(Circular) (Six-base) MAPSORT of: pFN21AB8586.seq Check: 434 from: 1 to: 5623 pFN21AB8586 5623 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3433 278 Size: 53 83 186 936 1897 2468 Fragments arranged by size: 2468 1897 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2966 1937 Size: 1029 4594 Acc65I G'GTAC_C Cuts at: 2944 2944 Size: 5623 AclI AA'CG_TT Cuts at: 1563 3750 4123 1563 Size: 2187 373 3063 Fragments arranged by size: 3063 2187 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3686 5070 5338 1632 Size: 2054 1384 268 1917 Fragments arranged by size: 2054 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5426 AflIII A'CryG_T Cuts at: 1203 2770 4522 5499 1203 Size: 1567 1752 977 1327 Fragments arranged by size: 1752 1567 1327 977 AgeI A'CCGG_T Cuts at: 4454 4454 Size: 5623 AhdI GACnn_n'nnGTC Cuts at: 4352 4352 Size: 5623 AleI CACnn'nnGTG Cuts at: 1166 2789 1166 Size: 1623 4000 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5623 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2570 2602 2570 Size: 32 5591 AlwNI CAG_nnn'CTG Cuts at: 2906 3366 4938 2906 Size: 460 1572 3591 Fragments arranged by size: 3591 1572 460 ApaLI G'TGCA_C Cuts at: 3680 4836 3680 Size: 1156 4467 ApoI r'AATT_y Cuts at: 1493 2036 2474 2932 3158 3310 5419 1493 Size: 543 438 458 226 152 2109 1697 Fragments arranged by size: 2109 1697 543 458 438 226 152 AseI AT'TA_AT Cuts at: 160 1032 4177 160 Size: 872 3145 1606 Fragments arranged by size: 3145 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5623 AvaI C'yCGr_G Cuts at: 1870 1943 2318 2948 1870 Size: 73 375 630 4545 Fragments arranged by size: 4545 630 375 73 BamHI G'GATC_C Cuts at: 2098 2129 2953 3320 2098 Size: 31 824 367 4401 Fragments arranged by size: 4401 824 367 31 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2944 4399 618 Size: 325 217 627 1157 1455 1842 Fragments arranged by size: 1842 1455 1157 627 325 217 BanII G_rGCy'C Cuts at: 1391 2942 1391 Size: 1551 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2459 928 Size: 971 560 4092 Fragments arranged by size: 4092 971 560 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3814 3848 1903 Size: 34 1877 34 3678 Fragments arranged by size: 3678 1877 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3515 4725 3515 Size: 1210 4413 BclI T'GATC_A Cuts at: 1548 1548 Size: 5623 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4234 136 Size: 107 122 71 631 605 2562 1525 Fragments arranged by size: 2562 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2359 5618 2359 Size: 3259 2364 BlpI GC'TnA_GC Cuts at: 3040 3040 Size: 5623 Bme1580I G_kGCm'C Cuts at: 1790 2472 3684 4840 1790 Size: 682 1212 1156 2573 Fragments arranged by size: 2573 1212 1156 682 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5623 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2180 3354 4312 Size: 416 53 83 399 24 763 1174 958 Cuts at: 4312 442 Size: 1753 Fragments arranged by size: 1753 1174 958 763 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5623 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2621 4283 1239 Size: 1382 1662 2579 Fragments arranged by size: 2579 1662 1382 Bpu10I CC'TnA_GC Cuts at: 2143 2143 Size: 5623 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3748 4613 4911 3748 Size: 865 298 4460 Fragments arranged by size: 4460 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4286 882 Size: 617 2787 2219 Fragments arranged by size: 2787 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3414 493 Size: 711 2210 2702 Fragments arranged by size: 2702 2210 711 BsaBI GATnn'nnATC Cuts at: 5617 5617 Size: 5623 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3430 3812 4447 275 Size: 53 83 186 936 1897 382 635 1451 Fragments arranged by size: 1897 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4056 4454 4728 4875 5286 4056 Size: 398 274 147 411 4393 Fragments arranged by size: 4393 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2570 2594 2600 2624 2872 Size: 30 165 30 1167 