Result of FASTA (ccds) for
pFN21AB8355
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8355, 651 aa
1>>>pF1KB8355 651 - 651 aa - 651 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.0822+/-0.00104; mu= -18.3461+/- 0.063
mean_var=496.0282+/-104.011, 0's: 0 Z-trim(117.1): 16 B-trim: 418 in 1/54
Lambda= 0.057587
statistics sampled from 17740 (17755) to 17740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.545), width: 16
Scan time: 4.350
The best scores are: opt bits E(32554)
CCDS4421.1 DBN1 gene_id:1627|Hs108|chr5 ( 651) 4374 377.7 2.7e-104
CCDS4420.1 DBN1 gene_id:1627|Hs108|chr5 ( 649) 4149 359.0 1.1e-98
CCDS47579.1 DBNL gene_id:28988|Hs108|chr7 ( 439) 629 66.5 8.9e-11
>>CCDS4421.1 DBN1 gene_id:1627|Hs108|chr5 (651 aa)
initn: 4374 init1: 4374 opt: 4374 Z-score: 1985.9 bits: 377.7 E(32554): 2.7e-104
Smith-Waterman score: 4374; 99.7% identity (99.8% similar) in 651 aa overlap (1-651:1-651)
10 20 30 40 50 60
pF1KB8 MAGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ENQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ENQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SSVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QFWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QFWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QQTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QQTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RVASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RVASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 VTSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 EDLMFMESAEQAVLAAPVEPATADATEVHDAADTIETDTATADTTVANNVPPAATSLIDL
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS44 EDLMFMESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 WPGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WPGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 PPATFCDPEEVEGEPLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYF
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PPATFCDPEEVEGESLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYF
550 560 570 580 590 600
610 620 630 640 650
pF1KB8 SQSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SQSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
610 620 630 640 650
>>CCDS4420.1 DBN1 gene_id:1627|Hs108|chr5 (649 aa)
initn: 4149 init1: 4149 opt: 4149 Z-score: 1884.9 bits: 359.0 E(32554): 1.1e-98
Smith-Waterman score: 4149; 99.7% identity (99.8% similar) in 620 aa overlap (32-651:30-649)
10 20 30 40 50 60
pF1KB8 AGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHFE
::::::::::::::::::::::::::::::
CCDS44 MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 NQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNAS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 SVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 FWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 QTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQER
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB8 VASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEV
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB8 TSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB8 DLMFMESAEQAVLAAPVEPATADATEVHDAADTIETDTATADTTVANNVPPAATSLIDLW
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS44 DLMFMESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDLW
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB8 PGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB8 PATFCDPEEVEGEPLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYFS
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PATFCDPEEVEGESLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYFS
540 550 560 570 580 590
610 620 630 640 650
pF1KB8 QSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
600 610 620 630 640
>>CCDS47579.1 DBNL gene_id:28988|Hs108|chr7 (439 aa)
initn: 695 init1: 595 opt: 629 Z-score: 306.9 bits: 66.5 E(32554): 8.9e-11
Smith-Waterman score: 686; 34.7% identity (64.0% similar) in 369 aa overlap (32-387:29-370)
10 20 30 40 50 60
pF1KB8 AGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHFE
::.::: .:.:...:..:::::.:. ...
CCDS47 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELN
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 NQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNAS
. ::::.:: ::: ...:::.:::::.:: : :.:: ::::::. .: :..:. : .::
CCDS47 SGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINAR
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 SVEDIDAGAIGQRLSNGLARLSSPVLHRLRLR-EDENAE-PVGTTYQKTDAAVEMKRINR
. ::.. : ..... : .. .:. : .: . . :::..::::.:. :.::...
CCDS47 AEEDVEPECIMEKVAK--ASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 EQFWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRR
..:: .:.:::: :. ::...: . . ..:::: :.: .: .::.::.:. . . :
CCDS47 DSFWAKAEKEEENRRLEEKRRAEEAQRQLEQERRERELREAARREQRYQEQGGEASPQSR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KQQTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQ
. ..: . . .:.:. : . .:: : .:::.:::.
CCDS47 TWE-----------QQQEVVSRNRNEQGSTCASLQESAV------------HPREIFKQK
240 250 260 270
300 310 320 330 340 350
pF1KB8 ERVASASAGSCDVP----SPFNHRPGSHLDSHRRMAPTPIPTRS----PSDSSTASTPVA
::. :... : : ::: .. .. ..: :. .: :.. . :::
CCDS47 ERAMSTTSISSPQPGKLRSPFLQKQLTQPETHFGREPAAAISRPRADLPAEEPAPSTPPC
280 290 300 310 320 330
360 370 380 390 400
pF1KB8 EQIERALDEVTSSQPPP---LPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQ
. .: .:.. .:: . :: .:. : .:
CCDS47 --LVQAEEEAVYEEPPEQETFYEQPPLVQQQGAGSEHIDHHIQGQGLSGQGLCARALYDY
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB8 AQAPPRGPGSPAEDLMFMESAEQAVLAAPVEPATADATEVHDAADTIETDTATADTTVAN
CCDS47 QAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELIE
400 410 420 430
651 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:02:54 2016 done: Fri Nov 4 12:02:55 2016
Total Scan time: 4.350 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]