Result of FASTA (omim) for
pFN21AB8340
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8340, 73 aa
1>>>pF1KB8340 73 - 73 aa - 73 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2893+/-0.000241; mu= 12.7667+/- 0.015
mean_var=63.8286+/-13.176, 0's: 0 Z-trim(121.0): 125 B-trim: 26 in 1/54
Lambda= 0.160534
statistics sampled from 36860 (37036) to 36860 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.434), width: 16
Scan time: 4.030
The best scores are: opt bits E(85289)
NP_631958 (OMIM: 607275) homeodomain-only protein ( 73) 480 118.4 1.1e-27
XP_016864222 (OMIM: 607275) PREDICTED: homeodomain ( 73) 480 118.4 1.1e-27
XP_016864218 (OMIM: 607275) PREDICTED: homeodomain ( 73) 480 118.4 1.1e-27
XP_016864219 (OMIM: 607275) PREDICTED: homeodomain ( 73) 480 118.4 1.1e-27
XP_016864220 (OMIM: 607275) PREDICTED: homeodomain ( 73) 480 118.4 1.1e-27
XP_016864221 (OMIM: 607275) PREDICTED: homeodomain ( 73) 480 118.4 1.1e-27
NP_001138931 (OMIM: 607275) homeodomain-only prote ( 73) 480 118.4 1.1e-27
XP_016864223 (OMIM: 607275) PREDICTED: homeodomain ( 73) 480 118.4 1.1e-27
NP_631957 (OMIM: 607275) homeodomain-only protein ( 73) 480 118.4 1.1e-27
XP_016864217 (OMIM: 607275) PREDICTED: homeodomain ( 88) 480 118.4 1.2e-27
NP_115884 (OMIM: 607275) homeodomain-only protein ( 91) 480 118.5 1.2e-27
XP_006714115 (OMIM: 607275) PREDICTED: homeodomain ( 111) 304 77.8 2.6e-15
NP_001138932 (OMIM: 607275) homeodomain-only prote ( 112) 304 77.8 2.7e-15
NP_776248 (OMIM: 138890,602471) homeobox protein g ( 257) 141 40.4 0.0011
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 141 40.5 0.0012
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 141 40.5 0.0012
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 141 40.6 0.0015
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 141 40.6 0.0015
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 141 40.6 0.0015
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 141 40.6 0.0015
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 141 40.6 0.0015
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436) 141 40.7 0.0016
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 141 40.7 0.0016
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 141 40.7 0.0016
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436) 141 40.7 0.0016
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 130 37.9 0.0066
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 130 37.9 0.0066
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 130 37.9 0.0066
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 130 37.9 0.0071
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 130 38.0 0.0074
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 130 38.0 0.0074
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 130 38.0 0.0074
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 130 38.0 0.0075
NP_006184 (OMIM: 125853,167413,612225,612227) pair ( 343) 130 38.0 0.0078
XP_011514578 (OMIM: 125853,167413,612225,612227) P ( 351) 130 38.0 0.0079
>>NP_631958 (OMIM: 607275) homeodomain-only protein isof (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
NP_631 SEGLPSECRSVTD
70
>>XP_016864222 (OMIM: 607275) PREDICTED: homeodomain-onl (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
XP_016 SEGLPSECRSVTD
70
>>XP_016864218 (OMIM: 607275) PREDICTED: homeodomain-onl (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
XP_016 SEGLPSECRSVTD
70
>>XP_016864219 (OMIM: 607275) PREDICTED: homeodomain-onl (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
XP_016 SEGLPSECRSVTD
70
>>XP_016864220 (OMIM: 607275) PREDICTED: homeodomain-onl (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
XP_016 SEGLPSECRSVTD
70
>>XP_016864221 (OMIM: 607275) PREDICTED: homeodomain-onl (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
XP_016 SEGLPSECRSVTD
70
>>NP_001138931 (OMIM: 607275) homeodomain-only protein i (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
NP_001 SEGLPSECRSVTD
70
>>XP_016864223 (OMIM: 607275) PREDICTED: homeodomain-onl (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
XP_016 SEGLPSECRSVTD
70
>>NP_631957 (OMIM: 607275) homeodomain-only protein isof (73 aa)
initn: 488 init1: 480 opt: 480 Z-score: 618.3 bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
10 20 30 40 50 60
70
pF1KB8 SEGLPSECRSVID
::::::::::: :
NP_631 SEGLPSECRSVTD
70
>>XP_016864217 (OMIM: 607275) PREDICTED: homeodomain-onl (88 aa)
initn: 488 init1: 480 opt: 480 Z-score: 617.3 bits: 118.4 E(85289): 1.2e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:16-88)
10 20 30 40
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEE
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRQHLTGNSLKRAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEE
10 20 30 40 50 60
50 60 70
pF1KB8 ETQKWFKQRLAKWRRSEGLPSECRSVID
:::::::::::::::::::::::::: :
XP_016 ETQKWFKQRLAKWRRSEGLPSECRSVTD
70 80
73 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:54:48 2016 done: Fri Nov 4 11:54:48 2016
Total Scan time: 4.030 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]