-94
NP_001304028 (OMIM: 611327) dnaJ homolog subfamily ( 337) 343 84.9 1.7e-16
NP_008965 (OMIM: 611327) dnaJ homolog subfamily B ( 337) 343 84.9 1.7e-16
NP_005485 (OMIM: 603511,611332) dnaJ homolog subfa ( 241) 340 84.2 2e-16
XP_006715886 (OMIM: 603511,611332) PREDICTED: dnaJ ( 257) 340 84.2 2.1e-16
NP_490647 (OMIM: 603511,611332) dnaJ homolog subfa ( 326) 340 84.3 2.6e-16
XP_005249572 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334) 340 84.3 2.7e-16
XP_011514006 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334) 340 84.3 2.7e-16
XP_005249573 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334) 340 84.3 2.7e-16
XP_006716814 (OMIM: 611328) PREDICTED: dnaJ homolo ( 348) 337 83.6 4.4e-16
XP_005251485 (OMIM: 611328) PREDICTED: dnaJ homolo ( 348) 337 83.6 4.4e-16
NP_036398 (OMIM: 611328) dnaJ homolog subfamily B ( 348) 337 83.6 4.4e-16
NP_001128477 (OMIM: 611328) dnaJ homolog subfamily ( 420) 337 83.6 5.3e-16
XP_011516144 (OMIM: 611328) PREDICTED: dnaJ homolo ( 420) 337 83.6 5.3e-16
NP_001128476 (OMIM: 611328) dnaJ homolog subfamily ( 462) 337 83.7 5.7e-16
NP_057390 (OMIM: 611341) dnaJ homolog subfamily B ( 358) 320 79.9 6.2e-15
XP_006713582 (OMIM: 611337) PREDICTED: dnaJ homolo ( 232) 312 78.0 1.4e-14
NP_699161 (OMIM: 611337) dnaJ homolog subfamily B ( 232) 312 78.0 1.4e-14
XP_016867122 (OMIM: 603511,611332) PREDICTED: dnaJ ( 211) 307 76.9 2.8e-14
NP_006136 (OMIM: 604572) dnaJ homolog subfamily B ( 340) 308 77.2 3.7e-14
XP_005269989 (OMIM: 608376) PREDICTED: dnaJ homolo ( 409) 304 76.3 8.1e-14
NP_001002762 (OMIM: 608376) dnaJ homolog subfamily ( 409) 304 76.3 8.1e-14
NP_060096 (OMIM: 608376) dnaJ homolog subfamily B ( 409) 304 76.3 8.1e-14
XP_005269988 (OMIM: 608376) PREDICTED: dnaJ homolo ( 411) 304 76.3 8.2e-14
NP_001128582 (OMIM: 608382) dnaJ homolog subfamily ( 453) 304 76.4 8.9e-14
NP_005138 (OMIM: 608382) dnaJ homolog subfamily A ( 480) 304 76.4 9.4e-14
NP_001034639 (OMIM: 604139,614881,617017) dnaJ hom ( 277) 297 74.7 1.7e-13
NP_006727 (OMIM: 604139,614881,617017) dnaJ homolo ( 324) 297 74.8 1.9e-13
NP_001304032 (OMIM: 611327) dnaJ homolog subfamily ( 77) 282 71.2 5.2e-13
NP_005871 (OMIM: 611322) dnaJ homolog subfamily A ( 412) 286 72.4 1.3e-12
NP_660157 (OMIM: 611336) dnaJ homolog subfamily B ( 309) 278 70.5 3.4e-12
NP_001530 (OMIM: 602837) dnaJ homolog subfamily A ( 397) 270 68.8 1.5e-11
NP_001258510 (OMIM: 607987) dnaJ homolog subfamily ( 747) 266 68.0 4.8e-11
NP_061854 (OMIM: 607987) dnaJ homolog subfamily C ( 793) 266 68.0 5.1e-11
NP_705842 (OMIM: 610263,617091) dnaJ homolog subfa ( 316) 233 60.6 3.5e-09
XP_016876164 (OMIM: 601184,616192) PREDICTED: dnaJ ( 383) 225 58.8 1.4e-08
XP_016876163 (OMIM: 601184,616192) PREDICTED: dnaJ ( 421) 225 58.8 1.5e-08
XP_011519407 (OMIM: 601184,616192) PREDICTED: dnaJ ( 450) 225 58.9 1.6e-08
NP_079495 (OMIM: 611203) dnaJ homolog subfamily C ( 198) 220 57.6 1.7e-08
XP_011527351 (OMIM: 611203) PREDICTED: dnaJ homolo ( 198) 220 57.6 1.7e-08
XP_011527350 (OMIM: 611203) PREDICTED: dnaJ homolo ( 198) 220 57.6 1.7e-08
NP_006251 (OMIM: 601184,616192) dnaJ homolog subfa ( 504) 225 58.9 1.8e-08
XP_011519406 (OMIM: 601184,616192) PREDICTED: dnaJ ( 533) 225 58.9 1.9e-08
XP_011515922 (OMIM: 613945) PREDICTED: dnaJ homolo ( 180) 209 55.2 8.3e-08
NP_149096 (OMIM: 613945) dnaJ homolog subfamily C ( 199) 209 55.2 9.1e-08
XP_011515920 (OMIM: 613945) PREDICTED: dnaJ homolo ( 199) 209 55.2 9.1e-08
XP_005274041 (OMIM: 610263,617091) PREDICTED: dnaJ ( 262) 210 55.5 1e-07
XP_016872025 (OMIM: 611207) PREDICTED: dnaJ homolo ( 361) 211 55.7 1.2e-07
XP_011517916 (OMIM: 611207) PREDICTED: dnaJ homolo ( 394) 211 55.7 1.2e-07
NP_071760 (OMIM: 611207) dnaJ homolog subfamily C ( 554) 211 55.8 1.7e-07
>>NP_036460 (OMIM: 602634) dnaJ homolog subfamily B memb (223 aa)
initn: 1507 init1: 1507 opt: 1507 Z-score: 1813.1 bits: 342.7 E(85289): 3e-94
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNFDDLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNFDDLFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DFGFFGQNQNTGSKKRFENHFQTRQDGGSSRQRHHFQEFSFGGGLFDDMFEDMEKMFSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DFGFFGQNQNTGSKKRFENHFQTRQDGGSSRQRHHFQEFSFGGGLFDDMFEDMEKMFSFS
130 140 150 160 170 180
190 200 210 220
pF1KB8 GFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ
:::::::::::::::::::::::::::::::::::::::::::
NP_036 GFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ
190 200 210 220
>>NP_001304028 (OMIM: 611327) dnaJ homolog subfamily B m (337 aa)
initn: 324 init1: 296 opt: 343 Z-score: 417.1 bits: 84.9 E(85289): 1.7e-16
Smith-Waterman score: 343; 43.4% identity (69.9% similar) in 143 aa overlap (25-161:3-137)
10 20 30 40 50 60
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS
:.:: :::. :.::...::::..: :.:.:::::::
NP_001 MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKS
10 20 30
70 80 90 100 110
pF1KB8 PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQR-GSGSSFEQSFNFNFDDLF
:.:: ::.:.:::::.::: ..:. :: .:. .. .: : :.:..:. .:. . :
NP_001 PQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATF
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KDFGFFGQNQNTGSKKRFENHFQTRQDGGSSRQRHH-----FQEFSFGGGLFDDMFEDME
.::: ::. :: : :. :: . .. . :. :.:
NP_001 A--AFFG-----GSNP-FEIFFGRRMGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVG
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 KMFSFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ
NP_001 PSRLKQDPPVIHELRVSLEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKE
160 170 180 190 200 210
>>NP_008965 (OMIM: 611327) dnaJ homolog subfamily B memb (337 aa)
initn: 324 init1: 296 opt: 343 Z-score: 417.1 bits: 84.9 E(85289): 1.7e-16
Smith-Waterman score: 343; 43.4% identity (69.9% similar) in 143 aa overlap (25-161:3-137)
10 20 30 40 50 60
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS
:.:: :::. :.::...::::..: :.:.:::::::
NP_008 MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKS
10 20 30
70 80 90 100 110
pF1KB8 PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQR-GSGSSFEQSFNFNFDDLF
:.:: ::.:.:::::.::: ..:. :: .:. .. .: : :.:..:. .:. . :
NP_008 PQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATF
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KDFGFFGQNQNTGSKKRFENHFQTRQDGGSSRQRHH-----FQEFSFGGGLFDDMFEDME
.::: ::. :: : :. :: . .. . :. :.:
NP_008 A--AFFG-----GSNP-FEIFFGRRMGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVG
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 KMFSFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ
NP_008 PSRLKQDPPVIHELRVSLEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKE
160 170 180 190 200 210
>>NP_005485 (OMIM: 603511,611332) dnaJ homolog subfamily (241 aa)
initn: 180 init1: 150 opt: 340 Z-score: 415.8 bits: 84.2 E(85289): 2e-16
Smith-Waterman score: 344; 36.8% identity (65.7% similar) in 204 aa overlap (27-210:4-202)
10 20 30 40 50
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKN--
::..::: . :: ..::::..:::.:.:::::
NP_005 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPE
10 20 30
60 70 80 90 100 110
pF1KB8 KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNF---
.. .:: ::...:::::.::::..: :: :. ....: : .:: :.. :.:.:
NP_005 NKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGG---GGSHFDSPFEFGFTFR
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --DDLFKDFGFFGQNQNTGS--KKRFENHFQTRQDGGSSRQR---HHFQEFS----FGGG
::.:..: : :.. . . . ::. : .:. .::.: :. :: ::.:
NP_005 NPDDVFREF-FGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSG
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 L--FDDMFEDMEKMF--SFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDC
. :: : .. .. ....:.::. : :.. : . :. :.
