Result of FASTA (omim) for
pFN21AB8663
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8663, 558 aa
1>>>pF1KB8663 558 - 558 aa - 558 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.7588+/-0.000573; mu= -10.5983+/- 0.035
mean_var=513.4569+/-104.149, 0's: 0 Z-trim(117.9): 150 B-trim: 0 in 0/55
Lambda= 0.056601
statistics sampled from 30092 (30234) to 30092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.354), width: 16
Scan time: 11.610
The best scores are: opt bits E(85289)
NP_115517 (OMIM: 616173) nuclear speckle splicing ( 558) 3688 316.5 1.4e-85
XP_016880698 (OMIM: 616173) PREDICTED: nuclear spe ( 588) 3427 295.2 3.7e-79
XP_011523647 (OMIM: 616173) PREDICTED: nuclear spe ( 537) 3425 295.0 3.9e-79
XP_016880700 (OMIM: 616173) PREDICTED: nuclear spe ( 504) 3335 287.6 6.2e-77
XP_016880699 (OMIM: 616173) PREDICTED: nuclear spe ( 504) 3335 287.6 6.2e-77
XP_016880702 (OMIM: 616173) PREDICTED: nuclear spe ( 504) 3335 287.6 6.2e-77
XP_016880701 (OMIM: 616173) PREDICTED: nuclear spe ( 504) 3335 287.6 6.2e-77
XP_016880704 (OMIM: 616173) PREDICTED: nuclear spe ( 504) 3335 287.6 6.2e-77
XP_016880703 (OMIM: 616173) PREDICTED: nuclear spe ( 504) 3335 287.6 6.2e-77
NP_001248396 (OMIM: 616173) nuclear speckle splici ( 504) 3335 287.6 6.2e-77
NP_055885 (OMIM: 616453) zinc finger CCCH domain-c (1564) 376 46.6 0.00071
XP_005266369 (OMIM: 616453) PREDICTED: zinc finger (1564) 376 46.6 0.00071
NP_001317496 (OMIM: 616453) zinc finger CCCH domai (1668) 376 46.6 0.00074
NP_001317494 (OMIM: 616453) zinc finger CCCH domai (1668) 376 46.6 0.00074
NP_001317495 (OMIM: 616453) zinc finger CCCH domai (1668) 376 46.6 0.00074
XP_016875966 (OMIM: 616453) PREDICTED: zinc finger (1669) 376 46.6 0.00074
XP_005266367 (OMIM: 616453) PREDICTED: zinc finger (1669) 376 46.6 0.00074
XP_016875968 (OMIM: 616453) PREDICTED: zinc finger (1669) 376 46.6 0.00074
XP_016875967 (OMIM: 616453) PREDICTED: zinc finger (1669) 376 46.6 0.00074
NP_001317493 (OMIM: 616453) zinc finger CCCH domai (1669) 376 46.6 0.00074
NP_001070256 (OMIM: 616453) zinc finger CCCH domai (1669) 376 46.6 0.00074
XP_016875969 (OMIM: 616453) PREDICTED: zinc finger (1669) 376 46.6 0.00074
NP_001310464 (OMIM: 609268) splicing regulatory gl ( 358) 328 41.9 0.004
NP_001310463 (OMIM: 609268) splicing regulatory gl ( 359) 325 41.7 0.0048
XP_016864545 (OMIM: 609268) PREDICTED: splicing re ( 359) 325 41.7 0.0048
NP_001257421 (OMIM: 609268) splicing regulatory gl ( 507) 328 42.1 0.0051
NP_001310458 (OMIM: 609268) splicing regulatory gl ( 623) 328 42.2 0.0058
NP_001310456 (OMIM: 609268) splicing regulatory gl ( 508) 325 41.9 0.006
NP_631907 (OMIM: 609268) splicing regulatory gluta ( 508) 325 41.9 0.006
XP_011541473 (OMIM: 609268) PREDICTED: splicing re ( 508) 325 41.9 0.006
NP_001070667 (OMIM: 609268) splicing regulatory gl ( 624) 325 42.0 0.0069
>>NP_115517 (OMIM: 616173) nuclear speckle splicing regu (558 aa)
initn: 3688 init1: 3688 opt: 3688 Z-score: 1657.5 bits: 316.5 E(85289): 1.4e-85
Smith-Waterman score: 3688; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)
10 20 30 40 50 60
pF1KB8 MAIPGRQYGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MAIPGRQYGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SGFYRHLLNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SGFYRHLLNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 QEDKPRARDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QEDKPRARDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 MKVRKERYENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MKVRKERYENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 DKERNQEKPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 DKERNQEKPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYL
490 500 510 520 530 540
550
pF1KB8 ARQMARVNAKTYIEKEDD
::::::::::::::::::
NP_115 ARQMARVNAKTYIEKEDD
550
>>XP_016880698 (OMIM: 616173) PREDICTED: nuclear speckle (588 aa)
initn: 3427 init1: 3427 opt: 3427 Z-score: 1542.1 bits: 295.2 E(85289): 3.7e-79
Smith-Waterman score: 3427; 99.8% identity (100.0% similar) in 521 aa overlap (38-558:68-588)
10 20 30 40 50 60
pF1KB8 YGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALA
.:::::::::::::::::::::::::::::
XP_016 FKGKLLKFGIRVPELESCFAIHQLFVLKFSQTSVSESLQREAAKKQAMKQTKLEIQKALA
40 50 60 70 80 90
70 80 90 100 110 120
pF1KB8 EDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQ
100 110 120 130 140 150
130 140 150 160 170 180
pF1KB8 REREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHL
160 170 180 190 200 210
190 200 210 220 230 240
pF1KB8 LNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDAD
220 230 240 250 260 270
250 260 270 280 290 300
pF1KB8 SDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGS
280 290 300 310 320 330
310 320 330 340 350 360
pF1KB8 RTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRA
340 350 360 370 380 390
370 380 390 400 410 420
pF1KB8 RDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKER
400 410 420 430 440 450
430 440 450 460 470 480
pF1KB8 YENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQE
460 470 480 490 500 510
490 500 510 520 530 540
pF1KB8 KPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARV
520 530 540 550 560 570
550
pF1KB8 NAKTYIEKEDD
:::::::::::
XP_016 NAKTYIEKEDD
580
>>XP_011523647 (OMIM: 616173) PREDICTED: nuclear speckle (537 aa)
initn: 3460 init1: 3425 opt: 3425 Z-score: 1541.6 bits: 295.0 E(85289): 3.9e-79
Smith-Waterman score: 3425; 100.0% identity (100.0% similar) in 520 aa overlap (39-558:18-537)
10 20 30 40 50 60
pF1KB8 GLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAE
::::::::::::::::::::::::::::::
XP_011 MAIPGRQNIVLRSHRKRTSVSESLQREAAKKQAMKQTKLEIQKALAE
10 20 30 40
70 80 90 100 110 120
pF1KB8 DATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQR
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 EREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 NQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 DFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSR
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 TSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRAR
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB8 DQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERY
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB8 ENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEK
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB8 PSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVN
470 480 490 500 510 520
550
pF1KB8 AKTYIEKEDD
::::::::::
XP_011 AKTYIEKEDD
530
>>XP_016880700 (OMIM: 616173) PREDICTED: nuclear speckle (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
XP_016 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
>>XP_016880699 (OMIM: 616173) PREDICTED: nuclear speckle (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
XP_016 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
>>XP_016880702 (OMIM: 616173) PREDICTED: nuclear speckle (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
XP_016 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
>>XP_016880701 (OMIM: 616173) PREDICTED: nuclear speckle (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
XP_016 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
>>XP_016880704 (OMIM: 616173) PREDICTED: nuclear speckle (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
XP_016 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
>>XP_016880703 (OMIM: 616173) PREDICTED: nuclear speckle (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
XP_016 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
>>NP_001248396 (OMIM: 616173) nuclear speckle splicing r (504 aa)
initn: 3335 init1: 3335 opt: 3335 Z-score: 1502.3 bits: 287.6 E(85289): 6.2e-77
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)
30 40 50 60 70 80
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
::::::::::::::::::::::::::::::
NP_001 MKQTKLEIQKALAEDATVYEYDSIYDEMQK
10 20 30
90 100 110 120 130 140
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
400 410 420 430 440 450
510 520 530 540 550
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
460 470 480 490 500
558 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:20:45 2016 done: Fri Nov 4 14:20:46 2016
Total Scan time: 11.610 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]