Result of FASTA (omim) for
pFN21AB8688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8688, 502 aa
1>>>pF1KB8688 502 - 502 aa - 502 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8766+/-0.000336; mu= 12.4609+/- 0.021
mean_var=135.7362+/-27.643, 0's: 0 Z-trim(118.2): 22 B-trim: 302 in 1/54
Lambda= 0.110085
statistics sampled from 30970 (30991) to 30970 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.363), width: 16
Scan time: 10.940
The best scores are: opt bits E(85289)
NP_001164675 (OMIM: 609787) ubiquitin-associated p ( 502) 3294 534.6 2.5e-151
NP_001164674 (OMIM: 609787) ubiquitin-associated p ( 502) 3294 534.6 2.5e-151
XP_006716842 (OMIM: 609787) PREDICTED: ubiquitin-a ( 502) 3294 534.6 2.5e-151
XP_011516201 (OMIM: 609787) PREDICTED: ubiquitin-a ( 502) 3294 534.6 2.5e-151
XP_016870290 (OMIM: 609787) PREDICTED: ubiquitin-a ( 502) 3294 534.6 2.5e-151
NP_057609 (OMIM: 609787) ubiquitin-associated prot ( 502) 3294 534.6 2.5e-151
NP_001164672 (OMIM: 609787) ubiquitin-associated p ( 566) 3221 523.1 8.5e-148
XP_016870291 (OMIM: 609787) PREDICTED: ubiquitin-a ( 488) 2934 477.4 4e-134
XP_011516200 (OMIM: 609787) PREDICTED: ubiquitin-a ( 509) 2934 477.4 4.1e-134
XP_011516202 (OMIM: 609787) PREDICTED: ubiquitin-a ( 450) 2933 477.2 4.2e-134
NP_001164673 (OMIM: 609787) ubiquitin-associated p ( 538) 2934 477.5 4.3e-134
>>NP_001164675 (OMIM: 609787) ubiquitin-associated prote (502 aa)
initn: 3294 init1: 3294 opt: 3294 Z-score: 2837.8 bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
430 440 450 460 470 480
490 500
pF1KB8 LLLHNNDQDNALEDLMARAGAS
::::::::::::::::::::::
NP_001 LLLHNNDQDNALEDLMARAGAS
490 500
>>NP_001164674 (OMIM: 609787) ubiquitin-associated prote (502 aa)
initn: 3294 init1: 3294 opt: 3294 Z-score: 2837.8 bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
430 440 450 460 470 480
490 500
pF1KB8 LLLHNNDQDNALEDLMARAGAS
::::::::::::::::::::::
NP_001 LLLHNNDQDNALEDLMARAGAS
490 500
>>XP_006716842 (OMIM: 609787) PREDICTED: ubiquitin-assoc (502 aa)
initn: 3294 init1: 3294 opt: 3294 Z-score: 2837.8 bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
430 440 450 460 470 480
490 500
pF1KB8 LLLHNNDQDNALEDLMARAGAS
::::::::::::::::::::::
XP_006 LLLHNNDQDNALEDLMARAGAS
490 500
>>XP_011516201 (OMIM: 609787) PREDICTED: ubiquitin-assoc (502 aa)
initn: 3294 init1: 3294 opt: 3294 Z-score: 2837.8 bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
430 440 450 460 470 480
490 500
pF1KB8 LLLHNNDQDNALEDLMARAGAS
::::::::::::::::::::::
XP_011 LLLHNNDQDNALEDLMARAGAS
490 500
>>XP_016870290 (OMIM: 609787) PREDICTED: ubiquitin-assoc (502 aa)
initn: 3294 init1: 3294 opt: 3294 Z-score: 2837.8 bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
430 440 450 460 470 480
490 500
pF1KB8 LLLHNNDQDNALEDLMARAGAS
::::::::::::::::::::::
XP_016 LLLHNNDQDNALEDLMARAGAS
490 500
>>NP_057609 (OMIM: 609787) ubiquitin-associated protein (502 aa)
initn: 3294 init1: 3294 opt: 3294 Z-score: 2837.8 bits: 534.6 E(85289): 2.5e-151
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
430 440 450 460 470 480
490 500
pF1KB8 LLLHNNDQDNALEDLMARAGAS
::::::::::::::::::::::
NP_057 LLLHNNDQDNALEDLMARAGAS
490 500
>>NP_001164672 (OMIM: 609787) ubiquitin-associated prote (566 aa)
initn: 3221 init1: 3221 opt: 3221 Z-score: 2774.5 bits: 523.1 E(85289): 8.5e-148
Smith-Waterman score: 3221; 100.0% identity (100.0% similar) in 491 aa overlap (12-502:76-566)
10 20 30 40
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFS
::::::::::::::::::::::::::::::
NP_001 AVGSSAGTEPGRPAGASTFRLLRRRQQRHSGTFSYLDDVPFKTGDKFKTPAKVGLPIGFS
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB8 LPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSK
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB8 MSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFEC
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB8 EEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERA
230 240 250 260 270 280
230 240 250 260 270 280
pF1KB8 TLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTA
290 300 310 320 330 340
290 300 310 320 330 340
