FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8805, 351 aa
  1>>>pF1KB8805 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3687+/-0.000707; mu= 16.5399+/- 0.043
 mean_var=72.6505+/-14.481, 0's: 0 Z-trim(110.8): 7  B-trim: 0 in 0/52
 Lambda= 0.150472
 statistics sampled from 11875 (11879) to 11875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS32093.1 TMEM30B gene_id:161291|Hs108|chr14     ( 351) 2479 546.9 9.1e-156
CCDS4983.1 TMEM30A gene_id:55754|Hs108|chr6        ( 361) 1243 278.6 5.5e-75
CCDS47453.1 TMEM30A gene_id:55754|Hs108|chr6       ( 325)  930 210.6 1.4e-54


>>CCDS32093.1 TMEM30B gene_id:161291|Hs108|chr14          (351 aa)
 initn: 2479 init1: 2479 opt: 2479  Z-score: 2910.0  bits: 546.9 E(32554): 9.1e-156
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB8 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB8 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
              310       320       330       340       350 

>>CCDS4983.1 TMEM30A gene_id:55754|Hs108|chr6             (361 aa)
 initn: 1197 init1: 342 opt: 1243  Z-score: 1459.7  bits: 278.6 E(32554): 5.5e-75
Smith-Waterman score: 1243; 53.4% identity (76.1% similar) in 343 aa overlap (6-347:22-355)

                               10        20        30        40    
pF1KB8                 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGL
                            ::. ...:::::: :::::::::.:.:. .::.::  ::
CCDS49 MAMNYNAKDEVDGGPPCAPGGTAK-TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGL
               10        20         30        40        50         

           50        60        70        80        90       100    
pF1KB8 AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELF
        :: .:.:.. .::.:.:.: ::::   .. :. : .         :: :.  :.: . :
CCDS49 IFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDV-----TPCFCTINFTLEKSF
      60        70        80        90            100       110    

          110       120       130       140       150       160    
pF1KB8 QGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGA
       .: :..:: :.:::::.:::  ::::.::.:  ::: .: .:: ::.:.    :::::::
CCDS49 EGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDK-PIAPCGA
          120       130       140       150       160        170   

          170       180       190       200       210       220    
pF1KB8 IANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTA
       ::::.:::.. :.   . . : . . : ..::::::: .:::::::  . .:   :.::.
CCDS49 IANSMFNDTLELFLIGNDSYP-IPIALKKKGIAWWTDKNVKFRNPPG-GDNLEERFKGTT
           180       190        200       210        220       230 

          230       240       250       260        270       280   
pF1KB8 PPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI-RQGNYSAGLPRGAY
        : :: .::: :. ::.:.::::.::.:::::::::::::::  : :...    :: : :
CCDS49 KPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRY
             240       250       260       270       280       290 

           290       300       310       320       330       340   
pF1KB8 RVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQ
        .:.::::::. : :.: .:.:.:::::::::::::::..:::. .: : :.::.  .:.
CCDS49 SLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYR
             300       310       320       330       340       350 

           350   
pF1KB8 DQDDDDEE  
       ....      
CCDS49 NSSNTADITI
             360 

>>CCDS47453.1 TMEM30A gene_id:55754|Hs108|chr6            (325 aa)
 initn: 1080 init1: 342 opt: 930  Z-score: 1093.1  bits: 210.6 E(32554): 1.4e-54
Smith-Waterman score: 1080; 49.9% identity (70.3% similar) in 343 aa overlap (6-347:22-319)

                               10        20        30        40    
pF1KB8                 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGL
                            ::. ...:::::: :::::::::.:.:. .::.::  ::
CCDS47 MAMNYNAKDEVDGGPPCAPGGTAK-TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGL
               10        20         30        40        50         

           50        60        70        80        90       100    
pF1KB8 AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELF
        :: .:.:.. .::.:.:.:                                        
CCDS47 IFIPIGIGIFVTSNNIREIE----------------------------------------
      60        70                                                 

          110       120       130       140       150       160    
pF1KB8 QGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGA
        : :..:: :.:::::.:::  ::::.::.:  ::: .: .:: ::.:.    :::::::
CCDS47 -GNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDK-PIAPCGA
       80        90       100       110       120       130        

          170       180       190       200       210       220    
pF1KB8 IANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTA
       ::::.:::.. :.   . . : . . : ..::::::: .:::::::  . .:   :.::.
CCDS47 IANSMFNDTLELFLIGNDSYP-IPIALKKKGIAWWTDKNVKFRNPPG-GDNLEERFKGTT
       140       150        160       170       180        190     

          230       240       250       260        270       280   
pF1KB8 PPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI-RQGNYSAGLPRGAY
        : :: .::: :. ::.:.::::.::.:::::::::::::::  : :...    :: : :
CCDS47 KPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRY
         200       210       220       230       240       250     

           290       300       310       320       330       340   
pF1KB8 RVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQ
        .:.::::::. : :.: .:.:.:::::::::::::::..:::. .: : :.::.  .:.
CCDS47 SLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYR
         260       270       280       290       300       310     

           350   
pF1KB8 DQDDDDEE  
       ....      
CCDS47 NSSNTADITI
         320     




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:44:20 2016 done: Fri Nov  4 15:44:20 2016
 Total Scan time:  2.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]