Result of FASTA (omim) for
pFN21AB8334
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8334, 188 aa
1>>>pF1KB8334 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5045+/-0.000292; mu= 9.5071+/- 0.018
mean_var=134.3000+/-27.021, 0's: 0 Z-trim(121.3): 23 B-trim: 0 in 0/58
Lambda= 0.110672
statistics sampled from 37785 (37810) to 37785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.443), width: 16
Scan time: 5.020
The best scores are: opt bits E(85289)
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1291 216.3 2.3e-56
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 1161 195.5 4.2e-50
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1087 183.7 1.5e-46
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1087 183.7 1.5e-46
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1087 183.7 1.5e-46
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 1087 183.7 1.5e-46
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214) 1082 183.0 2.9e-46
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223) 1082 183.0 2.9e-46
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 1014 172.1 4.8e-43
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 1014 172.1 4.8e-43
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 986 167.6 1.1e-41
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 986 167.6 1.1e-41
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229) 953 162.4 4.8e-40
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170) 947 161.3 7.5e-40
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 886 151.7 7.8e-37
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129) 614 108.0 6.2e-24
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153) 562 99.8 2.2e-21
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 223 46.0 8.3e-05
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 223 46.2 0.0001
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 223 46.2 0.0001
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 221 46.1 0.00019
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 221 46.1 0.00019
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172) 196 41.4 0.00094
>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b (188 aa)
initn: 1291 init1: 1291 opt: 1291 Z-score: 1132.8 bits: 216.3 E(85289): 2.3e-56
Smith-Waterman score: 1291; 99.5% identity (99.5% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
NP_783 SDPEEDDE
>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens] (188 aa)
initn: 1161 init1: 1161 opt: 1161 Z-score: 1020.6 bits: 195.5 E(85289): 4.2e-50
Smith-Waterman score: 1161; 90.4% identity (94.7% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::.:::::::::::::::::::::::::::::::::::.:::: :::::::::::::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::: :: :: :::. ::::::.::::::::::.:::::::::::: ::::::::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
: :.:::::::::::::.:::::::::::::. :::::::::::::: :::::::::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
NP_066 SDPEEDDE
>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46
Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::::.::: ::.:::::.::::::::::::..:::::::::::.:::::::::::::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::. :::::::::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
:::.::::
XP_016 SDPQEDDE
>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens] (188 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46
Smith-Waterman score: 1087; 85.1% identity (92.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::: : : :.::::.::: :.::::::::::: ::: : ::::::::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. :::::: :::::.:::::::.:::::.. ::::::.::::::: :::::::::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
NP_775 SDPEEDDE
>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46
Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::::.::: ::.:::::.::::::::::::..:::::::::::.:::::::::::::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::. :::::::::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
:::.::::
XP_011 SDPQEDDE
>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo (188 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46
Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::::.::: ::.:::::.::::::::::::..:::::::::::.:::::::::::::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::. :::::::::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
:::.::::
NP_783 SDPQEDDE
>>NP_001265626 (OMIM: 300192,300813) protein SSX2 isofor (214 aa)
initn: 1140 init1: 1080 opt: 1082 Z-score: 951.7 bits: 183.0 E(85289): 2.9e-46
Smith-Waterman score: 1229; 87.4% identity (87.4% similar) in 214 aa overlap (1-188:1-214)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSG------------------------
::::::::::::::::::::::::::::::::::::
NP_001 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
160 170 180
pF1KB8 --PKRGEHAWTHRLPERKQLVIYEEISDPEEDDE
:::::::::::: :::::::::::::::::::
NP_001 IGPKRGEHAWTHRLRERKQLVIYEEISDPEEDDE
190 200 210
>>NP_003138 (OMIM: 300192,300813) protein SSX2 isoform a (223 aa)
initn: 1137 init1: 1080 opt: 1082 Z-score: 951.5 bits: 183.0 E(85289): 2.9e-46
Smith-Waterman score: 1082; 94.0% identity (97.6% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::::::::::::::::::::::::::::::::::: ..... .:
NP_003 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB8 SDPEEDDE
NP_003 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo (188 aa)
initn: 1014 init1: 1014 opt: 1014 Z-score: 893.7 bits: 172.1 E(85289): 4.8e-43
Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
NP_005 SDPEEDDE
>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is (188 aa)
initn: 1014 init1: 1014 opt: 1014 Z-score: 893.7 bits: 172.1 E(85289): 4.8e-43
Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
XP_016 SDPEEDDE
188 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:51:33 2016 done: Fri Nov 4 11:51:34 2016
Total Scan time: 5.020 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]