pF1KB8 KLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMP
350 360 370 380 390 400
350 360 370 380 390 400
pF1KB8 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVN
410 420 430 440 450 460
410 420 430 440 450 460
pF1KB8 MGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFL
470 480 490 500 510 520
470 480 490 500
pF1KB8 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
:::::::::::::::::::::::::::::::::::::::::
NP_001 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
530 540 550 560
>>XP_016870291 (OMIM: 609787) PREDICTED: ubiquitin-assoc (488 aa)
initn: 2933 init1: 2933 opt: 2934 Z-score: 2529.0 bits: 477.4 E(85289): 4e-134
Smith-Waterman score: 2934; 99.1% identity (99.6% similar) in 454 aa overlap (49-502:35-488)
20 30 40 50 60 70
pF1KB8 DVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAERE
:. .:::::::::::::::::::::::::
XP_016 NLCLLGSSHPPTSASQVAGTTGSKWLLRSWVQIFMYDFSLEKKTIEWAEEIKKIEEAERE
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB8 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB8 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB8 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
190 200 210 220 230 240
260 270 280 290 300 310
pF1KB8 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
250 260 270 280 290 300
320 330 340 350 360 370
pF1KB8 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
310 320 330 340 350 360
380 390 400 410 420 430
pF1KB8 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
370 380 390 400 410 420
440 450 460 470 480 490
pF1KB8 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
430 440 450 460 470 480
500
pF1KB8 AGAS
::::
XP_016 AGAS
>>XP_011516200 (OMIM: 609787) PREDICTED: ubiquitin-assoc (509 aa)
initn: 2933 init1: 2933 opt: 2934 Z-score: 2528.7 bits: 477.4 E(85289): 4.1e-134
Smith-Waterman score: 2934; 99.1% identity (99.6% similar) in 454 aa overlap (49-502:56-509)
20 30 40 50 60 70
pF1KB8 DVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAERE
:. .:::::::::::::::::::::::::
XP_011 GLRTRWELEDVREGDPDFSKEGSKWLLRSWVQIFMYDFSLEKKTIEWAEEIKKIEEAERE
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB8 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSS
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB8 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDN
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB8 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIP
210 220 230 240 250 260
260 270 280 290 300 310
pF1KB8 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHT
270 280 290 300 310 320
320 330 340 350 360 370
pF1KB8 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSC
330 340 350 360 370 380
380 390 400 410 420 430
pF1KB8 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGF
390 400 410 420 430 440
440 450 460 470 480 490
pF1KB8 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR
450 460 470 480 490 500
500
pF1KB8 AGAS
::::
XP_011 AGAS
>>XP_011516202 (OMIM: 609787) PREDICTED: ubiquitin-assoc (450 aa)
initn: 2933 init1: 2933 opt: 2933 Z-score: 2528.6 bits: 477.2 E(85289): 4.2e-134
Smith-Waterman score: 2933; 100.0% identity (100.0% similar) in 449 aa overlap (54-502:2-450)
30 40 50 60 70 80
pF1KB8 TGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKI
::::::::::::::::::::::::::::::
XP_011 MYDFSLEKKTIEWAEEIKKIEEAEREAECKI
10 20 30
90 100 110 120 130 140
pF1KB8 AEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 VLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRG
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 GSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 KSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSA
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 LNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYS
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 ELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 EEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
400 410 420 430 440 450
502 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:36:12 2016 done: Fri Nov 4 14:36:14 2016
Total Scan time: 10.940 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]