Result of FASTA (omim) for
pFN21AB8396
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8396, 464 aa
1>>>pF1KB8396 464 - 464 aa - 464 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4923+/-0.000343; mu= 2.7885+/- 0.022
mean_var=329.0938+/-66.618, 0's: 0 Z-trim(125.0): 14 B-trim: 0 in 0/61
Lambda= 0.070699
statistics sampled from 47799 (47813) to 47799 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.561), width: 16
Scan time: 10.960
The best scores are: opt bits E(85289)
XP_016859657 (OMIM: 164280,164840,189960) PREDICTE ( 464) 3143 333.7 6.3e-91
NP_001280157 (OMIM: 164280,164840,189960) N-myc pr ( 464) 3143 333.7 6.3e-91
NP_005369 (OMIM: 164280,164840,189960) N-myc proto ( 464) 3143 333.7 6.3e-91
NP_001280160 (OMIM: 164280,164840,189960) N-myc pr ( 253) 1319 147.4 4.2e-35
NP_002458 (OMIM: 113970,190080) myc proto-oncogene ( 454) 468 60.9 8.5e-09
NP_001028253 (OMIM: 164850) protein L-Myc isoform ( 364) 465 60.5 9e-09
NP_001028254 (OMIM: 164850) protein L-Myc isoform ( 394) 465 60.5 9.5e-09
NP_005367 (OMIM: 164850) protein L-Myc isoform 2 [ ( 236) 338 47.3 5.4e-05
>>XP_016859657 (OMIM: 164280,164840,189960) PREDICTED: N (464 aa)
initn: 3143 init1: 3143 opt: 3143 Z-score: 1753.4 bits: 333.7 E(85289): 6.3e-91
Smith-Waterman score: 3143; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
370 380 390 400 410 420
430 440 450 460
pF1KB8 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
::::::::::::::::::::::::::::::::::::::::::::
XP_016 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
430 440 450 460
>>NP_001280157 (OMIM: 164280,164840,189960) N-myc proto- (464 aa)
initn: 3143 init1: 3143 opt: 3143 Z-score: 1753.4 bits: 333.7 E(85289): 6.3e-91
Smith-Waterman score: 3143; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
370 380 390 400 410 420
430 440 450 460
pF1KB8 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
430 440 450 460
>>NP_005369 (OMIM: 164280,164840,189960) N-myc proto-onc (464 aa)
initn: 3143 init1: 3143 opt: 3143 Z-score: 1753.4 bits: 333.7 E(85289): 6.3e-91
Smith-Waterman score: 3143; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
370 380 390 400 410 420
430 440 450 460
pF1KB8 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
::::::::::::::::::::::::::::::::::::::::::::
NP_005 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
430 440 450 460
>>NP_001280160 (OMIM: 164280,164840,189960) N-myc proto- (253 aa)
initn: 1293 init1: 1293 opt: 1319 Z-score: 751.1 bits: 147.4 E(85289): 4.2e-35
Smith-Waterman score: 1319; 85.9% identity (88.2% similar) in 255 aa overlap (214-464:4-253)
190 200 210 220 230 240
pF1KB8 AECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVA---PPRPG
: : :.. ..: : :: :::
NP_001 MRGAPGNCVGAEQALARRKRAQTVAIRGHPRPP
10 20 30
250 260 270 280 290
pF1KB8 GRQTSGGDHKALSTSGEDTL-SDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTI
: :: .: : : : : .::::::::::::::::::::::::::::::::::::
NP_001 G---PPGDTRA--ESPPDPLQSAGDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTI
40 50 60 70 80
300 310 320 330 340 350
pF1KB8 TVRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPL
90 100 110 120 130 140
360 370 380 390 400 410
pF1KB8 KSVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAK
150 160 170 180 190 200
420 430 440 450 460
pF1KB8 VVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
210 220 230 240 250
>>NP_002458 (OMIM: 113970,190080) myc proto-oncogene pro (454 aa)
initn: 791 init1: 360 opt: 468 Z-score: 278.9 bits: 60.9 E(85289): 8.5e-09
Smith-Waterman score: 876; 40.0% identity (61.9% similar) in 488 aa overlap (7-464:14-453)
10 20 30 40
pF1KB8 MPSCSTSTMPGMIC---KNPDLEFDSLQPCFYPDEDDFYFGGPDST---PPG-
.::: . .: ::..::.:: :: ::.. .. ... ::.
NP_002 MDFFRVVENQQPPATMPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
10 20 30 40 50 60
50 60 70 80 90
pF1KB8 -EDIWKKFELLPTPPLSPSRGFAEHSSEPPSWV--TEMLL--ENELWG---SPAEEDAFG
::::::::::::::::::: . : ::.: : . : .:. : : :.. .