NP_005 FSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGN-FKSISTSTKMVNGRKITTKRIVENG
160 170 180 190 200 210
pF1KB8 SGQ
NP_005 QERVEVEEDGQLKSLTINGKEQLLRLDNK
220 230 240
>>XP_006715886 (OMIM: 603511,611332) PREDICTED: dnaJ hom (257 aa)
initn: 180 init1: 150 opt: 340 Z-score: 415.4 bits: 84.2 E(85289): 2.1e-16
Smith-Waterman score: 344; 36.8% identity (65.7% similar) in 204 aa overlap (27-210:4-202)
10 20 30 40 50
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKN--
::..::: . :: ..::::..:::.:.:::::
XP_006 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPE
10 20 30
60 70 80 90 100 110
pF1KB8 KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNF---
.. .:: ::...:::::.::::..: :: :. ....: : .:: :.. :.:.:
XP_006 NKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGG---GGSHFDSPFEFGFTFR
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --DDLFKDFGFFGQNQNTGS--KKRFENHFQTRQDGGSSRQR---HHFQEFS----FGGG
::.:..: : :.. . . . ::. : .:. .::.: :. :: ::.:
XP_006 NPDDVFREF-FGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSG
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 L--FDDMFEDMEKMF--SFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDC
. :: : .. .. ....:.::. : :.. : . :. :.
XP_006 FSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGN-FKSISTSTKMVNGRKITTKRIVENG
160 170 180 190 200 210
pF1KB8 SGQ
XP_006 QERVEVEEDGQLKSLTINGLKEGGKRKKQKQREESKKKKSTKGNH
220 230 240 250
>>NP_490647 (OMIM: 603511,611332) dnaJ homolog subfamily (326 aa)
initn: 180 init1: 150 opt: 340 Z-score: 413.7 bits: 84.3 E(85289): 2.6e-16
Smith-Waterman score: 344; 36.8% identity (65.7% similar) in 204 aa overlap (27-210:4-202)
10 20 30 40 50
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKN--
::..::: . :: ..::::..:::.:.:::::
NP_490 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPE
10 20 30
60 70 80 90 100 110
pF1KB8 KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNF---
.. .:: ::...:::::.::::..: :: :. ....: : .:: :.. :.:.:
NP_490 NKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGG---GGSHFDSPFEFGFTFR
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --DDLFKDFGFFGQNQNTGS--KKRFENHFQTRQDGGSSRQR---HHFQEFS----FGGG
::.:..: : :.. . . . ::. : .:. .::.: :. :: ::.:
NP_490 NPDDVFREF-FGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSG
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 L--FDDMFEDMEKMF--SFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDC
. :: : .. .. ....:.::. : :.. : . :. :.
NP_490 FSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGN-FKSISTSTKMVNGRKITTKRIVENG
160 170 180 190 200 210
pF1KB8 SGQ
NP_490 QERVEVEEDGQLKSLTINGVADDDALAEERMRRGQNALPAQPAGLRPPKPPRPASLLRHA
220 230 240 250 260 270
>>XP_005249572 (OMIM: 603511,611332) PREDICTED: dnaJ hom (334 aa)
initn: 180 init1: 150 opt: 340 Z-score: 413.5 bits: 84.3 E(85289): 2.7e-16
Smith-Waterman score: 344; 36.8% identity (65.7% similar) in 204 aa overlap (27-210:4-202)
10 20 30 40 50
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKN--
::..::: . :: ..::::..:::.:.:::::
XP_005 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPE
10 20 30
60 70 80 90 100 110
pF1KB8 KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNF---
.. .:: ::...:::::.::::..: :: :. ....: : .:: :.. :.:.:
XP_005 NKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGG---GGSHFDSPFEFGFTFR
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --DDLFKDFGFFGQNQNTGS--KKRFENHFQTRQDGGSSRQR---HHFQEFS----FGGG
::.:..: : :.. . . . ::. : .:. .::.: :. :: ::.:
XP_005 NPDDVFREF-FGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSG
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 L--FDDMFEDMEKMF--SFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDC
. :: : .. .. ....:.::. : :.. : . :. :.
