FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8671, 396 aa
  1>>>pF1KB8671 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8005+/-0.000862; mu= 14.2590+/- 0.052
 mean_var=71.2076+/-14.241, 0's: 0 Z-trim(106.5): 15  B-trim: 0 in 0/49
 Lambda= 0.151989
 statistics sampled from 8997 (9008) to 8997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.277), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS2255.1 OLA1 gene_id:29789|Hs108|chr2           ( 396) 2657 591.8 3.6e-169
CCDS42779.1 OLA1 gene_id:29789|Hs108|chr2          ( 238) 1576 354.7 5.2e-98


>>CCDS2255.1 OLA1 gene_id:29789|Hs108|chr2                (396 aa)
 initn: 2657 init1: 2657 opt: 2657  Z-score: 3150.7  bits: 591.8 E(32554): 3.6e-169
Smith-Waterman score: 2657; 99.7% identity (99.7% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB8 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKWLIKIKEWVDKCDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGF
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 AALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 AALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSEN
              310       320       330       340       350       360

              370       380       390      
pF1KB8 AVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK
       ::::::::::::::::::::::::::::::::::::
CCDS22 AVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKKK
              370       380       390      

>>CCDS42779.1 OLA1 gene_id:29789|Hs108|chr2               (238 aa)
 initn: 1576 init1: 1576 opt: 1576  Z-score: 1873.1  bits: 354.7 E(32554): 5.2e-98
Smith-Waterman score: 1576; 99.6% identity (99.6% similar) in 238 aa overlap (159-396:1-238)

      130       140       150       160       170       180        
pF1KB8 DDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCK
                                     ::::::::::::::::::::::::::::::
CCDS42                               MIGPIIDKLEKVAVRGGDKKLKPEYDIMCK
                                             10        20        30

      190       200       210       220       230       240        
pF1KB8 VKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIK
               40        50        60        70        80        90

      250       260       270       280       290       300        
pF1KB8 EWVDKCDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYF
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYF
              100       110       120       130       140       150

      310       320       330       340       350       360        
pF1KB8 FTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKY
              160       170       180       190       200       210

      370       380       390      
pF1KB8 RQQGRNYIVEDGDIIFFKFNTPQQPKKK
       ::::::::::::::::::::::::::::
CCDS42 RQQGRNYIVEDGDIIFFKFNTPQQPKKK
              220       230        




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:25:28 2016 done: Fri Nov  4 14:25:29 2016
 Total Scan time:  2.590 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]