Result of FASTA (omim) for
pFN21AB7630
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7630, 375 aa
1>>>pF1KB7630 375 - 375 aa - 375 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3004+/-0.000315; mu= 12.8148+/- 0.020
mean_var=98.2636+/-20.369, 0's: 0 Z-trim(118.5): 34 B-trim: 0 in 0/50
Lambda= 0.129383
statistics sampled from 31417 (31451) to 31417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.369), width: 16
Scan time: 8.340
The best scores are: opt bits E(85289)
NP_003884 (OMIM: 603451) LIM domain-binding protei ( 375) 2591 493.6 3e-139
NP_001106878 (OMIM: 603451) LIM domain-binding pro ( 411) 2591 493.7 3.2e-139
NP_001308541 (OMIM: 603451) LIM domain-binding pro ( 409) 2562 488.3 1.4e-137
XP_016872356 (OMIM: 603451) PREDICTED: LIM domain- ( 339) 2083 398.8 9.7e-111
XP_016872357 (OMIM: 603451) PREDICTED: LIM domain- ( 337) 2072 396.7 4e-110
NP_001281 (OMIM: 603450) LIM domain-binding protei ( 373) 1984 380.3 3.8e-105
XP_005248254 (OMIM: 603450) PREDICTED: LIM domain- ( 372) 1967 377.2 3.4e-104
NP_001291363 (OMIM: 603450) LIM domain-binding pro ( 371) 1955 374.9 1.6e-103
XP_016864302 (OMIM: 603450) PREDICTED: LIM domain- ( 370) 1938 371.8 1.5e-102
XP_006714038 (OMIM: 603450) PREDICTED: LIM domain- ( 411) 1867 358.5 1.5e-98
XP_016864307 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1862 357.5 2.5e-98
XP_006714039 (OMIM: 603450) PREDICTED: LIM domain- ( 410) 1850 355.4 1.4e-97
XP_006714040 (OMIM: 603450) PREDICTED: LIM domain- ( 409) 1838 353.1 6.6e-97
XP_016864301 (OMIM: 603450) PREDICTED: LIM domain- ( 408) 1821 349.9 5.9e-96
XP_011512207 (OMIM: 603450) PREDICTED: LIM domain- ( 298) 1639 315.9 7.7e-86
XP_016872358 (OMIM: 603451) PREDICTED: LIM domain- ( 242) 1597 308.0 1.5e-83
NP_001124306 (OMIM: 603450) LIM domain-binding pro ( 331) 1539 297.2 3.5e-80
NP_001291364 (OMIM: 603450) LIM domain-binding pro ( 313) 1526 294.8 1.8e-79
XP_016864306 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1522 294.1 3.1e-79
XP_005248258 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1522 294.1 3.1e-79
XP_016864309 (OMIM: 603450) PREDICTED: LIM domain- ( 311) 1514 292.6 8.4e-79
XP_005248259 (OMIM: 603450) PREDICTED: LIM domain- ( 329) 1510 291.8 1.5e-78
XP_016864308 (OMIM: 603450) PREDICTED: LIM domain- ( 312) 1509 291.6 1.6e-78
XP_016864310 (OMIM: 603450) PREDICTED: LIM domain- ( 310) 1497 289.4 7.6e-78
XP_006714041 (OMIM: 603450) PREDICTED: LIM domain- ( 369) 1422 275.4 1.4e-73
XP_006714042 (OMIM: 603450) PREDICTED: LIM domain- ( 369) 1422 275.4 1.4e-73
XP_016864311 (OMIM: 603450) PREDICTED: LIM domain- ( 249) 1416 274.2 2.3e-73
XP_006714045 (OMIM: 603450) PREDICTED: LIM domain- ( 351) 1409 273.0 7.4e-73
