Result of FASTA (omim) for
pFN21AB8230
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8230, 346 aa
1>>>pF1KB8230 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3615+/-0.000341; mu= 4.8677+/- 0.021
mean_var=213.5339+/-43.540, 0's: 0 Z-trim(121.6): 65 B-trim: 0 in 0/56
Lambda= 0.087769
statistics sampled from 38325 (38390) to 38325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.45), width: 16
Scan time: 6.220
The best scores are: opt bits E(85289)
NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 2333 307.5 2.8e-83
XP_011515098 (OMIM: 610421) PREDICTED: KH domain-c ( 346) 2156 285.0 1.6e-76
XP_011515099 (OMIM: 610421) PREDICTED: KH domain-c ( 319) 2146 283.8 3.6e-76
XP_005250814 (OMIM: 610421) PREDICTED: KH domain-c ( 318) 2145 283.6 3.9e-76
XP_005250815 (OMIM: 610421) PREDICTED: KH domain-c ( 302) 1979 262.6 8e-70
XP_011515100 (OMIM: 610421) PREDICTED: KH domain-c ( 303) 1795 239.3 8.3e-63
NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 1505 202.6 1e-51
XP_011515101 (OMIM: 610421) PREDICTED: KH domain-c ( 252) 1326 179.8 5.5e-45
XP_016865834 (OMIM: 610487) PREDICTED: KH domain-c ( 299) 1283 174.4 2.7e-43
XP_016865832 (OMIM: 610487) PREDICTED: KH domain-c ( 305) 1283 174.5 2.7e-43
NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 1273 173.3 8.7e-43
XP_011533818 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1171 160.3 5.3e-39
XP_016865830 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1171 160.3 5.3e-39
XP_016865831 (OMIM: 610487) PREDICTED: KH domain-c ( 316) 1170 160.2 5.7e-39
XP_016865826 (OMIM: 610487) PREDICTED: KH domain-c ( 366) 1170 160.2 6.4e-39
XP_011533822 (OMIM: 610487) PREDICTED: KH domain-c ( 285) 1156 158.3 1.8e-38
XP_016865828 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1155 158.3 2.4e-38
XP_016865829 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1155 158.3 2.4e-38
XP_016865825 (OMIM: 610487) PREDICTED: KH domain-c ( 367) 1155 158.3 2.4e-38
XP_016865823 (OMIM: 610487) PREDICTED: KH domain-c ( 413) 1155 158.4 2.6e-38
XP_011533821 (OMIM: 610487) PREDICTED: KH domain-c ( 302) 1152 157.9 2.7e-38
XP_011533819 (OMIM: 610487) PREDICTED: KH domain-c ( 320) 1152 157.9 2.8e-38
XP_011533817 (OMIM: 610487) PREDICTED: KH domain-c ( 324) 1152 157.9 2.8e-38
XP_016865824 (OMIM: 610487) PREDICTED: KH domain-c ( 381) 1152 158.0 3.2e-38
XP_016865836 (OMIM: 610487) PREDICTED: KH domain-c ( 251) 1031 142.5 9.6e-34
XP_016865837 (OMIM: 610487) PREDICTED: KH domain-c ( 180) 847 119.0 7.7e-27
NP_001258807 (OMIM: 602489) KH domain-containing, ( 404) 748 106.8 8.3e-23
XP_016865833 (OMIM: 610487) PREDICTED: KH domain-c ( 300) 662 95.8 1.3e-19
XP_016865827 (OMIM: 610487) PREDICTED: KH domain-c ( 364) 578 85.3 2.3e-16
NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319) 479 72.7 1.3e-12
NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319) 479 72.7 1.3e-12
NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325) 479 72.7 1.3e-12
XP_016866991 (OMIM: 609590) PREDICTED: protein qua ( 337) 479 72.7 1.3e-12
NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341) 479 72.7 1.3e-12
XP_016866992 (OMIM: 609590) PREDICTED: protein qua ( 318) 466 71.0 3.9e-12
XP_011534560 (OMIM: 609590) PREDICTED: protein qua ( 340) 466 71.0 4.1e-12
XP_016866993 (OMIM: 609590) PREDICTED: protein qua ( 311) 465 70.9 4.2e-12
XP_011534561 (OMIM: 609590) PREDICTED: protein qua ( 317) 465 70.9 4.3e-12
NP_001288014 (OMIM: 609590) protein quaking isofor ( 333) 465 70.9 4.4e-12
XP_011534563 (OMIM: 609590) PREDICTED: protein qua ( 198) 374 59.2 8.9e-09
XP_016865835 (OMIM: 610487) PREDICTED: KH domain-c ( 277) 313 51.6 2.4e-06
XP_011534562 (OMIM: 609590) PREDICTED: protein qua ( 293) 251 43.8 0.00058
NP_001333338 (OMIM: 601516) splicing factor 1 isof ( 433) 250 43.8 0.00084