NP_002 SEDIWKKFELLPTPPLSPSRRSGLCS---PSYVAVTPFSLRGDNDGGGGSFSTADQLEMV
70 80 90 100 110
100 110 120 130 140
pF1KB8 LGGLGGLTPN------P--------VILQDCMWSGFSAREKLERAVSEKLQHGRGPPTAG
::: : : .:.:::::::::: :: ::::: :.
NP_002 TELLGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKL---VSEKL--------AS
120 130 140 150 160
150 160 170 180 190 200
pF1KB8 STAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELAHPAAECVDPAVVFPFPVNKREPAP
: .:. .:: :::. . ... .:. :.::.::.::::.:.: .:
NP_002 YQAARKDSGSPNPA-RGHS----VCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSS-SP
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB8 VPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPGGRQTSGGDHKALSTSGEDTLSDSD
: .. : .:. : . ... ..: . :.: : : . :.
NP_002 KSCASQDSSAFSPS--SDSLLSSTESSPQ-GSPEP------------LVLHEETPPTTSS
230 240 250 260
270 280 290 300 310 320
pF1KB8 DEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTITVRPKNAALGPGRAQSSELILKRCL
: ..:.::::: ::::.::::.. .. . . : .: : .. : :.::::
NP_002 DSEEEQEDEEE-IDVVSVEKRQAPGKRSESGS------P--SAGGHSKPPHSPLVLKRCH
270 280 290 300 310
330 340 350 360 370 380
pF1KB8 PIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLKSVIPPKAKSLSPRNSDSEDSERRR
.::::::: : .. .: : :..: . : : :.. : . : :::.::.:.. .::
NP_002 VSTHQHNYAAP-PSTR-KDYPAAKRVKLD-SVRVLRQ-ISNNRKCTSPRSSDTEENVKRR
320 330 340 350 360 370
390 400 410 420 430 440
pF1KB8 NHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEK
.::.:::::::.:. ::..:::..::: .:::: ::::::::: :. :.::::..:. :.
NP_002 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE
380 390 400 410 420 430
450 460
pF1KB8 EKLQARQQQLLKKIEHAR-TC
. :. :..:: .:.:. : .:
NP_002 DLLRKRREQLKHKLEQLRNSCA
440 450
>>NP_001028253 (OMIM: 164850) protein L-Myc isoform 1 [H (364 aa)
initn: 695 init1: 314 opt: 465 Z-score: 278.4 bits: 60.5 E(85289): 9e-09
Smith-Waterman score: 624; 37.0% identity (53.2% similar) in 468 aa overlap (19-460:1-360)
10 20 30 40 50
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDED---DFYFGGPDSTPPGEDIWKKFELLP
...:: : :: : : ::: :: :.:::::::::.:
NP_001 MDYDSYQHYFY-DYDCGEDFY----RSTAPSEDIWKKFELVP
10 20 30
60 70 80 90 100 110
pF1KB8 TPPLSPSRGFAEHSSEPPSWVTEMLLENELW-GSPAEEDAFGLGGLGGLTPN--PVILQD
.:: :: :.. ...: . : : :. . ..: . : : : .: .:
NP_001 SPPTSPPWGLGPGAGDPAPGIGP----PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 CMWSGFSAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAA
::::::::::.::::::..: .::: : ::. :.:
NP_001 CMWSGFSARERLERAVSDRL--------------APGA----P--RGNPPKASA------
100 110 120
180 190 200 210 220 230
pF1KB8 LPAELAHPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGV
: .:. :.. . :.:::: : : :
NP_001 --------APDCT-PSL--------EAGNPAPAAPC-----------------PLGEP--
130 140 150
240 250 260 270 280 290
pF1KB8 APPRPGGRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAV
:. . :: .. ::: :.:::::::::::.: . : :
NP_001 ---------------KTQACSGSESPSDS---------ENEEIDVVTVEKRQSLGIRKPV
160 170 180
300 310 320 330 340
pF1KB8 TTFTITVRPKNAALGPGRAQSSELILKRC-LPIHQQ-HNYAA--PSPYVESEDAP---PQ
: :::: : : .:. . :::: ::::: : .:.: ::
NP_001 T---ITVRAD--PLDP--------CMKHFHISIHQQQHNYAARFPPESCSQEEASERGPQ
190 200 210 220 230
350 360 370 380 390
pF1KB8 KKI--KSEASPRPLKS----VIPPK-----AKSLSPR--NSDSEDSERRRNHNILERQRR
... .. :. . . : :: :.: :. .::.:: .:.:::.:::.::
NP_001 EEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHPKPVSSDTEDVTKRKNHNFLERKRR
240 250 260 270 280 290
400 410 420 430 440 450
pF1KB8 NDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQL
::::: ::.:::.:: :.. :: :::::.:: ::...: . :... ::..:. :::::
NP_001 NDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYLQALVGAEKRMATEKRQLRCRQQQL
300 310 320 330 340 350
460
pF1KB8 LKKIEHARTC
:.: .
