Restriction map for
pFN21AB8869
(Circular) (Six-base) MAPSORT of: pFN21AB8869.seq Check: 4694 from: 1 to: 5104
pFN21AB8869 5104 bp
With 182 enzymes: SgfI *
January 16, 2009 15:27 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2914 278
Size: 53 83 186 936 1378 2468
Fragments arranged by size:
2468 1378 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2447 1937
Size: 510 4594
Acc65I G'GTAC_C
Cuts at: 2267 2425 2267
Size: 158 4946
AclI AA'CG_TT
Cuts at: 1563 3231 3604 1563
Size: 1668 373 3063
Fragments arranged by size:
3063 1668 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2082 2214 3167 4551 4819 1632
Size: 450 132 953 1384 268 1917
Fragments arranged by size:
1917 1384 953 450 268 132
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4907
AflIII A'CryG_T
Cuts at: 1203 2329 4003 4980 1203
Size: 1126 1674 977 1327
Fragments arranged by size:
1674 1327 1126 977
AgeI A'CCGG_T
Cuts at: 3935 3935
Size: 5104
AhdI GACnn_n'nnGTC
Cuts at: 3833 3833
Size: 5104
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5104
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5104
AlwNI CAG_nnn'CTG
Cuts at: 2023 2847 4419 2023
Size: 824 1572 2708
Fragments arranged by size:
2708 1572 824
ApaLI G'TGCA_C
Cuts at: 3161 4317 3161
Size: 1156 3948
ApoI r'AATT_y
Cuts at: 1493 2161 2201 2413 2639 2791 4900 1493
Size: 668 40 212 226 152 2109 1697
Fragments arranged by size:
2109 1697 668 226 212 152 40
AseI AT'TA_AT
Cuts at: 160 1032 2244 3658 160
Size: 872 1212 1414 1606
Fragments arranged by size:
1606 1414 1212 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5104
AvaI C'yCGr_G
Cuts at: 1870 1943 2262 2429 1870
Size: 73 319 167 4545
Fragments arranged by size:
4545 319 167 73
AvrII C'CTAG_G
Cuts at: 2155 2155
Size: 5104
BamHI G'GATC_C
Cuts at: 2434 2801 2434
Size: 367 4737
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2267 2425 3880 618
Size: 325 217 627 480 158 1455 1842
Fragments arranged by size:
1842 1455 627 480 325 217 158
BanII G_rGCy'C
Cuts at: 1391 2313 2423 1391
Size: 922 110 4072
Fragments arranged by size:
4072 922 110
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2054 2081 2151 928
Size: 971 155 27 70 3881
Fragments arranged by size:
3881 971 155 70 27
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3295 3329 1903
Size: 34 1358 34 3678
Fragments arranged by size:
3678 1358 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2996 4206 2996
Size: 1210 3894
BclI T'GATC_A
Cuts at: 1548 2178 1548
Size: 630 4474
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3715 136
Size: 107 122 71 631 605 2043 1525
Fragments arranged by size:
2043 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5099 5099
Size: 5104
BlpI GC'TnA_GC
Cuts at: 2521 2521
Size: 5104
Bme1580I G_kGCm'C
Cuts at: 1790 3165 4321 1790
Size: 1375 1156 2573
Fragments arranged by size:
2573 1375 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5104
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2835 3793 442
Size: 416 53 83 399 24 1418 958 1753
Fragments arranged by size:
1753 1418 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5104
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2045 3764 1239
Size: 806 1719 2579
Fragments arranged by size:
2579 1719 806
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3229 4094 4392 3229
Size: 865 298 3941
Fragments arranged by size:
3941 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3767 882
Size: 617 2268 2219
Fragments arranged by size:
2268 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2895 493
Size: 711 1691 2702
Fragments arranged by size:
2702 1691 711
BsaBI GATnn'nnATC
Cuts at: 5098 5098
Size: 5104
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2911 3293 3928 275
Size: 53 83 186 936 1378 382 635 1451
Fragments arranged by size:
1451 1378 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3537 3935 4209 4356 4767 3537
Size: 398 274 147 411 3874
Fragments arranged by size:
3874 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4879
Fragments arranged by size:
4879 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5104
BseYI C'CCAG_C
Cuts at: 4307 4803 4307
Size: 496 4608
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4531
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2554 3315 4343 1540
Size: 275 186 553 761 1028 2301
Fragments arranged by size:
2301 1028 761 553 275 186
BsiHKAI G_wGCw'C
Cuts at: 2313 3165 3250 4321 2313
Size: 852 85 1071 3096
Fragments arranged by size:
3096 1071 852 85
BsmI GAATG_Cn'
Cuts at: 2253 2615 2708 2253
Size: 362 93 4649
Fragments arranged by size:
4649 362 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2313 2423 3165 3250 4321 1391
Size: 399 523 110 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 523 399 110 85
BspEI T'CCGG_A
Cuts at: 4767 4767
Size: 5104
BspHI T'CATG_A
Cuts at: 2181 2313 2993 4723 2181
Size: 132 680 1730 2562
Fragments arranged by size:
2562 1730 680 132
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2459 844
Size: 1615 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2991 1394
Size: 429 1168 3507
Fragments arranged by size:
3507 1168 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3599 3773 65
Size: 1183 2351 174 1396
Fragments arranged by size:
2351 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3748 3935 1700
Size: 110 1938 187 2869
Fragments arranged by size:
2869 1938 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5104
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5104
BssSI C'ACGA_G
Cuts at: 2138 3164 4176 2138
Size: 1026 1012 3066
Fragments arranged by size:
3066 1026 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5104
BstBI TT'CG_AA
Cuts at: 3908 3908
Size: 5104
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5104
BstXI CCAn_nnnn'nTGG
Cuts at: 2102 2102
Size: 5104
BstYI r'GATC_y
Cuts at: 1972 2434 2801 3186 3203 4655 4741 4753 5099
Size: 462 367 385 17 1452 86 12 346
Cuts at: 5099 1972
Size: 1977
Fragments arranged by size:
1977 1452 462 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3613
Fragments arranged by size:
3613 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4365
Fragments arranged by size:
4365 683 56
BtsI GCAGTG_nn'
Cuts at: 2620 3414 3434 2620
Size: 794 20 4290
Fragments arranged by size:
4290 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5104
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5069
DraI TTT'AAA
Cuts at: 2408 2408
Size: 5104
DraIII CAC_nnn'GTG
Cuts at: 2122 2122
Size: 5104
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4111 809
Size: 507 2795 1802
Fragments arranged by size:
2795 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2551 3440 5069
Size: 54 1425 50 275 18 721 889 1629
Cuts at: 5069 8
Size: 43
Fragments arranged by size:
1629 1425 889 721 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2551 1537
Size: 275 739 4090
Fragments arranged by size:
4090 739 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2004 3034 1353
Size: 651 1030 3423
Fragments arranged by size:
3423 1030 651
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3691 4065 4211 387
Size: 1064 138 2102 374 146 1280
Fragments arranged by size:
2102 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2311 2311
Size: 5104
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2045 2082 2214 3167 3764 4551 4819
Size: 393 413 37 132 953 597 787 268
Cuts at: 4819 1239
Size: 1524
Fragments arranged by size:
1524 953 787 597 413 393 268 132
37
EcoRI G'AATT_C
Cuts at: 2413 2791 2413
Size: 378 4726
FspI TGC'GCA
Cuts at: 3610 3610
Size: 5104
HaeII r_GCGC'y
Cuts at: 1678 4251 1678
Size: 2573 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3745 3777 3819 3851 1373
Size: 32 135 32 2173 32 42 32 2626
Fragments arranged by size:
2626 2173 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2448 2694 669
Size: 988 281 510 246 3079
Fragments arranged by size:
3079 988 510 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5104
HpaI GTT'AAC
Cuts at: 2694 2694
Size: 5104
KpnI G_GTAC'C
Cuts at: 2271 2429 2271
Size: 158 4946
MfeI C'AATT_G
Cuts at: 2703 2703
Size: 5104
MluI A'CGCG_T
Cuts at: 4980 4980
Size: 5104
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4218 4402 1305
Size: 2913 184 2007
Fragments arranged by size:
2913 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3282
Fragments arranged by size:
3282 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2180 3062 3421 3580 518
Size: 648 1014 882 359 159 2042
Fragments arranged by size:
2042 1014 882 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2102 2279 2520 3197 4345 4590 1606
Size: 496 177 241 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 496 245 241 177
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3613
Fragments arranged by size:
3613 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5104
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5104
NotI GC'GGCC_GC
Cuts at: 2551 2551
Size: 5104
NspI r_CATG'y
Cuts at: 1132 1229 2333 2462 4007 1132
Size: 97 1104 129 1545 2229
Fragments arranged by size:
2229 1545 1104 129 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5104
PciI A'CATG_T
Cuts at: 2329 4003 2329
Size: 1674 3430
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5104
PmeI GTTT'AAAC
Cuts at: 2408 2408
Size: 5104
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3173 3205 4686 4718 3173
Size: 32 1481 32 3559
Fragments arranged by size:
3559 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5104
PsiI TTA'TAA
Cuts at: 2674 2674
Size: 5104
PspXI vC'TCGA_Gb
Cuts at: 2262 2262
Size: 5104
PstI C_TGCA'G
Cuts at: 830 2456 830
Size: 1626 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5104
PvuII CAG'CTG
Cuts at: 2102 2279 2102
Size: 177 4927
SacI G_AGCT'C
Cuts at: 2313 2313
Size: 5104
SalI G'TCGA_C
Cuts at: 1936 2446 1936
Size: 510 4594
SbfI CC_TGCA'GG
Cuts at: 2456 2456
Size: 5104
ScaI AGT'ACT
Cuts at: 3352 5064 3352
Size: 1712 3392
SfcI C'TryA_G
Cuts at: 826 1045 2452 3587 4268 4459 826
Size: 219 1407 1135 681 191 1471
Fragments arranged by size:
1471 1407 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5104
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5104
SmaI CCC'GGG
Cuts at: 1872 2431 1872
Size: 559 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2262 3208 4109 4371 820
Size: 197 926 319 946 901 262 1553
Fragments arranged by size:
1553 946 926 901 319 262 197
SnaBI TAC'GTA
Cuts at: 493 2895 493
Size: 2402 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5104
SphI G_CATG'C
Cuts at: 1132 2462 1132
Size: 1330 3774
SspI AAT'ATT
Cuts at: 5 52 3028 5
Size: 47 2976 2081
Fragments arranged by size:
2976 2081 47
StuI AGG'CCT
Cuts at: 1517 2301 1517
Size: 784 4320
StyI C'CwwG_G
Cuts at: 513 1065 2004 2155 2543 513
Size: 552 939 151 388 3074
Fragments arranged by size:
3074 939 552 388 151
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3131 3148 3301 3486 3931 325
Size: 1255 1551 17 153 185 445 1498
Fragments arranged by size:
1551 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3350 5062 96
Size: 274 80 33 51 1443 1373 1712 138
Fragments arranged by size:
1712 1443 1373 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5064 5096 5064
Size: 32 5072
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5104
XbaI T'CTAG_A
Cuts at: 2440 2440
Size: 5104
XhoI C'TCGA_G
Cuts at: 1943 2262 1943
Size: 319 4785
XmaI C'CCGG_G
Cuts at: 1870 2429 1870
Size: 559 4545
XmnI GAAnn'nnTTC
Cuts at: 3233 3233
Size: 5104
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2912 276
Size: 53 83 186 936 1378 2468
Fragments arranged by size:
2468 1378 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DraIII DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PspXI PstI PvuI
PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I EcoNI
EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI
SrfI SwaI XcmI