FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8584, 773 aa
  1>>>pF1KB8584 773 - 773 aa - 773 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5364+/-0.00124; mu= -7.2485+/- 0.074
 mean_var=388.8639+/-81.066, 0's: 0 Z-trim(112.4): 29  B-trim: 0 in 0/54
 Lambda= 0.065039
 statistics sampled from 13157 (13178) to 13157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.405), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS35431.1 PASD1 gene_id:139135|Hs108|chrX        ( 773) 5210 503.7 4.7e-142


>>CCDS35431.1 PASD1 gene_id:139135|Hs108|chrX             (773 aa)
 initn: 5210 init1: 5210 opt: 5210  Z-score: 2663.9  bits: 503.7 E(32554): 4.7e-142
Smith-Waterman score: 5210; 100.0% identity (100.0% similar) in 773 aa overlap (1-773:1-773)

               10        20        30        40        50        60
pF1KB8 MKMRGEKRRDKVNPKSSQRKLNWIPSFPTYDYFNQVTLQLLDGFMITLSTDGVIICVAEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKMRGEKRRDKVNPKSSQRKLNWIPSFPTYDYFNQVTLQLLDGFMITLSTDGVIICVAEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ISSLLGHLPAEIVGKKLLSLLPDEEKDEVYQKIILKFPLLNSETHIEFCCHLKRGNVEHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ISSLLGHLPAEIVGKKLLSLLPDEEKDEVYQKIILKFPLLNSETHIEFCCHLKRGNVEHG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DSSAYENVKFIVNVRDICNEFPVVFSGLFSSHLCADFAACVPQEDRLYLVGNVCILRTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DSSAYENVKFIVNVRDICNEFPVVFSGLFSSHLCADFAACVPQEDRLYLVGNVCILRTQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LQQLYTSKAVSDEAVLTQDSDEEPFVGELSSSQGQRGHTSMKAVYVEPAAAAAAAAISDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LQQLYTSKAVSDEAVLTQDSDEEPFVGELSSSQGQRGHTSMKAVYVEPAAAAAAAAISDD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QIDIAEVEQYGPQENVHMFVDSDSTYCSSTVFLDTMPESPALSLQDFRGEPEVNPLYRAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QIDIAEVEQYGPQENVHMFVDSDSTYCSSTVFLDTMPESPALSLQDFRGEPEVNPLYRAD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PVDLEFSVDQVDSVDQEGPMDQQDPENPVAPLDQAGLMDPVDPEDSVDLGAAGASAQPLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PVDLEFSVDQVDSVDQEGPMDQQDPENPVAPLDQAGLMDPVDPEDSVDLGAAGASAQPLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 PSSPVAYDIISQELELMKKLKEQLEERTWLLHDAIQNQQNALELMMDHLQKQPNTLRHVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PSSPVAYDIISQELELMKKLKEQLEERTWLLHDAIQNQQNALELMMDHLQKQPNTLRHVV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 IPDLQSSEAVPKKQQKQHAGQVKRPLPHPKDVKCFCGLSLSNSLKNTGELQEPCVAFNQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IPDLQSSEAVPKKQQKQHAGQVKRPLPHPKDVKCFCGLSLSNSLKNTGELQEPCVAFNQQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 QLVQQEQHLKEQQRQLREQLQQLREQRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QLVQQEQHLKEQQRQLREQLQQLREQRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 KKLQERKKWQGQMLQKEPEEEQQKQQLQEQPLKHNVIVGNERVQICLQNPRDVSVPLCNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KKLQERKKWQGQMLQKEPEEEQQKQQLQEQPLKHNVIVGNERVQICLQNPRDVSVPLCNH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 PVRFLQAQPIVPVQRAAEQQPSGFYQDENCGQQEDESQSFYPEAYQGPPVNQLPLIDTSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PVRFLQAQPIVPVQRAAEQQPSGFYQDENCGQQEDESQSFYPEAYQGPPVNQLPLIDTSN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 SEAISSSSIPQFPITSDSTISTLETPQDYIRLWQELSDSLGPVVQVNTWSCDEQGTLHGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SEAISSSSIPQFPITSDSTISTLETPQDYIRLWQELSDSLGPVVQVNTWSCDEQGTLHGQ
              670       680       690       700       710       720

              730       740       750       760       770   
pF1KB8 PTYHQVQVSEVGVEGPPDPQAFQGPAAYQPDQMRSAEQTRLMPAEQRDSNKPC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PTYHQVQVSEVGVEGPPDPQAFQGPAAYQPDQMRSAEQTRLMPAEQRDSNKPC
              730       740       750       760       770   




773 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:32:04 2016 done: Fri Nov  4 13:32:05 2016
 Total Scan time:  3.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]