Result of FASTA (omim) for
pFN21AB8346
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8346, 127 aa
1>>>pF1KB8346 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6527+/-0.00028; mu= 9.8713+/- 0.018
mean_var=82.8738+/-16.810, 0's: 0 Z-trim(119.3): 10 B-trim: 1697 in 1/51
Lambda= 0.140885
statistics sampled from 33156 (33166) to 33156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.389), width: 16
Scan time: 4.490
The best scores are: opt bits E(85289)
NP_001028284 (OMIM: 605604) polyadenylate-binding ( 127) 863 184.0 5.6e-47
XP_016865012 (OMIM: 605604) PREDICTED: polyadenyla ( 127) 863 184.0 5.6e-47
NP_057564 (OMIM: 605604) polyadenylate-binding pro ( 127) 863 184.0 5.6e-47
XP_016865011 (OMIM: 605604) PREDICTED: polyadenyla ( 127) 863 184.0 5.6e-47
XP_011541730 (OMIM: 605604) PREDICTED: polyadenyla ( 127) 863 184.0 5.6e-47
NP_065192 (OMIM: 611018) polyadenylate-binding pro ( 123) 531 116.5 1.1e-26
XP_011531145 (OMIM: 611018) PREDICTED: polyadenyla ( 123) 531 116.5 1.1e-26
XP_005264368 (OMIM: 611018) PREDICTED: polyadenyla ( 123) 531 116.5 1.1e-26
XP_005264367 (OMIM: 611018) PREDICTED: polyadenyla ( 123) 531 116.5 1.1e-26
XP_011531144 (OMIM: 611018) PREDICTED: polyadenyla ( 144) 531 116.6 1.3e-26
>>NP_001028284 (OMIM: 605604) polyadenylate-binding prot (127 aa)
initn: 863 init1: 863 opt: 863 Z-score: 964.4 bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
70 80 90 100 110 120
pF1KB8 GVKYGNI
:::::::
NP_001 GVKYGNI
>>XP_016865012 (OMIM: 605604) PREDICTED: polyadenylate-b (127 aa)
initn: 863 init1: 863 opt: 863 Z-score: 964.4 bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
70 80 90 100 110 120
pF1KB8 GVKYGNI
:::::::
XP_016 GVKYGNI
>>NP_057564 (OMIM: 605604) polyadenylate-binding protein (127 aa)
initn: 863 init1: 863 opt: 863 Z-score: 964.4 bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_057 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
70 80 90 100 110 120
pF1KB8 GVKYGNI
:::::::
NP_057 GVKYGNI
>>XP_016865011 (OMIM: 605604) PREDICTED: polyadenylate-b (127 aa)
initn: 863 init1: 863 opt: 863 Z-score: 964.4 bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
70 80 90 100 110 120
pF1KB8 GVKYGNI
:::::::
XP_016 GVKYGNI
>>XP_011541730 (OMIM: 605604) PREDICTED: polyadenylate-b (127 aa)
initn: 863 init1: 863 opt: 863 Z-score: 964.4 bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_011 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
70 80 90 100 110 120
pF1KB8 GVKYGNI
:::::::
XP_011 GVKYGNI
>>NP_065192 (OMIM: 611018) polyadenylate-binding protein (123 aa)
initn: 287 init1: 268 opt: 531 Z-score: 599.9 bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)
10 20 30 40 50
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
NP_065 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
NP_065 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
60 70 80 90 100 110
120
pF1KB8 PGVKYGNI
:: ::
NP_065 PGEKY
120
>>XP_011531145 (OMIM: 611018) PREDICTED: polyadenylate-b (123 aa)
initn: 287 init1: 268 opt: 531 Z-score: 599.9 bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)
10 20 30 40 50
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
XP_011 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
XP_011 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
60 70 80 90 100 110
120
pF1KB8 PGVKYGNI
:: ::
XP_011 PGEKY
120
>>XP_005264368 (OMIM: 611018) PREDICTED: polyadenylate-b (123 aa)
initn: 287 init1: 268 opt: 531 Z-score: 599.9 bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)
10 20 30 40 50
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
XP_005 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
XP_005 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
60 70 80 90 100 110
120
pF1KB8 PGVKYGNI
:: ::
XP_005 PGEKY
120
>>XP_005264367 (OMIM: 611018) PREDICTED: polyadenylate-b (123 aa)
initn: 287 init1: 268 opt: 531 Z-score: 599.9 bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)
10 20 30 40 50
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
XP_005 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
XP_005 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
60 70 80 90 100 110
120
pF1KB8 PGVKYGNI
:: ::
XP_005 PGEKY
120
>>XP_011531144 (OMIM: 611018) PREDICTED: polyadenylate-b (144 aa)
initn: 290 init1: 268 opt: 531 Z-score: 599.0 bits: 116.6 E(85289): 1.3e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:22-144)
10 20 30
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWME
:. . ..::::. . :: ..::. : .::::::::::
XP_011 MPHLPGRRSPLLLCLAVRSIIMNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWME
10 20 30 40 50
40 50 60 70 80 90
pF1KB8 NEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISE
:::.::::.:::: :..:..:::::::.::.. .::::.:::::.: :.:.:.: : .::
XP_011 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSE
60 70 80 90 100 110
100 110 120
pF1KB8 GSSLEDLVVKSNLNPNAKEFVPGVKYGNI
: . ::.. ::::::.::::.:: ::
XP_011 GHDSEDILSKSNLNPDAKEFIPGEKY
120 130 140
127 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:58:19 2016 done: Fri Nov 4 11:58:20 2016
Total Scan time: 4.490 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]