XP_006714043 (OMIM: 603450) PREDICTED: LIM domain- ( 368) 1405 272.3 1.3e-72
XP_006714046 (OMIM: 603450) PREDICTED: LIM domain- ( 349) 1397 270.8 3.5e-72
XP_006714044 (OMIM: 603450) PREDICTED: LIM domain- ( 367) 1393 270.0 6.1e-72
XP_016864304 (OMIM: 603450) PREDICTED: LIM domain- ( 350) 1392 269.8 6.7e-72
XP_016864305 (OMIM: 603450) PREDICTED: LIM domain- ( 348) 1380 267.6 3.1e-71
XP_016864303 (OMIM: 603450) PREDICTED: LIM domain- ( 366) 1376 266.8 5.5e-71
>>NP_003884 (OMIM: 603451) LIM domain-binding protein 1 (375 aa)
initn: 2591 init1: 2591 opt: 2591 Z-score: 2621.0 bits: 493.6 E(85289): 3e-139
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
310 320 330 340 350 360
370
pF1KB7 SQESKSENPTSQASQ
:::::::::::::::
NP_003 SQESKSENPTSQASQ
370
>>NP_001106878 (OMIM: 603451) LIM domain-binding protein (411 aa)
initn: 2591 init1: 2591 opt: 2591 Z-score: 2620.4 bits: 493.7 E(85289): 3.2e-139
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:37-411)
10 20 30
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
::::::::::::::::::::::::::::::
NP_001 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
310 320 330 340 350 360
340 350 360 370
pF1KB7 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
370 380 390 400 410
>>NP_001308541 (OMIM: 603451) LIM domain-binding protein (409 aa)
initn: 2068 init1: 2068 opt: 2562 Z-score: 2591.2 bits: 488.3 E(85289): 1.4e-137
Smith-Waterman score: 2562; 99.5% identity (99.5% similar) in 375 aa overlap (1-375:37-409)
10 20 30
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
::::::::::::::::::::::::::::::
NP_001 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
NP_001 MSSGGGNTNNSNSKKKSPASTFALSSQ--DVMVVGEPTLMGGEFGDEDERLITRLENTQF
310 320 330 340 350 360
340 350 360 370
pF1KB7 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
370 380 390 400
>>XP_016872356 (OMIM: 603451) PREDICTED: LIM domain-bind (339 aa)
initn: 2083 init1: 2083 opt: 2083 Z-score: 2109.1 bits: 398.8 E(85289): 9.7e-111
Smith-Waterman score: 2083; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:37-335)
10 20 30
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
::::::::::::::::::::::::::::::
XP_016 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
:::::::::::::::::::::::::::::
XP_016 MSSGGGNTNNSNSKKKSPASTFALSSQVPIWPA
310 320 330
>>XP_016872357 (OMIM: 603451) PREDICTED: LIM domain-bind (337 aa)
initn: 2122 init1: 2072 opt: 2072 Z-score: 2098.1 bits: 396.7 E(85289): 4e-110
Smith-Waterman score: 2072; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:37-334)
10 20 30
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
::::::::::::::::::::::::::::::
XP_016 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
:::::::::::::::::::::::::::.
