Result of FASTA (ccds) for
pFN21AB8734
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8734, 551 aa
1>>>pF1KB8734 551 - 551 aa - 551 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8125+/-0.000935; mu= -5.9677+/- 0.057
mean_var=267.6187+/-54.248, 0's: 0 Z-trim(114.4): 48 B-trim: 30 in 1/52
Lambda= 0.078400
statistics sampled from 14966 (15007) to 14966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.461), width: 16
Scan time: 4.050
The best scores are: opt bits E(32554)
CCDS69579.1 MLLT3 gene_id:4300|Hs108|chr9 ( 565) 2580 304.9 1.6e-82
CCDS6494.1 MLLT3 gene_id:4300|Hs108|chr9 ( 568) 2580 304.9 1.6e-82
CCDS12160.1 MLLT1 gene_id:4298|Hs108|chr19 ( 559) 990 125.1 2.2e-28
>>CCDS69579.1 MLLT3 gene_id:4300|Hs108|chr9 (565 aa)
initn: 2580 init1: 2580 opt: 2580 Z-score: 1594.9 bits: 304.9 E(32554): 1.6e-82
Smith-Waterman score: 3552; 97.0% identity (97.0% similar) in 564 aa overlap (5-551:2-565)
10 20 30 40 50 60
pF1KB8 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSS-------
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 ----------TSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB8 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
420 430 440 450 460 470
470 480 490 500 510 520
pF1KB8 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
480 490 500 510 520 530
530 540 550
pF1KB8 TTFDFDLCSLDKTTVRKLQSYLETSGTS
::::::::::::::::::::::::::::
CCDS69 TTFDFDLCSLDKTTVRKLQSYLETSGTS
540 550 560
>>CCDS6494.1 MLLT3 gene_id:4300|Hs108|chr9 (568 aa)
initn: 2580 init1: 2580 opt: 2580 Z-score: 1594.9 bits: 304.9 E(32554): 1.6e-82
Smith-Waterman score: 3574; 97.0% identity (97.0% similar) in 568 aa overlap (1-551:1-568)
10 20 30 40 50 60
pF1KB8 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSS-------
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
130 140 150 160 170 180
180 190 200 210 220
pF1KB8 ----------TSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENK
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKK
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDIVD
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB8 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESD
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB8 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILE
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB8 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITN
490 500 510 520 530 540
530 540 550
pF1KB8 TTFDFDLCSLDKTTVRKLQSYLETSGTS
::::::::::::::::::::::::::::
CCDS64 TTFDFDLCSLDKTTVRKLQSYLETSGTS
550 560
>>CCDS12160.1 MLLT1 gene_id:4298|Hs108|chr19 (559 aa)
initn: 1485 init1: 831 opt: 990 Z-score: 623.0 bits: 125.1 E(32554): 2.2e-28
Smith-Waterman score: 1792; 54.7% identity (74.0% similar) in 578 aa overlap (1-550:1-559)
10 20 30 40 50 60
pF1KB8 MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFP
: ..:.:::.::::::::.:::::.:::::::::::::::. .:::::::::: ::.:::
CCDS12 MDNQCTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCE
.:.::::.::::::::::::::.::::.:::::::::: : :::::.:::.:::::::::
CCDS12 KPRRVCKEPPYKVEESGYAGFIMPIEVHFKNKEEPRKVCFTYDLFLNLEGNPPVNHLRCE
70 80 90 100 110 120
130 140 150 160
pF1KB8 KLTFNNPTEDFRRKLLKAGG--------------DPNRSI-HTSSSSSSSSSSSSSSSSS
:::::::: .:: :::.::: .:. . : :. :. .... : .
CCDS12 KLTFNNPTTEFRYKLLRAGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKKTKPSHG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 SSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENKPL
:..... :.. :::::. :::.:.: ::: : ::. :: :.. ::::..:.: :..
CCDS12 SKDANKESSKTSKPHKVTKEHRERPRKDS-ESKSSSKELEREQAKSSKDTSRKLGEGRLP
190 200 210 220 230
230 240 250 260 270
pF1KB8 KEEKIVP-KMAFKEPKPMSKEPKPDSNLLTITSGQDKKAP------SKRPPISDSEELSA
:::: : : :::::: :: : .:. . .: : :::: .:: . ::
CCDS12 KEEKAPPPKAAFKEPKMALKETKLEST--SPKGGPPPPPPPPPRASSKRPATADSPKPSA
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 KKRKKSSSEALFKSFSSAPPLILTCS-ADKKQIKDKSHVKMGKVKIESETSEKKKSTLPP
::.:::::.. .. ...: . : .::: :::: .. ::: ::: : ::.
CCDS12 KKQKKSSSKGSRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKA----
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB8 FDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSS----FTPSQTRQQGPLRSIMKDL
.. ..:. :.. : ::.: : ::..:::::.:: : :::...::::::...::
CCDS12 ----LEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRSMVEDL
360 370 380 390 400
400 410 420 430 440 450
pF1KB8 HSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPL
.: ::::: .:... : .: : :. :.:.:: :.:..:. :: .:::::
CCDS12 QS----EESDE-DDSSSGEEAAGKTNPG--RDSRLSFSD-SESDNSADSSLPSREPPPPQ
410 420 430 440 450 460
460 470 480 490 500 510
pF1KB8 LKTN-NNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNL
:... .:: . :: .: .:.: :::: :::::::::::.::::..:::::::
CCDS12 KPPPPNSKVSGRRSPESCSKPEKILKKGTYDKAYTDELVELHRRLMALRERNVLQQIVNL
470 480 490 500 510 520
520 530 540 550
pF1KB8 IEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS
:::::::..::::::::: :::.:::::::: ::. .:
CCDS12 IEETGHFNVTNTTFDFDLFSLDETTVRKLQSCLEAVAT
530 540 550
551 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:04:12 2016 done: Fri Nov 4 15:04:12 2016
Total Scan time: 4.050 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]