NP_001333339 (OMIM: 601516) splicing factor 1 isof ( 456) 250 43.8 0.00087
XP_016873739 (OMIM: 601516) PREDICTED: splicing fa ( 524) 250 43.9 0.00097
XP_016873740 (OMIM: 601516) PREDICTED: splicing fa ( 524) 250 43.9 0.00097
XP_016873738 (OMIM: 601516) PREDICTED: splicing fa ( 524) 250 43.9 0.00097
XP_016873735 (OMIM: 601516) PREDICTED: splicing fa ( 542) 250 43.9 0.00099
XP_011543550 (OMIM: 601516) PREDICTED: splicing fa ( 545) 250 43.9 0.001
NP_973727 (OMIM: 601516) splicing factor 1 isoform ( 548) 250 43.9 0.001
>>NP_006549 (OMIM: 610421) KH domain-containing, RNA-bin (346 aa)
initn: 2333 init1: 2333 opt: 2333 Z-score: 1616.0 bits: 307.5 E(85289): 2.8e-83
Smith-Waterman score: 2333; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
250 260 270 280 290 300
310 320 330 340
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
310 320 330 340
>>XP_011515098 (OMIM: 610421) PREDICTED: KH domain-conta (346 aa)
initn: 2156 init1: 2156 opt: 2156 Z-score: 1494.9 bits: 285.0 E(85289): 1.6e-76
Smith-Waterman score: 2156; 99.1% identity (99.4% similar) in 322 aa overlap (25-346:25-346)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
: . ::::::::::::::::::::::::::::::::
XP_011 MMIIKATNLRLFRASCFLCILSHPRKILQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
250 260 270 280 290 300
310 320 330 340
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
310 320 330 340
>>XP_011515099 (OMIM: 610421) PREDICTED: KH domain-conta (319 aa)
initn: 2146 init1: 2146 opt: 2146 Z-score: 1488.5 bits: 283.8 E(85289): 3.6e-76
Smith-Waterman score: 2146; 99.7% identity (100.0% similar) in 318 aa overlap (29-346:2-319)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
.:::::::::::::::::::::::::::::::
XP_011 MHEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
220 230 240 250 260 270
310 320 330 340
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
280 290 300 310
>>XP_005250814 (OMIM: 610421) PREDICTED: KH domain-conta (318 aa)
initn: 2145 init1: 2145 opt: 2145 Z-score: 1487.8 bits: 283.6 E(85289): 3.9e-76
Smith-Waterman score: 2145; 100.0% identity (100.0% similar) in 317 aa overlap (30-346:2-318)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
:::::::::::::::::::::::::::::::
XP_005 MEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
220 230 240 250 260 270
310 320 330 340
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
280 290 300 310
>>XP_005250815 (OMIM: 610421) PREDICTED: KH domain-conta (302 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 1374.5 bits: 262.6 E(85289): 8e-70
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQRARR
250 260 270 280 290 300
310 320 330 340
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
XP_005 VD
>>XP_011515100 (OMIM: 610421) PREDICTED: KH domain-conta (303 aa)
initn: 1863 init1: 1794 opt: 1795 Z-score: 1248.6 bits: 239.3 E(85289): 8.3e-63
Smith-Waterman score: 1795; 91.7% identity (94.3% similar) in 300 aa overlap (1-300:1-298)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
::::::::::::::::::::::::::::: .: . : . . .. :: .. ::
XP_011 LLTPRARGVPPTGYRPPPPPPTQETYGEYGKKSG--LTQDTRHLQRGQQRASTETSHMAD
250 260 270 280 290
310 320 330 340
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
XP_011 TDCTV
300
>>NP_689901 (OMIM: 610487) KH domain-containing, RNA-bin (349 aa)
initn: 1244 init1: 828 opt: 1505 Z-score: 1049.3 bits: 202.6 E(85289): 1e-51
Smith-Waterman score: 1505; 67.5% identity (84.0% similar) in 357 aa overlap (2-346:3-349)
10 20 30 40 50
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEK-YIDVVINKNMKL
:::::::::::::::::::.:: ::. .:::::: ..:: :::: :.::. :::.::
NP_689 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSG
...:::::::.:::::::::::::::::::::::: .:::::::::::::::::::::::
NP_689 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 EAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG
:::: ::.:.:::::::::::.:::.::.::::::::::.::::::::: ::.::.::::
NP_689 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 GSENADVPVVRGKPTLRTRGVP-AP-AITRGRGGVTARPV----GVVVPRGTPTPRGVLS
::.. ::. .: ::. :: : .:::::. : ::..:::. . ::.:
NP_689 -SEDSG----RGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALP
190 200 210 220 230
240 250 260 270 280
pF1KB8 TRGPVSRGRGLLTPRARGVPPT-GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDN
. ::.: :. ::::::.: . ::: :::: ..:.: :: :::::: ::.:.:..:::
NP_689 V-PPVAR--GVPTPRARGAPTVPGYRAPPPP-AHEAYEEYGYDDGYGGEYDDQTYETYDN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 SYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRH--KAPSARTAKGVYRDQPYGRY
::.: .:: .:::::::.::..::::. :::...: ::: :.:.: ::..:::::
NP_689 SYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY
300 310 320 330 340
>>XP_011515101 (OMIM: 610421) PREDICTED: KH domain-conta (252 aa)
initn: 1326 init1: 1326 opt: 1326 Z-score: 928.7 bits: 179.8 E(85289): 5.5e-45
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRIPAQNEYPLQNRVWRIEHIRCCCLGDTVFLTLDLPF
190 200 210 220 230 240
>>XP_016865834 (OMIM: 610487) PREDICTED: KH domain-conta (299 aa)
initn: 1200 init1: 815 opt: 1283 Z-score: 898.3 bits: 174.4 E(85289): 2.7e-43
Smith-Waterman score: 1283; 68.9% identity (84.3% similar) in 305 aa overlap (2-296:3-297)
10 20 30 40 50
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEK-YIDVVINKNMKL
:::::::::::::::::::.:: ::. .:::::: ..:: :::: :.::. :::.::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSG
...:::::::.:::::::::::::::::::::::: .:::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 EAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG
:::: ::.:.:::::::::::.:::.::.::::::::::.::::::::: ::.::.::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 GSENADVPVVRGKPTLRTRGVP-AP-AITRGRGGVTARPV----GVVVPRGTPTPRGVLS
::.. ::. .: ::. :: : .:::::. : ::..:::. . ::.:
XP_016 -SEDSG----RGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALP
190 200 210 220 230
240 250 260 270 280
pF1KB8 TRGPVSRGRGLLTPRARGVPPT-GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDN
. ::.:: . ::::::.: . ::: :::: ..:.: :: :::::: ::.:.:..:::
XP_016 V-PPVARG--VPTPRARGAPTVPGYRAPPPP-AHEAYEEYGYDDGYGGEYDDQTYETYDN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 SYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
::.: .:
XP_016 SYATQTQRY
>>XP_016865832 (OMIM: 610487) PREDICTED: KH domain-conta (305 aa)
initn: 1200 init1: 815 opt: 1283 Z-score: 898.2 bits: 174.5 E(85289): 2.7e-43
Smith-Waterman score: 1283; 68.9% identity (84.3% similar) in 305 aa overlap (2-296:3-297)
10 20 30 40 50
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEK-YIDVVINKNMKL
:::::::::::::::::::.:: ::. .:::::: ..:: :::: :.::. :::.::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSG
...:::::::.:::::::::::::::::::::::: .:::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 EAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG
:::: ::.:.:::::::::::.:::.::.::::::::::.::::::::: ::.::.::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 GSENADVPVVRGKPTLRTRGVP-AP-AITRGRGGVTARPV----GVVVPRGTPTPRGVLS
::.. ::. .: ::. :: : .:::::. : ::..:::. . ::.:
XP_016 -SEDSG----RGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALP
190 200 210 220 230
240 250 260 270 280
pF1KB8 TRGPVSRGRGLLTPRARGVPPT-GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDN
. ::.:: . ::::::.: . ::: :::: ..:.: :: :::::: ::.:.:..:::
XP_016 V-PPVARG--VPTPRARGAPTVPGYRAPPPP-AHEAYEEYGYDDGYGGEYDDQTYETYDN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 SYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
::.: .:
XP_016 SYATQTQRTYRVCGQ
300
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:47:14 2016 done: Fri Nov 4 10:47:15 2016
Total Scan time: 6.220 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]