XP_016 MSSGGGNTNNSNSKKKSPASTFALSSQIWPA
310 320 330
>>NP_001281 (OMIM: 603450) LIM domain-binding protein 2 (373 aa)
initn: 1489 init1: 1468 opt: 1984 Z-score: 2008.7 bits: 380.3 E(85289): 3.8e-105
Smith-Waterman score: 1984; 77.1% identity (91.3% similar) in 367 aa overlap (10-375:8-373)
10 20 30 40 50 60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
:.: . : ::::: : .:::.:.:::::. ::. ::::::::.::
NP_001 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
:::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
NP_001 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
.:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
NP_001 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
:::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
NP_001 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
::::::::::::::: .:::::: : .:: ::.:.:.:...::::. :....::::::
NP_001 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
NP_001 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
300 310 320 330 340 350
360 370
pF1KB7 SSQESKSENPTSQASQ
..::.::::: ::::
NP_001 ATQETKSENPPPQASQ
360 370
>>XP_005248254 (OMIM: 603450) PREDICTED: LIM domain-bind (372 aa)
initn: 1917 init1: 1917 opt: 1967 Z-score: 1991.5 bits: 377.2 E(85289): 3.4e-104
Smith-Waterman score: 1967; 76.8% identity (91.0% similar) in 367 aa overlap (10-375:8-372)
10 20 30 40 50 60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
:.: . : ::::: : .:::.:.:::::. ::. ::::::::.::
XP_005 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
:::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
XP_005 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
.:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
XP_005 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
:::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
XP_005 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
::::::::: ::::: .:::::: : .:: ::.:.:.:...::::. :....::::::
XP_005 KWQRMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
XP_005 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
300 310 320 330 340 350
360 370
pF1KB7 SSQESKSENPTSQASQ
..::.::::: ::::
XP_005 ATQETKSENPPPQASQ
360 370
>>NP_001291363 (OMIM: 603450) LIM domain-binding protein (371 aa)
initn: 1489 init1: 1468 opt: 1955 Z-score: 1979.4 bits: 374.9 E(85289): 1.6e-103
Smith-Waterman score: 1955; 76.6% identity (90.7% similar) in 367 aa overlap (10-375:8-371)
10 20 30 40 50 60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
:.: . : ::::: : .:::.:.:::::. ::. ::::::::.::
NP_001 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
:::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
NP_001 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
.:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
NP_001 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
:::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
NP_001 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
::::::::::::::: .:::::: : .:: ::.:.:.:...::::. :....::::
NP_001 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
NP_001 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
300 310 320 330 340 350
360 370
pF1KB7 SSQESKSENPTSQASQ
..::.::::: ::::
NP_001 ATQETKSENPPPQASQ
360 370
>>XP_016864302 (OMIM: 603450) PREDICTED: LIM domain-bind (370 aa)
initn: 1440 init1: 1440 opt: 1938 Z-score: 1962.3 bits: 371.8 E(85289): 1.5e-102
Smith-Waterman score: 1938; 76.3% identity (90.5% similar) in 367 aa overlap (10-375:8-370)
10 20 30 40 50 60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
:.: . : ::::: : .:::.:.:::::. ::. ::::::::.::
XP_016 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
:::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
XP_016 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
.:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
XP_016 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
:::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
XP_016 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
::::::::: ::::: .:::::: : .:: ::.:.:.:...::::. :....::::
XP_016 KWQRMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
XP_016 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
300 310 320 330 340 350
360 370
pF1KB7 SSQESKSENPTSQASQ
..::.::::: ::::
XP_016 ATQETKSENPPPQASQ
360 370
>>XP_006714038 (OMIM: 603450) PREDICTED: LIM domain-bind (411 aa)
initn: 1477 init1: 1352 opt: 1867 Z-score: 1890.0 bits: 358.5 E(85289): 1.5e-98
Smith-Waterman score: 1902; 70.1% identity (83.0% similar) in 405 aa overlap (10-375:8-411)
10 20 30 40
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEE---------C--
:.: . : ::::: : .:::.:.:::::. ::. :
XP_006 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDLYMASENQLCHI
10 20 30 40 50
50 60 70 80
pF1KB7 ---------------------------DNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT
::::::::.:::::::: ::..:::::::::::
XP_006 IGNYDDDDDDDDDTLILDSISKLNNDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYT
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB7 IGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCV
:::::::::: ..::::.:.:::.::: ::..:.. ...:::: .:::::::::::.::.
XP_006 IGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCT
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB7 EGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNS
:::: ::: :::.::::::::.:::.:::.:::::::::::::.:::::::::: ::.:
XP_006 EGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNF
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 TLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRK
::::::::::::::::::::::::.:::::::::::::::::::::::::::: .::::
XP_006 TLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRK
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB7 RKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERL
:: : .:: ::.:.:.:...::::. :....::::::::::::::::::::::::::::
XP_006 RKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERL
300 310 320 330 340 350
330 340 350 360 370
pF1KB7 ITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
::::::::.:::::.:::..:::::::: :::::::::..::.::::: ::::
XP_006 ITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ
360 370 380 390 400 410
375 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:31:40 2016 done: Fri Nov 4 12:31:42 2016
Total Scan time: 8.340 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]