24 6 24 248 Cuts at: 2872 2902 1178 Size: 30 3899 Fragments arranged by size: 3899 1167 248 165 30 30 30 24 24 6 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5623 BseYI C'CCAG_C Cuts at: 4826 5322 4826 Size: 496 5127 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5050 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3073 3834 4862 1540 Size: 275 186 1072 761 1028 2301 Fragments arranged by size: 2301 1072 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3684 3769 4840 3684 Size: 85 1071 4467 Fragments arranged by size: 4467 1071 85 BsmI GAATG_Cn' Cuts at: 3134 3227 3134 Size: 93 5530 BsmBI CGTCTCn'nnnn_ Cuts at: 2590 2590 Size: 5623 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2472 2942 3684 3769 4840 1391 Size: 399 682 470 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 682 470 399 85 BspEI T'CCGG_A Cuts at: 5286 5286 Size: 5623 BspHI T'CATG_A Cuts at: 2697 3512 5242 2697 Size: 815 1730 3078 Fragments arranged by size: 3078 1730 815 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2978 844 Size: 2134 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3510 1394 Size: 429 1687 3507 Fragments arranged by size: 3507 1687 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2050 2739 4118 4292 65 Size: 1183 802 689 1379 174 1396 Fragments arranged by size: 1396 1379 1183 802 689 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4267 4454 1700 Size: 110 2457 187 2869 Fragments arranged by size: 2869 2457 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5623 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5623 BssSI C'ACGA_G Cuts at: 3683 4695 3683 Size: 1012 4611 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5623 BstBI TT'CG_AA Cuts at: 4427 4427 Size: 5623 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5623 BstYI r'GATC_y Cuts at: 1972 2098 2129 2300 2359 2720 2953 3320 3705 Size: 126 31 171 59 361 233 367 385 Cuts at: 3705 3722 5174 5260 5272 5618 1972 Size: 17 1452 86 12 346 1977 Fragments arranged by size: 1977 1452 385 367 361 346 233 171 126 86 59 31 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4132 Fragments arranged by size: 4132 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4884 Fragments arranged by size: 4884 683 56 BtsI GCAGTG_nn' Cuts at: 3139 3933 3953 3139 Size: 794 20 4809 Fragments arranged by size: 4809 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5623 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5588 DraI TTT'AAA Cuts at: 2927 2927 Size: 5623 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4630 809 Size: 507 3314 1802 Fragments arranged by size: 3314 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2744 2781 3070 Size: 54 1425 50 275 18 914 37 289 Cuts at: 3070 3959 5588 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 914 889 289 275 54 50 43 37 18 EagI C'GGCC_G Cuts at: 1537 1812 3070 1537 Size: 275 1258 4090 Fragments arranged by size: 4090 1258 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2143 2636 3553 1353 Size: 790 493 917 3423 Fragments arranged by size: 3423 917 790 493 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4210 4584 4730 387 Size: 1064 138 2621 374 146 1280 Fragments arranged by size: 2621 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2621 3686 4283 5070 5338 1239 Size: 393 989 1065 597 787 268 1524 Fragments arranged by size: 1524 1065 989 787 597 393 268 EcoRI G'AATT_C Cuts at: 2474 2932 3310 2474 Size: 458 378 4787 Fragments arranged by size: 4787 458 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2321 2321 Size: 5623 FspI TGC'GCA Cuts at: 4129 4129 Size: 5623 HaeII r_GCGC'y Cuts at: 1678 4770 1678 Size: 3092 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2613 2645 2851 2883 4264 Size: 32 135 32 1041 32 206 32 1381 Cuts at: 4264 4296 4338 4370 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1381 1041 206 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2967 3213 669 Size: 988 281 1029 246 3079 Fragments arranged by size: 3079 1029 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5623 HpaI GTT'AAC Cuts at: 3213 3213 Size: 5623 KpnI G_GTAC'C Cuts at: 2948 2948 Size: 5623 MfeI C'AATT_G Cuts at: 2787 2796 3222 2787 Size: 9 426 5188 Fragments arranged by size: 5188 426 9 MluI A'CGCG_T Cuts at: 2770 5499 2770 Size: 2729 2894 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2451 2666 4737 4921 1305 Size: 1146 215 2071 184 2007 Fragments arranged by size: 2071 2007 1146 215 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2746 2783 10 Size: 54 1425 343 914 37 2850 Fragments arranged by size: 2850 1425 914 343 54 37 MslI CAynn'nnrTG Cuts at: 518 1166 2789 3581 3940 4099 518 Size: 648 1623 792 359 159 2042 Fragments arranged by size: 2042 1623 792 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2750 3039 3716 4864 5109 1606 Size: 1144 289 677 1148 245 2120 Fragments arranged by size: 2120 1148 1144 677 289 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4132 Fragments arranged by size: 4132 939 552 NdeI CA'TA_TG Cuts at: 387 2811 387 Size: 2424 3199 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5623 NotI GC'GGCC_GC Cuts at: 3070 3070 Size: 5623 NspI r_CATG'y Cuts at: 1132 1229 2981 4526 1132 Size: 97 1752 1545 2229 Fragments arranged by size: 2229 1752 1545 97 PasI CC'CwG_GG Cuts at: 1348 2707 1348 Size: 1359 4264 PciI A'CATG_T Cuts at: 4522 4522 Size: 5623 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5623 PmeI GTTT'AAAC Cuts at: 2927 2927 Size: 5623 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2570 2602 3692 3724 5205 5237 2570 Size: 32 1090 32 1481 32 2956 Fragments arranged by size: 2956 1481 1090 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5623 PsiI TTA'TAA Cuts at: 3193 3193 Size: 5623 PstI C_TGCA'G Cuts at: 830 2911 2975 830 Size: 2081 64 3478 Fragments arranged by size: 3478 2081 64 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5623 PvuII CAG'CTG Cuts at: 2750 2750 Size: 5623 SalI G'TCGA_C Cuts at: 1936 2965 1936 Size: 1029 4594 SbfI CC_TGCA'GG Cuts at: 2975 2975 Size: 5623 ScaI AGT'ACT Cuts at: 3871 5583 3871 Size: 1712 3911 SexAI A'CCwGG_T Cuts at: 2277 2277 Size: 5623 SfcI C'TryA_G Cuts at: 826 1045 2907 2971 4106 4787 4978 826 Size: 219 1862 64 1135 681 191 1471 Fragments arranged by size: 1862 1471 1135 681 219 191 64 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5623 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5623 SmaI CCC'GGG Cuts at: 1872 2320 2950 1872 Size: 448 630 4545 Fragments arranged by size: 4545 630 448 SmlI C'TyrA_G Cuts at: 820 1017 1943 3727 4628 4890 820 Size: 197 926 1784 901 262 1553 Fragments arranged by size: 1784 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3414 493 Size: 2921 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5623 SphI G_CATG'C Cuts at: 1132 2981 1132 Size: 1849 3774 SspI AAT'ATT Cuts at: 5 52 3547 5 Size: 47 3495 2081 Fragments arranged by size: 3495 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5623 StyI C'CwwG_G Cuts at: 513 1065 2004 3062 513 Size: 552 939 1058 3074 Fragments arranged by size: 3074 1058 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3650 3667 3820 4005 4450 325 Size: 1255 2070 17 153 185 445 1498 Fragments arranged by size: 2070 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3869 5581 96 Size: 274 80 33 51 1443 1892 1712 138 Fragments arranged by size: 1892 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2594 2626 5583 5615 2594 Size: 32 2957 32 2602 Fragments arranged by size: 2957 2602 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5623 XbaI T'CTAG_A Cuts at: 2959 2959 Size: 5623 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5623 XmaI C'CCGG_G Cuts at: 1870 2318 2948 1870 Size: 448 630 4545 Fragments arranged by size: 4545 630 448 XmnI GAAnn'nnTTC Cuts at: 3752 3752 Size: 5623 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3431 276 Size: 53 83 186 936 1897 2468 Fragments arranged by size: 2468 1897 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI