(Circular) (Six-base) MAPSORT of: pFN21AB8866.seq Check: 6296 from: 1 to: 5050 pFN21AB8866 5050 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2860 278 Size: 53 83 186 936 1324 2468 Fragments arranged by size: 2468 1324 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2393 1937 Size: 456 4594 Acc65I G'GTAC_C Cuts at: 2371 2371 Size: 5050 AclI AA'CG_TT Cuts at: 1563 3177 3550 1563 Size: 1614 373 3063 Fragments arranged by size: 3063 1614 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3113 4497 4765 1632 Size: 1481 1384 268 1917 Fragments arranged by size: 1917 1481 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4853 AflIII A'CryG_T Cuts at: 1203 3949 4926 1203 Size: 2746 977 1327 Fragments arranged by size: 2746 1327 977 AgeI A'CCGG_T Cuts at: 3881 3881 Size: 5050 AhdI GACnn_n'nnGTC Cuts at: 3779 3779 Size: 5050 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5050 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5050 AlwNI CAG_nnn'CTG Cuts at: 2793 4365 2793 Size: 1572 3478 ApaLI G'TGCA_C Cuts at: 2189 3107 4263 2189 Size: 918 1156 2976 Fragments arranged by size: 2976 1156 918 ApoI r'AATT_y Cuts at: 1493 2359 2585 2737 4846 1493 Size: 866 226 152 2109 1697 Fragments arranged by size: 2109 1697 866 226 152 AseI AT'TA_AT Cuts at: 160 1032 3604 160 Size: 872 2572 1606 Fragments arranged by size: 2572 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5050 AvaI C'yCGr_G Cuts at: 1870 1943 2375 1870 Size: 73 432 4545 Fragments arranged by size: 4545 432 73 BamHI G'GATC_C Cuts at: 2380 2747 2380 Size: 367 4683 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2371 3826 618 Size: 325 217 627 584 1455 1842 Fragments arranged by size: 1842 1455 627 584 325 217 BanII G_rGCy'C Cuts at: 1391 2215 2369 1391 Size: 824 154 4072 Fragments arranged by size: 4072 824 154 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2268 928 Size: 971 369 3710 Fragments arranged by size: 3710 971 369 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3241 3275 1903 Size: 34 1304 34 3678 Fragments arranged by size: 3678 1304 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2942 4152 2942 Size: 1210 3840 BclI T'GATC_A Cuts at: 1548 1548 Size: 5050 BfrBI ATG'CAT Cuts at: 2122 2122 Size: 5050 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3661 136 Size: 107 122 71 631 605 1989 1525 Fragments arranged by size: 1989 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2096 5045 2096 Size: 2949 2101 BlpI GC'TnA_GC Cuts at: 2467 2467 Size: 5050 Bme1580I G_kGCm'C Cuts at: 1790 2193 3111 4267 1790 Size: 403 918 1156 2573 Fragments arranged by size: 2573 1156 918 403 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5050 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2781 3739 442 Size: 416 53 83 399 24 1364 958 1753 Fragments arranged by size: 1753 1364 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5050 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3710 1239 Size: 2471 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3175 4040 4338 3175 Size: 865 298 3887 Fragments arranged by size: 3887 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3713 882 Size: 617 2214 2219 Fragments arranged by size: 2219 2214 617 BsaAI yAC'GTr Cuts at: 493 1204 2841 493 Size: 711 1637 2702 Fragments arranged by size: 2702 1637 711 BsaBI GATnn'nnATC Cuts at: 5044 5044 Size: 5050 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2857 3239 3874 275 Size: 53 83 186 936 1324 382 635 1451 Fragments arranged by size: 1451 1324 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3483 3881 4155 4302 4713 3483 Size: 398 274 147 411 3820 Fragments arranged by size: 3820 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4825 Fragments arranged by size: 4825 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2205 1186 Size: 1019 4031 BseYI C'CCAG_C Cuts at: 4253 4749 4253 Size: 496 4554 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4477 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2500 3261 4289 1540 Size: 275 186 499 761 1028 2301 Fragments arranged by size: 2301 1028 761 499 275 186 BsiHKAI G_wGCw'C Cuts at: 2193 2215 3111 3196 4267 2193 Size: 22 896 85 1071 2976 Fragments arranged by size: 2976 1071 896 85 22 BsmI GAATG_Cn' Cuts at: 2561 2654 2561 Size: 93 4957 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2193 2215 2369 3111 3196 4267 1391 Size: 399 403 22 154 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 403 399 154 85 22 BspEI T'CCGG_A Cuts at: 4713 4713 Size: 5050 BspHI T'CATG_A Cuts at: 2939 4669 2939 Size: 1730 3320 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2020 2405 844 Size: 1176 385 3489 Fragments arranged by size: 3489 1176 385 BsrBI CCG'CTC Cuts at: 1394 1823 2937 1394 Size: 429 1114 3507 Fragments arranged by size: 3507 1114 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3545 3719 65 Size: 1183 2297 174 1396 Fragments arranged by size: 2297 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3694 3881 1700 Size: 110 1884 187 2869 Fragments arranged by size: 2869 1884 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5050 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5050 BssSI C'ACGA_G Cuts at: 3110 4122 3110 Size: 1012 4038 BstAPI GCAn_nnn'nTGC Cuts at: 794 2188 794 Size: 1394 3656 BstBI TT'CG_AA Cuts at: 3854 3854 Size: 5050 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5050 BstYI r'GATC_y Cuts at: 1972 2096 2380 2747 3132 3149 4601 4687 4699 Size: 124 284 367 385 17 1452 86 12 Cuts at: 4699 5045 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 385 367 346 284 124 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4498 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4311 Fragments arranged by size: 4311 683 56 BtsI GCAGTG_nn' Cuts at: 2566 3360 3380 2566 Size: 794 20 4236 Fragments arranged by size: 4236 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5050 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5015 DraI TTT'AAA Cuts at: 2354 2354 Size: 5050 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4057 809 Size: 507 2741 1802 Fragments arranged by size: 2741 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2497 3386 5015 Size: 54 1425 50 275 18 667 889 1629 Cuts at: 5015 8 Size: 43 Fragments arranged by size: 1629 1425 889 667 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2497 1537 Size: 275 685 4090 Fragments arranged by size: 4090 685 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2087 2980 1353 Size: 734 893 3423 Fragments arranged by size: 3423 893 734 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3637 4011 4157 387 Size: 1064 138 2048 374 146 1280 Fragments arranged by size: 2048 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2213 2213 Size: 5050 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3113 3710 4497 4765 1239 Size: 393 1481 597 787 268 1524 Fragments arranged by size: 1524 1481 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2247 2247 Size: 5050 EcoRI G'AATT_C Cuts at: 2359 2737 2359 Size: 378 4672 FspI TGC'GCA Cuts at: 3556 3556 Size: 5050 HaeII r_GCGC'y Cuts at: 1678 4197 1678 Size: 2519 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2066 2098 3691 3723 3765 Size: 32 135 32 494 32 1593 32 42 Cuts at: 3765 3797 1373 Size: 32 2626 Fragments arranged by size: 2626 1593 494 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2394 2640 669 Size: 988 281 456 246 3079 Fragments arranged by size: 3079 988 456 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5050 HpaI GTT'AAC Cuts at: 2640 2640 Size: 5050 KpnI G_GTAC'C Cuts at: 2375 2375 Size: 5050 MfeI C'AATT_G Cuts at: 2649 2649 Size: 5050 MluI A'CGCG_T Cuts at: 4926 4926 Size: 5050 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4164 4348 1305 Size: 2859 184 2007 Fragments arranged by size: 2859 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3228 Fragments arranged by size: 3228 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3008 3367 3526 518 Size: 648 1842 359 159 2042 Fragments arranged by size: 2042 1842 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2466 3143 4291 4536 1606 Size: 860 677 1148 245 2120 Fragments arranged by size: 2120 1148 860 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4498 NdeI CA'TA_TG Cuts at: 387 387 Size: 5050 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5050 NotI GC'GGCC_GC Cuts at: 2497 2497 Size: 5050 NsiI A_TGCA'T Cuts at: 2124 2124 Size: 5050 NspI r_CATG'y Cuts at: 1132 1229 2408 3953 1132 Size: 97 1179 1545 2229 Fragments arranged by size: 2229 1545 1179 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5050 PciI A'CATG_T Cuts at: 3949 3949 Size: 5050 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5050 PmeI GTTT'AAAC Cuts at: 2354 2354 Size: 5050 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3119 3151 4632 4664 3119 Size: 32 1481 32 3505 Fragments arranged by size: 3505 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5050 PsiI TTA'TAA Cuts at: 2620 2620 Size: 5050 PstI C_TGCA'G Cuts at: 830 2184 2402 830 Size: 1354 218 3478 Fragments arranged by size: 3478 1354 218 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5050 SacI G_AGCT'C Cuts at: 2215 2215 Size: 5050 SalI G'TCGA_C Cuts at: 1936 2392 1936 Size: 456 4594 SbfI CC_TGCA'GG Cuts at: 2402 2402 Size: 5050 ScaI AGT'ACT Cuts at: 3298 5010 3298 Size: 1712 3338 SfcI C'TryA_G Cuts at: 826 1045 2180 2398 3533 4214 4405 826 Size: 219 1135 218 1135 681 191 1471 Fragments arranged by size: 1471 1135 1135 681 219 218 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5050 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5050 SmaI CCC'GGG Cuts at: 1872 2377 1872 Size: 505 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3154 4055 4317 820 Size: 197 926 1211 901 262 1553 Fragments arranged by size: 1553 1211 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2841 493 Size: 2348 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5050 SphI G_CATG'C Cuts at: 1132 2408 1132 Size: 1276 3774 SspI AAT'ATT Cuts at: 5 52 2974 5 Size: 47 2922 2081 Fragments arranged by size: 2922 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5050 StyI C'CwwG_G Cuts at: 513 1065 2206 2489 513 Size: 552 1141 283 3074 Fragments arranged by size: 3074 1141 552 283 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3077 3094 3247 3432 3877 325 Size: 1255 1497 17 153 185 445 1498 Fragments arranged by size: 1498 1497 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3296 5008 96 Size: 274 80 33 51 1443 1319 1712 138 Fragments arranged by size: 1712 1443 1319 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5010 5042 5010 Size: 32 5018 Tth111I GACn'n_nGTC Cuts at: 1316 2267 1316 Size: 951 4099 XbaI T'CTAG_A Cuts at: 2386 2386 Size: 5050 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5050 XmaI C'CCGG_G Cuts at: 1870 2375 1870 Size: 505 4545 XmnI GAAnn'nnTTC Cuts at: 3179 3179 Size: 5050 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2858 276 Size: 53 83 186 936 1324 2468 Fragments arranged by size: 2468 1324 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI