(Circular) (Six-base) MAPSORT of: pFN21AB8322.seq Check: 9159 from: 1 to: 6709 pFN21AB8322 6709 bp With 182 enzymes: SgfI * February 27, 2009 14:42 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4519 278 Size: 53 83 186 936 2983 2468 Fragments arranged by size: 2983 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3428 4052 1937 Size: 1491 624 4594 Fragments arranged by size: 4594 1491 624 Acc65I G'GTAC_C Cuts at: 4030 4030 Size: 6709 AclI AA'CG_TT Cuts at: 1563 4836 5209 1563 Size: 3273 373 3063 Fragments arranged by size: 3273 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2026 3346 4772 6156 6424 1632 Size: 394 1320 1426 1384 268 1917 Fragments arranged by size: 1917 1426 1384 1320 394 268 AfeI AGC'GCT Cuts at: 2561 2666 2684 3710 2561 Size: 105 18 1026 5560 Fragments arranged by size: 5560 1026 105 18 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6512 AflIII A'CryG_T Cuts at: 1203 2529 3174 3573 3823 5608 6585 1203 Size: 1326 645 399 250 1785 977 1327 Fragments arranged by size: 1785 1327 1326 977 645 399 250 AgeI A'CCGG_T Cuts at: 5540 5540 Size: 6709 AhdI GACnn_n'nnGTC Cuts at: 2467 5438 2467 Size: 2971 3738 AleI CACnn'nnGTG Cuts at: 1166 2094 3588 3674 1166 Size: 928 1494 86 4201 Fragments arranged by size: 4201 1494 928 86 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2069 2158 1184 Size: 885 89 5735 Fragments arranged by size: 5735 885 89 AlwNI CAG_nnn'CTG Cuts at: 2827 3379 3463 3615 4452 6024 2827 Size: 552 84 152 837 1572 3512 Fragments arranged by size: 3512 1572 837 552 152 84 ApaLI G'TGCA_C Cuts at: 2350 2851 3523 3737 4766 5922 2350 Size: 501 672 214 1029 1156 3137 Fragments arranged by size: 3137 1156 1029 672 501 214 ApoI r'AATT_y Cuts at: 1493 4018 4244 4396 6505 1493 Size: 2525 226 152 2109 1697 Fragments arranged by size: 2525 2109 1697 226 152 AseI AT'TA_AT Cuts at: 160 1032 5263 160 Size: 872 4231 1606 Fragments arranged by size: 4231 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6709 AvaI C'yCGr_G Cuts at: 1870 1943 2057 2389 2404 2432 2702 2914 3011 Size: 73 114 332 15 28 270 212 97 Cuts at: 3011 4034 1870 Size: 1023 4545 Fragments arranged by size: 4545 1023 332 270 212 114 97 73 28 15 BamHI G'GATC_C Cuts at: 2394 4039 4406 2394 Size: 1645 367 4697 Fragments arranged by size: 4697 1645 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2879 2936 3878 4030 5485 Size: 325 217 627 1092 57 942 152 1455 Cuts at: 5485 618 Size: 1842 Fragments arranged by size: 1842 1455 1092 942 627 325 217 152 57 BanII G_rGCy'C Cuts at: 1391 2895 3728 4028 1391 Size: 1504 833 300 4072 Fragments arranged by size: 4072 1504 833 300 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2640 2865 928 Size: 971 741 225 4772 Fragments arranged by size: 4772 971 741 225 BbvCI CC'TCA_GC Cuts at: 3036 3036 Size: 6709 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2341 2375 3002 3036 4900 4934 1903 Size: 34 404 34 627 34 1864 34 3678 Fragments arranged by size: 3678 1864 627 404 34 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4601 5811 4601 Size: 1210 5499 BclI T'GATC_A Cuts at: 1548 1548 Size: 6709 BfrBI ATG'CAT Cuts at: 3994 3994 Size: 6709 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3897 5320 136 Size: 107 122 71 631 605 2225 1423 1525 Fragments arranged by size: 2225 1525 1423 631 605 122 107 71 BglII A'GATC_T Cuts at: 6704 6704 Size: 6709 BlpI GC'TnA_GC Cuts at: 4126 4126 Size: 6709 Bme1580I G_kGCm'C Cuts at: 1790 2354 2429 2855 2882 3527 3741 3883 4770 Size: 564 75 426 27 645 214 142 887 Cuts at: 4770 5926 1790 Size: 1156 2573 Fragments arranged by size: 2573 1156 887 645 564 426 214 142 75 27 BmgBI CAC'GTC Cuts at: 1318 2445 3177 1318 Size: 1127 732 4850 Fragments arranged by size: 4850 1127 732 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3391 4440 5398 Size: 416 53 83 399 24 1974 1049 958 Cuts at: 5398 442 Size: 1753 Fragments arranged by size: 1974 1753 1049 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6709 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2965 3270 2965 Size: 305 6404 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3836 5369 1239 Size: 2597 1533 2579 Fragments arranged by size: 2597 2579 1533 Bpu10I CC'TnA_GC Cuts at: 3036 3036 Size: 6709 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 4834 5699 5997 4834 Size: 865 298 5546 Fragments arranged by size: 5546 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2054 2284 2699 5372 882 Size: 617 555 230 415 2673 2219 Fragments arranged by size: 2673 2219 617 555 415 230 BsaAI yAC'GTr Cuts at: 493 1204 3826 4500 493 Size: 711 2622 674 2702 Fragments arranged by size: 2702 2622 711 674 BsaBI GATnn'nnATC Cuts at: 6703 6703 Size: 6709 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2919 4516 4898 5533 Size: 53 83 186 936 1386 1597 382 635 Cuts at: 5533 275 Size: 1451 Fragments arranged by size: 1597 1451 1386 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3082 5142 5540 5814 5961 6372 3082 Size: 2060 398 274 147 411 3419 Fragments arranged by size: 3419 2060 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2519 2549 2948 2978 3920 Size: 30 165 30 1116 30 399 30 942 Cuts at: 3920 3950 1178 Size: 30 3937 Fragments arranged by size: 3937 1116 942 399 165 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2861 2917 1186 Size: 1675 56 4978 Fragments arranged by size: 4978 1675 56 BseYI C'CCAG_C Cuts at: 2639 3204 3327 3414 3946 5912 6408 2639 Size: 565 123 87 532 1966 496 2940 Fragments arranged by size: 2940 1966 565 532 496 123 87 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2249 2840 3423 3818 3895 1163 Size: 573 513 591 583 395 77 3977 Fragments arranged by size: 3977 591 583 573 513 395 77 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2313 4159 4920 5948 1540 Size: 275 186 312 1846 761 1028 2301 Fragments arranged by size: 2301 1846 1028 761 312 275 186 BsiHKAI G_wGCw'C Cuts at: 2058 2354 2537 2855 3527 3728 3741 4770 4855 Size: 296 183 318 672 201 13 1029 85 Cuts at: 4855 5926 2058 Size: 1071 2841 Fragments arranged by size: 2841 1071 1029 672 318 296 201 183 85 13 BsmI GAATG_Cn' Cuts at: 2016 4220 4313 2016 Size: 2204 93 4412 Fragments arranged by size: 4412 2204 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2058 2354 2429 2537 2855 2882 2895 Size: 399 268 296 75 108 318 27 13 Cuts at: 2895 3527 3728 3741 3883 4028 4770 4855 5926 Size: 632 201 13 142 145 742 85 1071 Cuts at: 5926 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 632 399 318 296 268 201 145 142 108 85 75 27 13 13 BspEI T'CCGG_A Cuts at: 3082 6372 3082 Size: 3290 3419 BspHI T'CATG_A Cuts at: 4598 6328 4598 Size: 1730 4979 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2487 3268 3315 4064 844 Size: 1643 781 47 749 3489 Fragments arranged by size: 3489 1643 781 749 47 BsrBI CCG'CTC Cuts at: 1394 1823 4596 1394 Size: 429 2773 3507 Fragments arranged by size: 3507 2773 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3100 3191 3853 5204 5378 65 Size: 1183 1852 91 662 1351 174 1396 Fragments arranged by size: 1852 1396 1351 1183 662 174 91 BsrFI r'CCGG_y Cuts at: 1700 1810 2156 5353 5540 1700 Size: 110 346 3197 187 2869 Fragments arranged by size: 3197 2869 346 187 110 BsrGI T'GTAC_A Cuts at: 96 2259 96 Size: 2163 4546 BssHII G'CGCG_C Cuts at: 1925 2131 1925 Size: 206 6503 BssSI C'ACGA_G Cuts at: 2594 4769 5781 2594 Size: 2175 1012 3522 Fragments arranged by size: 3522 2175 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 2236 2818 3193 3531 794 Size: 1442 582 375 338 3972 Fragments arranged by size: 3972 1442 582 375 338 BstBI TT'CG_AA Cuts at: 5513 5513 Size: 6709 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6709 BstYI r'GATC_y Cuts at: 1972 2208 2301 2394 2511 2823 4039 4406 4791 Size: 236 93 93 117 312 1216 367 385 Cuts at: 4791 4808 6260 6346 6358 6704 1972 Size: 17 1452 86 12 346 1977 Fragments arranged by size: 1977 1452 1216 385 367 346 312 236 117 93 93 86 17 12 Bsu36I CC'TnA_GG Cuts at: 3245 3245 Size: 6709 BtgI C'CryG_G Cuts at: 513 1065 2083 2116 2420 3333 513 Size: 552 1018 33 304 913 3889 Fragments arranged by size: 3889 1018 913 552 304 33 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2394 487 Size: 683 56 1168 4802 Fragments arranged by size: 4802 1168 683 56 BtsI GCAGTG_nn' Cuts at: 2586 2713 3346 4225 5019 5039 2586 Size: 127 633 879 794 20 4256 Fragments arranged by size: 4256 879 794 633 127 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6709 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6674 DraI TTT'AAA Cuts at: 4013 4013 Size: 6709 DraIII CAC_nnn'GTG Cuts at: 2503 3661 2503 Size: 1158 5551 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2918 3149 5716 809 Size: 507 1602 231 2567 1802 Fragments arranged by size: 2567 1802 1602 507 231 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2086 2310 4156 Size: 54 1425 50 275 18 256 224 1846 Cuts at: 4156 5045 6674 8 Size: 889 1629 43 Fragments arranged by size: 1846 1629 1425 889 275 256 224 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2310 4156 1537 Size: 275 498 1846 4090 Fragments arranged by size: 4090 1846 498 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3323 3365 3716 4639 1353 Size: 1970 42 351 923 3423 Fragments arranged by size: 3423 1970 923 351 42 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 5296 5670 5816 387 Size: 1064 138 3707 374 146 1280 Fragments arranged by size: 3707 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 3726 3726 Size: 6709 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2026 3346 3836 4772 5369 6156 6424 Size: 393 394 1320 490 936 597 787 268 Cuts at: 6424 1239 Size: 1524 Fragments arranged by size: 1524 1320 936 787 597 490 394 393 268 EcoO109I rG'GnC_Cy Cuts at: 3852 3852 Size: 6709 EcoRI G'AATT_C Cuts at: 4018 4396 4018 Size: 378 6331 FspI TGC'GCA Cuts at: 2111 2741 5215 2111 Size: 630 2474 3605 Fragments arranged by size: 3605 2474 630 FspAI rTGC'GCAy Cuts at: 2111 2741 2111 Size: 630 6079 HaeII r_GCGC'y Cuts at: 1678 2563 2668 2686 3455 3625 3712 5856 1678 Size: 885 105 18 769 170 87 2144 2531 Fragments arranged by size: 2531 2144 885 769 170 105 87 18 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2198 2230 2453 2485 5350 Size: 32 135 32 626 32 223 32 2865 Cuts at: 5350 5382 5424 5456 1373 Size: 32 42 32 2626 Fragments arranged by size: 2865 2626 626 223 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3172 3429 4053 4299 669 Size: 988 281 1234 257 624 246 3079 Fragments arranged by size: 3079 1234 988 624 281 257 246 HindIII A'AGCT_T Cuts at: 748 2905 748 Size: 2157 4552 HpaI GTT'AAC Cuts at: 4299 4299 Size: 6709 KpnI G_GTAC'C Cuts at: 4034 4034 Size: 6709 MfeI C'AATT_G Cuts at: 4308 4308 Size: 6709 MluI A'CGCG_T Cuts at: 2529 6585 2529 Size: 4056 2653 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2268 3165 5823 6007 1305 Size: 963 897 2658 184 2007 Fragments arranged by size: 2658 2007 963 897 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2088 10 Size: 54 1425 343 256 4631 Fragments arranged by size: 4631 1425 343 256 54 MslI CAynn'nnrTG Cuts at: 518 1166 2094 3588 3674 3688 3989 4667 5026 Size: 648 928 1494 86 14 301 678 359 Cuts at: 5026 5185 518 Size: 159 2042 Fragments arranged by size: 2042 1494 928 678 648 359 301 159 86 14 MspA1I CmG'CkG Cuts at: 1606 2142 2265 2422 2553 2574 2643 3035 3293 Size: 536 123 157 131 21 69 392 258 Cuts at: 3293 3335 3445 4125 4802 5950 6195 1606 Size: 42 110 680 677 1148 245 2120 Fragments arranged by size: 2120 1148 680 677 536 392 258 245 157 131 123 110 69 42 21 NaeI GCC'GGC Cuts at: 2158 2158 Size: 6709 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 6157 NdeI CA'TA_TG Cuts at: 387 387 Size: 6709 NgoMIV G'CCGG_C Cuts at: 2156 2156 Size: 6709 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6709 NotI GC'GGCC_GC Cuts at: 4156 4156 Size: 6709 NsiI A_TGCA'T Cuts at: 3996 3996 Size: 6709 NspI r_CATG'y Cuts at: 1132 1229 2128 3577 3745 3998 4067 5612 1132 Size: 97 899 1449 168 253 69 1545 2229 Fragments arranged by size: 2229 1545 1449 899 253 168 97 69 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 6709 PciI A'CATG_T Cuts at: 3573 5608 3573 Size: 2035 4674 PflMI CCAn_nnn'nTGG Cuts at: 1108 2629 1108 Size: 1521 5188 PfoI T'CCnGG_A Cuts at: 2172 2397 2826 3813 2172 Size: 225 429 987 5068 Fragments arranged by size: 5068 987 429 225 PmeI GTTT'AAAC Cuts at: 4013 4013 Size: 6709 PmlI CAC'GTG Cuts at: 3826 3826 Size: 6709 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4778 4810 6291 6323 4778 Size: 32 1481 32 5164 Fragments arranged by size: 5164 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 3852 3852 Size: 6709 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6709 PsiI TTA'TAA Cuts at: 4279 4279 Size: 6709 PstI C_TGCA'G Cuts at: 830 2301 2328 2484 3025 3865 4061 830 Size: 1471 27 156 541 840 196 3478 Fragments arranged by size: 3478 1471 840 541 196 156 27 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6709 PvuII CAG'CTG Cuts at: 2643 3293 3445 2643 Size: 650 152 5907 Fragments arranged by size: 5907 650 152 SacI G_AGCT'C Cuts at: 3728 3728 Size: 6709 SacII CC_GC'GG Cuts at: 2423 3336 2423 Size: 913 5796 SalI G'TCGA_C Cuts at: 1936 3427 4051 1936 Size: 1491 624 4594 Fragments arranged by size: 4594 1491 624 SanDI GG'GwC_CC Cuts at: 3852 3852 Size: 6709 SapI GCTCTTCn'nnn_ Cuts at: 3716 3716 Size: 6709 SbfI CC_TGCA'GG Cuts at: 3865 4061 3865 Size: 196 6513 ScaI AGT'ACT Cuts at: 4957 6669 4957 Size: 1712 4997 SfcI C'TryA_G Cuts at: 826 1045 2194 2297 2324 2480 3021 3861 4057 Size: 219 1149 103 27 156 541 840 196 Cuts at: 4057 5192 5873 6064 826 Size: 1135 681 191 1471 Fragments arranged by size: 1471 1149 1135 840 681 541 219 196 191 156 103 27 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6709 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6709 SmaI CCC'GGG Cuts at: 1872 2391 4036 1872 Size: 519 1645 4545 Fragments arranged by size: 4545 1645 519 SmlI C'TyrA_G Cuts at: 820 1017 1943 2057 4813 5714 5976 820 Size: 197 926 114 2756 901 262 1553 Fragments arranged by size: 2756 1553 926 901 262 197 114 SnaBI TAC'GTA Cuts at: 493 4500 493 Size: 4007 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6709 SphI G_CATG'C Cuts at: 1132 2128 4067 1132 Size: 996 1939 3774 Fragments arranged by size: 3774 1939 996 SspI AAT'ATT Cuts at: 5 52 4633 5 Size: 47 4581 2081 Fragments arranged by size: 4581 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 6709 StyI C'CwwG_G Cuts at: 513 1065 4148 513 Size: 552 3083 3074 Fragments arranged by size: 3083 3074 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2024 2505 3020 3157 3731 4736 4753 Size: 1255 444 481 515 137 574 1005 17 Cuts at: 4753 4906 5091 5536 325 Size: 153 185 445 1498 Fragments arranged by size: 1498 1255 1005 574 515 481 445 444 185 153 137 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2259 4955 6667 Size: 274 80 33 51 1443 282 2696 1712 Cuts at: 6667 96 Size: 138 Fragments arranged by size: 2696 1712 1443 282 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 6669 6701 6669 Size: 32 6677 Tth111I GACn'n_nGTC Cuts at: 1316 3409 1316 Size: 2093 4616 XbaI T'CTAG_A Cuts at: 4045 4045 Size: 6709 XhoI C'TCGA_G Cuts at: 1943 2057 1943 Size: 114 6595 XmaI C'CCGG_G Cuts at: 1870 2389 4034 1870 Size: 519 1645 4545 Fragments arranged by size: 4545 1645 519 XmnI GAAnn'nnTTC Cuts at: 4838 4838 Size: 6709 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4517 276 Size: 53 83 186 936 2983 2468 Fragments arranged by size: 2983 2468 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI FspAI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NsiI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SacII SalI SanDI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BsiWI BsmBI BstXI BstZ17I EcoNI EcoRV FalI FseI KasI NarI NruI PacI PspOMI PspXI PsrI RsrII SexAI SfiI SfoI SrfI SwaI XcmI