NP_001 QKRIAYLTGY
360
>>NP_001028254 (OMIM: 164850) protein L-Myc isoform 3 [H (394 aa)
initn: 695 init1: 314 opt: 465 Z-score: 278.0 bits: 60.5 E(85289): 9.5e-09
Smith-Waterman score: 633; 36.3% identity (52.7% similar) in 476 aa overlap (11-460:23-390)
10 20 30 40
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDED---DFYFGGPDSTPP
: .. :...:: : :: : : ::: :: :
NP_001 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFY-DYDCGEDFY----RSTAP
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 GEDIWKKFELLPTPPLSPSRGFAEHSSEPPSWVTEMLLENELW-GSPAEEDAFGLGGLGG
.:::::::::.:.:: :: :.. ...: . : : :. . ..: . : :
NP_001 SEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP----PEPWPGGCTGDEAESRGHSKG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 LTPN--PVILQDCMWSGFSAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGH
: .: .:::::::::::.::::::..: .::: ..:
NP_001 WGRNYASIIRRDCMWSGFSARERLERAVSDRL--------------APGAPRGNP-----
120 130 140 150
170 180 190 200 210 220
pF1KB8 GGAAGAGRAGAALPAELAHPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASG
: : : .:. :.. . :.::::
NP_001 -------------PKASAAP--DCT-PSL--------EAGNPAPAAPC------------
160 170
230 240 250 260 270 280
pF1KB8 AGIAAPAGAPGVAPPRPGGRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTV
: : : :. . :: .. ::: :.::::::::
NP_001 -----PLGEP-----------------KTQACSGSESPSDS---------ENEEIDVVTV
180 190 200
290 300 310 320 330
pF1KB8 EKRRSSSNTKAVTTFTITVRPKNAALGPGRAQSSELILKRC-LPIHQQ-HNYAA--PSPY
:::.: . : :: :::: : : .:. . :::: ::::: :
NP_001 EKRQSLGIRKPVT---ITVRAD--PLDP--------CMKHFHISIHQQQHNYAARFPPES
210 220 230 240 250
340 350 360 370 380
pF1KB8 VESEDAP---PQKKI--KSEASPRPLKS----VIPPK-----AKSLSPR--NSDSEDSER
.:.: ::... .. :. . . : :: :.: :. .::.:: .
NP_001 CSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHPKPVSSDTEDVTK
260 270 280 290 300 310
390 400 410 420 430 440
pF1KB8 RRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLL
:.:::.:::.::::::: ::.:::.:: :.. :: :::::.:: ::...: . :...
NP_001 RKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYLQALVGAEKRMAT
320 330 340 350 360 370
450 460
pF1KB8 EKEKLQARQQQLLKKIEHARTC
::..:. ::::: :.: .
NP_001 EKRQLRCRQQQLQKRIAYLTGY
380 390
>>NP_005367 (OMIM: 164850) protein L-Myc isoform 2 [Homo (236 aa)
initn: 281 init1: 149 opt: 338 Z-score: 210.7 bits: 47.3 E(85289): 5.4e-05
Smith-Waterman score: 363; 35.7% identity (53.1% similar) in 241 aa overlap (11-240:23-236)
10 20 30 40
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDED---DFYFGGPDSTPP
: .. :...:: : :: : : ::: :: :
NP_005 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFY-DYDCGEDFY----RSTAP
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 GEDIWKKFELLPTPPLSPSRGFAEHSSEPPSWVTEMLLENELW-GSPAEEDAFGLGGLGG
.:::::::::.:.:: :: :.. ...: . : : :. . ..: . : :
NP_005 SEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP----PEPWPGGCTGDEAESRGHSKG
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 LTPN--PVILQDCMWSGFSAREKLERAVSEKLQHG--RGPPTAGSTAQ--SPGAGAASPA
: .: .:::::::::::.::::::..: : :: : .:.: .:. :..::
NP_005 WGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPA
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 GRGHGGAAGAGRAGAALPAELAHPAAECVDPAVVFPFPVNKREPAPVPAAPASA-PAAGP
: : :..: .. . . : .: : : .: . : :
NP_005 --------------PAAPCPLGEPKTQACSGSES-PSDSGKDLPEPSKRGPPHGWPKLCP
180 190 200 210
220 230 240 250 260 270
pF1KB8 AVASGAGIAAPAGAPGVAPPRPGGRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEI
. :: : . : : .:: :
NP_005 CLRSGIG---SSQALGPSPPLFG
220 230
464 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:33:06 2016 done: Fri Nov 4 12:33:08 2016
Total Scan time: 10.960 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]