(Circular) (Six-base) MAPSORT of: pFN21AB8880.seq Check: 1468 from: 1 to: 5230 pFN21AB8880 5230 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3040 278 Size: 53 83 186 936 1504 2468 Fragments arranged by size: 2468 1504 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2196 2573 1937 Size: 259 377 4594 Fragments arranged by size: 4594 377 259 Acc65I G'GTAC_C Cuts at: 2551 2551 Size: 5230 AclI AA'CG_TT Cuts at: 1563 3357 3730 1563 Size: 1794 373 3063 Fragments arranged by size: 3063 1794 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2180 2537 3293 4677 4945 1632 Size: 548 357 756 1384 268 1917 Fragments arranged by size: 1917 1384 756 548 357 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5033 AflIII A'CryG_T Cuts at: 1203 4129 5106 1203 Size: 2926 977 1327 Fragments arranged by size: 2926 1327 977 AgeI A'CCGG_T Cuts at: 4061 4061 Size: 5230 AhdI GACnn_n'nnGTC Cuts at: 3959 3959 Size: 5230 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5230 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5230 AlwNI CAG_nnn'CTG Cuts at: 2973 4545 2973 Size: 1572 3658 ApaLI G'TGCA_C Cuts at: 3287 4443 3287 Size: 1156 4074 ApoI r'AATT_y Cuts at: 1493 2018 2539 2765 2917 5026 1493 Size: 525 521 226 152 2109 1697 Fragments arranged by size: 2109 1697 525 521 226 152 AseI AT'TA_AT Cuts at: 160 1032 3784 160 Size: 872 2752 1606 Fragments arranged by size: 2752 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5230 AvaI C'yCGr_G Cuts at: 1870 1943 2555 1870 Size: 73 612 4545 Fragments arranged by size: 4545 612 73 BamHI G'GATC_C Cuts at: 2560 2927 2560 Size: 367 4863 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2551 4006 618 Size: 325 217 627 764 1455 1842 Fragments arranged by size: 1842 1455 764 627 325 217 BanII G_rGCy'C Cuts at: 1391 2549 1391 Size: 1158 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2250 928 Size: 971 351 3908 Fragments arranged by size: 3908 971 351 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3421 3455 1903 Size: 34 1484 34 3678 Fragments arranged by size: 3678 1484 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2335 3122 4332 2335 Size: 787 1210 3233 Fragments arranged by size: 3233 1210 787 BclI T'GATC_A Cuts at: 1548 1548 Size: 5230 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3841 136 Size: 107 122 71 631 605 2169 1525 Fragments arranged by size: 2169 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2493 5225 2493 Size: 2732 2498 BlpI GC'TnA_GC Cuts at: 2647 2647 Size: 5230 Bme1580I G_kGCm'C Cuts at: 1790 3291 4447 1790 Size: 1501 1156 2573 Fragments arranged by size: 2573 1501 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5230 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2269 2961 3919 Size: 416 53 83 399 24 852 692 958 Cuts at: 3919 442 Size: 1753 Fragments arranged by size: 1753 958 852 692 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5230 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3890 1239 Size: 2651 2579 Bpu10I CC'TnA_GC Cuts at: 2043 2043 Size: 5230 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3355 4220 4518 3355 Size: 865 298 4067 Fragments arranged by size: 4067 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3893 882 Size: 617 2394 2219 Fragments arranged by size: 2394 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3021 493 Size: 711 1817 2702 Fragments arranged by size: 2702 1817 711 BsaBI GATnn'nnATC Cuts at: 5224 5224 Size: 5230 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3037 3419 4054 275 Size: 53 83 186 936 1504 382 635 1451 Fragments arranged by size: 1504 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3663 4061 4335 4482 4893 3663 Size: 398 274 147 411 4000 Fragments arranged by size: 4000 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5005 Fragments arranged by size: 5005 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5230 BseYI C'CCAG_C Cuts at: 2421 4433 4929 2421 Size: 2012 496 2722 Fragments arranged by size: 2722 2012 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4657 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2680 3441 4469 1540 Size: 275 186 679 761 1028 2301 Fragments arranged by size: 2301 1028 761 679 275 186 BsiHKAI G_wGCw'C Cuts at: 3291 3376 4447 3291 Size: 85 1071 4074 Fragments arranged by size: 4074 1071 85 BsmI GAATG_Cn' Cuts at: 2741 2834 2741 Size: 93 5137 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2549 3291 3376 4447 1391 Size: 399 759 742 85 1071 2174 Fragments arranged by size: 2174 1071 759 742 399 85 BspEI T'CCGG_A Cuts at: 4893 4893 Size: 5230 BspHI T'CATG_A Cuts at: 3119 4849 3119 Size: 1730 3500 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2585 844 Size: 1741 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3117 1394 Size: 429 1294 3507 Fragments arranged by size: 3507 1294 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3725 3899 65 Size: 1183 2477 174 1396 Fragments arranged by size: 2477 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3874 4061 1700 Size: 110 2064 187 2869 Fragments arranged by size: 2869 2064 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5230 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5230 BssSI C'ACGA_G Cuts at: 3290 4302 3290 Size: 1012 4218 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5230 BstBI TT'CG_AA Cuts at: 4034 4034 Size: 5230 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5230 BstYI r'GATC_y Cuts at: 1972 2493 2560 2927 3312 3329 4781 4867 4879 Size: 521 67 367 385 17 1452 86 12 