FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8805, 351 aa
  1>>>pF1KB8805 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1923+/-0.000317; mu= 17.6908+/- 0.020
 mean_var=75.2693+/-15.412, 0's: 0 Z-trim(117.6): 4  B-trim: 153 in 1/57
 Lambda= 0.147831
 statistics sampled from 29819 (29822) to 29819 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.35), width:  16
 Scan time:  6.380

The best scores are:                                      opt bits E(85289)
NP_001017970 (OMIM: 611029) cell cycle control pro ( 351) 2479 537.7 1.4e-152
NP_060717 (OMIM: 611028) cell cycle control protei ( 361) 1243 274.1 3.3e-73
NP_001137430 (OMIM: 611028) cell cycle control pro ( 325)  930 207.3 3.8e-53


>>NP_001017970 (OMIM: 611029) cell cycle control protein  (351 aa)
 initn: 2479 init1: 2479 opt: 2479  Z-score: 2860.1  bits: 537.7 E(85289): 1.4e-152
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB8 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB8 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
              310       320       330       340       350 

>>NP_060717 (OMIM: 611028) cell cycle control protein 50  (361 aa)
 initn: 1197 init1: 342 opt: 1243  Z-score: 1435.3  bits: 274.1 E(85289): 3.3e-73
Smith-Waterman score: 1243; 53.4% identity (76.1% similar) in 343 aa overlap (6-347:22-355)

                               10        20        30        40    
pF1KB8                 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGL
                            ::. ...:::::: :::::::::.:.:. .::.::  ::
NP_060 MAMNYNAKDEVDGGPPCAPGGTAK-TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGL
               10        20         30        40        50         

           50        60        70        80        90       100    
pF1KB8 AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELF
        :: .:.:.. .::.:.:.: ::::   .. :. : .         :: :.  :.: . :
NP_060 IFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDV-----TPCFCTINFTLEKSF
      60        70        80        90            100       110    

          110       120       130       140       150       160    
pF1KB8 QGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGA
       .: :..:: :.:::::.:::  ::::.::.:  ::: .: .:: ::.:.    :::::::
NP_060 EGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDK-PIAPCGA
          120       130       140       150       160        170   

          170       180       190       200       210       220    
pF1KB8 IANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTA
       ::::.:::.. :.   . . : . . : ..::::::: .:::::::  . .:   :.::.
NP_060 IANSMFNDTLELFLIGNDSYP-IPIALKKKGIAWWTDKNVKFRNPPG-GDNLEERFKGTT
           180       190        200       210        220       230 

          230       240       250       260        270       280   
pF1KB8 PPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI-RQGNYSAGLPRGAY
        : :: .::: :. ::.:.::::.::.:::::::::::::::  : :...    :: : :
NP_060 KPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRY
             240       250       260       270       280       290 

           290       300       310       320       330       340   
pF1KB8 RVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQ
        .:.::::::. : :.: .:.:.:::::::::::::::..:::. .: : :.::.  .:.
NP_060 SLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYR
             300       310       320       330       340       350 

           350   
pF1KB8 DQDDDDEE  
       ....      
NP_060 NSSNTADITI
             360 

>>NP_001137430 (OMIM: 611028) cell cycle control protein  (325 aa)
 initn: 1080 init1: 342 opt: 930  Z-score: 1075.1  bits: 207.3 E(85289): 3.8e-53
Smith-Waterman score: 1080; 49.9% identity (70.3% similar) in 343 aa overlap (6-347:22-319)

                               10        20        30        40    
pF1KB8                 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGL
                            ::. ...:::::: :::::::::.:.:. .::.::  ::
NP_001 MAMNYNAKDEVDGGPPCAPGGTAK-TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGL
               10        20         30        40        50         

           50        60        70        80        90       100    
pF1KB8 AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELF
        :: .:.:.. .::.:.:.:                                        
NP_001 IFIPIGIGIFVTSNNIREIE----------------------------------------
      60        70                                                 

          110       120       130       140       150       160    
pF1KB8 QGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGA
        : :..:: :.:::::.:::  ::::.::.:  ::: .: .:: ::.:.    :::::::
NP_001 -GNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDK-PIAPCGA
       80        90       100       110       120       130        

          170       180       190       200       210       220    
pF1KB8 IANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTA
       ::::.:::.. :.   . . : . . : ..::::::: .:::::::  . .:   :.::.
NP_001 IANSMFNDTLELFLIGNDSYP-IPIALKKKGIAWWTDKNVKFRNPPG-GDNLEERFKGTT
       140       150        160       170       180        190     

          230       240       250       260        270       280   
pF1KB8 PPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI-RQGNYSAGLPRGAY
        : :: .::: :. ::.:.::::.::.:::::::::::::::  : :...    :: : :
NP_001 KPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRY
         200       210       220       230       240       250     

           290       300       310       320       330       340   
pF1KB8 RVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQ
        .:.::::::. : :.: .:.:.:::::::::::::::..:::. .: : :.::.  .:.
NP_001 SLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYR
         260       270       280       290       300       310     

           350   
pF1KB8 DQDDDDEE  
       ....      
NP_001 NSSNTADITI
         320     




351 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:44:21 2016 done: Fri Nov  4 15:44:22 2016
 Total Scan time:  6.380 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]