XP_005 FSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGN-FKSISTSTKMVNGRKITTKRIVENG
160 170 180 190 200 210
pF1KB8 SGQ
XP_005 QERVEVEEDGQLKSLTINGVADDDALAEERMRRGQNALPAQPAGLRPPKPPRPASLLRHA
220 230 240 250 260 270
>>XP_011514006 (OMIM: 603511,611332) PREDICTED: dnaJ hom (334 aa)
initn: 180 init1: 150 opt: 340 Z-score: 413.5 bits: 84.3 E(85289): 2.7e-16
Smith-Waterman score: 344; 36.8% identity (65.7% similar) in 204 aa overlap (27-210:4-202)
10 20 30 40 50
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKN--
::..::: . :: ..::::..:::.:.:::::
XP_011 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPE
10 20 30
60 70 80 90 100 110
pF1KB8 KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNF---
.. .:: ::...:::::.::::..: :: :. ....: : .:: :.. :.:.:
XP_011 NKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGG---GGSHFDSPFEFGFTFR
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --DDLFKDFGFFGQNQNTGS--KKRFENHFQTRQDGGSSRQR---HHFQEFS----FGGG
::.:..: : :.. . . . ::. : .:. .::.: :. :: ::.:
XP_011 NPDDVFREF-FGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSG
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 L--FDDMFEDMEKMF--SFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDC
. :: : .. .. ....:.::. : :.. : . :. :.
XP_011 FSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGN-FKSISTSTKMVNGRKITTKRIVENG
160 170 180 190 200 210
pF1KB8 SGQ
XP_011 QERVEVEEDGQLKSLTINGVADDDALAEERMRRGQNALPAQPAGLRPPKPPRPASLLRHA
220 230 240 250 260 270
>>XP_005249573 (OMIM: 603511,611332) PREDICTED: dnaJ hom (334 aa)
initn: 180 init1: 150 opt: 340 Z-score: 413.5 bits: 84.3 E(85289): 2.7e-16
Smith-Waterman score: 344; 36.8% identity (65.7% similar) in 204 aa overlap (27-210:4-202)
10 20 30 40 50
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKN--
::..::: . :: ..::::..:::.:.:::::
XP_005 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPE
10 20 30
60 70 80 90 100 110
pF1KB8 KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNF---
.. .:: ::...:::::.::::..: :: :. ....: : .:: :.. :.:.:
XP_005 NKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGG---GGSHFDSPFEFGFTFR
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --DDLFKDFGFFGQNQNTGS--KKRFENHFQTRQDGGSSRQR---HHFQEFS----FGGG
::.:..: : :.. . . . ::. : .:. .::.: :. :: ::.:
XP_005 NPDDVFREF-FGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSG
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 L--FDDMFEDMEKMF--SFSGFDSTNQHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDC
. :: : .. .. ....:.::. : :.. : . :. :.
XP_005 FSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGN-FKSISTSTKMVNGRKITTKRIVENG
160 170 180 190 200 210
pF1KB8 SGQ
XP_005 QERVEVEEDGQLKSLTINGVADDDALAEERMRRGQNALPAQPAGLRPPKPPRPASLLRHA
220 230 240 250 260 270
>>XP_006716814 (OMIM: 611328) PREDICTED: dnaJ homolog su (348 aa)
initn: 370 init1: 308 opt: 337 Z-score: 409.7 bits: 83.6 E(85289): 4.4e-16
Smith-Waterman score: 353; 37.7% identity (63.3% similar) in 199 aa overlap (25-212:3-198)
10 20 30 40 50 60
pF1KB8 MATPQSIFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS
:.:: :::.:..:.: .::::..:.:.::::::::
XP_006 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE
10 20 30
70 80 90 100 110
pF1KB8 PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGS-SFEQSFNFNFDDLF
:.:: ::.::::::..::: ..: :: :. .. .: : :..: ::. .:. . :
XP_006 PNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATF
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KDFGFFGQNQ-----NTGSKKRFENHFQTRQDGGSSRQRHHFQEFS-FG-GGLFDDMFED
.: : :.: .. . : . :. .: .... : :. :: .:: .
XP_006 ASF-FGGSNPFDIFFASSRSTRPFSGFDP-DDMDVDEDEDPFGAFGRFGFNGLSRGPRRA
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 MEKMFSFSGF-DSTNQHT--VQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ
: .. : : :. :. .:::.:. . .:.:: :
XP_006 PEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMK-ITRRRLNPDGRTVRTEDKILHIVI
160 170 180 190 200 210
XP_006 KRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCG
220 230 240 250 260 270
223 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:24:07 2016 done: Fri Nov 4 16:24:08 2016
Total Scan time: 6.000 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]