Cuts at: 4879 5225 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 521 385 367 346 86 67 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4678 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4491 Fragments arranged by size: 4491 683 56 BtsI GCAGTG_nn' Cuts at: 2063 2199 2746 3540 3560 2063 Size: 136 547 794 20 3733 Fragments arranged by size: 3733 794 547 136 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5230 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5195 DraI TTT'AAA Cuts at: 2534 2534 Size: 5230 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4237 809 Size: 507 2921 1802 Fragments arranged by size: 2921 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2677 3566 5195 Size: 54 1425 50 275 18 847 889 1629 Cuts at: 5195 8 Size: 43 Fragments arranged by size: 1629 1425 889 847 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2677 1537 Size: 275 865 4090 Fragments arranged by size: 4090 865 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3160 1353 Size: 1807 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3817 4191 4337 387 Size: 1064 138 2228 374 146 1280 Fragments arranged by size: 2228 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2180 2537 3293 3890 4677 4945 1239 Size: 393 548 357 756 597 787 268 1524 Fragments arranged by size: 1524 787 756 597 548 393 357 268 EcoNI CCTnn'n_nnAGG Cuts at: 2085 2085 Size: 5230 EcoRI G'AATT_C Cuts at: 2539 2917 2539 Size: 378 4852 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2185 2185 Size: 5230 FspI TGC'GCA Cuts at: 3736 3736 Size: 5230 HaeII r_GCGC'y Cuts at: 1678 4377 1678 Size: 2699 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3871 3903 3945 3977 1373 Size: 32 135 32 2299 32 42 32 2626 Fragments arranged by size: 2626 2299 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2574 2820 669 Size: 988 281 636 246 3079 Fragments arranged by size: 3079 988 636 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5230 HpaI GTT'AAC Cuts at: 2820 2820 Size: 5230 KpnI G_GTAC'C Cuts at: 2555 2555 Size: 5230 MfeI C'AATT_G Cuts at: 2829 2829 Size: 5230 MluI A'CGCG_T Cuts at: 5106 5106 Size: 5230 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4344 4528 1305 Size: 3039 184 2007 Fragments arranged by size: 3039 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3408 Fragments arranged by size: 3408 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3188 3547 3706 518 Size: 648 2022 359 159 2042 Fragments arranged by size: 2042 2022 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2646 3323 4471 4716 1606 Size: 1040 677 1148 245 2120 Fragments arranged by size: 2120 1148 1040 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4678 NdeI CA'TA_TG Cuts at: 387 387 Size: 5230 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5230 NotI GC'GGCC_GC Cuts at: 2677 2677 Size: 5230 NspI r_CATG'y Cuts at: 1132 1229 2588 4133 1132 Size: 97 1359 1545 2229 Fragments arranged by size: 2229 1545 1359 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5230 PciI A'CATG_T Cuts at: 4129 4129 Size: 5230 PflMI CCAn_nnn'nTGG Cuts at: 1108 2081 2227 1108 Size: 973 146 4111 Fragments arranged by size: 4111 973 146 PmeI GTTT'AAAC Cuts at: 2534 2534 Size: 5230 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3299 3331 4812 4844 3299 Size: 32 1481 32 3685 Fragments arranged by size: 3685 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5230 PsiI TTA'TAA Cuts at: 2800 2800 Size: 5230 PstI C_TGCA'G Cuts at: 830 2058 2582 830 Size: 1228 524 3478 Fragments arranged by size: 3478 1228 524 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5230 SalI G'TCGA_C Cuts at: 1936 2572 1936 Size: 636 4594 SbfI CC_TGCA'GG Cuts at: 2582 2582 Size: 5230 ScaI AGT'ACT Cuts at: 3478 5190 3478 Size: 1712 3518 SfcI C'TryA_G Cuts at: 826 1045 2054 2066 2578 3713 4394 4585 826 Size: 219 1009 12 512 1135 681 191 1471 Fragments arranged by size: 1471 1135 1009 681 512 219 191 12 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5230 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5230 SmaI CCC'GGG Cuts at: 1872 2557 1872 Size: 685 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3334 4235 4497 820 Size: 197 926 1391 901 262 1553 Fragments arranged by size: 1553 1391 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3021 493 Size: 2528 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5230 SphI G_CATG'C Cuts at: 1132 2588 1132 Size: 1456 3774 SspI AAT'ATT Cuts at: 5 52 3154 5 Size: 47 3102 2081 Fragments arranged by size: 3102 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5230 StyI C'CwwG_G Cuts at: 513 1065 2669 513 Size: 552 1604 3074 Fragments arranged by size: 3074 1604 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3257 3274 3427 3612 4057 325 Size: 1255 1677 17 153 185 445 1498 Fragments arranged by size: 1677 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3476 5188 96 Size: 274 80 33 51 1443 1499 1712 138 Fragments arranged by size: 1712 1499 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5190 5222 5190 Size: 32 5198 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5230 XbaI T'CTAG_A Cuts at: 2476 2566 2476 Size: 90 5140 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5230 XmaI C'CCGG_G Cuts at: 1870 2555 1870 Size: 685 4545 XmnI GAAnn'nnTTC Cuts at: 2295 3359 2295 Size: 1064 4166 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3038 276 Size: 53 83 186 936 1504 2468 Fragments arranged by size: 2468 1504 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI