Result of FASTA (omim) for
pFN21AB8211
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8211, 363 aa
1>>>pF1KB8211 363 - 363 aa - 363 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.2325+/-0.000422; mu= -17.6783+/- 0.026
mean_var=601.7033+/-126.003, 0's: 0 Z-trim(124.9): 117 B-trim: 0 in 0/60
Lambda= 0.052286
statistics sampled from 47381 (47551) to 47381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.558), width: 16
Scan time: 9.640
The best scores are: opt bits E(85289)
NP_001009998 (OMIM: 607391) single-stranded DNA-bi ( 363) 2596 210.0 7e-54
XP_006722731 (OMIM: 607391) PREDICTED: single-stra ( 413) 2540 205.8 1.4e-52
XP_016881925 (OMIM: 607391) PREDICTED: single-stra ( 496) 2540 205.9 1.6e-52
XP_016881926 (OMIM: 607391) PREDICTED: single-stra ( 385) 2469 200.4 5.6e-51
XP_016881924 (OMIM: 607391) PREDICTED: single-stra ( 507) 2423 197.1 7.5e-50
XP_016881923 (OMIM: 607391) PREDICTED: single-stra ( 518) 2413 196.3 1.3e-49
NP_001009955 (OMIM: 607390) single-stranded DNA-bi ( 361) 1985 163.9 5.3e-40
NP_036578 (OMIM: 607389) single-stranded DNA-bindi ( 361) 1966 162.4 1.4e-39
NP_001243661 (OMIM: 607389) single-stranded DNA-bi ( 369) 1944 160.8 4.5e-39
XP_016864794 (OMIM: 607389) PREDICTED: single-stra ( 357) 1878 155.8 1.4e-37
NP_060540 (OMIM: 607390) single-stranded DNA-bindi ( 368) 1871 155.3 2.1e-37
XP_016864793 (OMIM: 607389) PREDICTED: single-stra ( 365) 1856 154.1 4.5e-37
XP_016864795 (OMIM: 607389) PREDICTED: single-stra ( 328) 1788 149.0 1.5e-35
NP_001332815 (OMIM: 607389) single-stranded DNA-bi ( 336) 1766 147.3 4.7e-35
NP_116016 (OMIM: 607391) single-stranded DNA-bindi ( 385) 1757 146.7 8.3e-35
XP_005259847 (OMIM: 607391) PREDICTED: single-stra ( 407) 1757 146.7 8.6e-35
XP_006722729 (OMIM: 607391) PREDICTED: single-stra ( 435) 1701 142.5 1.7e-33
XP_006722728 (OMIM: 607391) PREDICTED: single-stra ( 457) 1701 142.5 1.7e-33
XP_016881922 (OMIM: 607391) PREDICTED: single-stra ( 518) 1701 142.6 1.9e-33
XP_016881921 (OMIM: 607391) PREDICTED: single-stra ( 529) 1701 142.6 1.9e-33
XP_016881920 (OMIM: 607391) PREDICTED: single-stra ( 540) 1701 142.6 2e-33
XP_016856388 (OMIM: 607390) PREDICTED: single-stra ( 251) 1299 112.0 1.5e-24
XP_016856387 (OMIM: 607390) PREDICTED: single-stra ( 278) 1270 109.8 7.5e-24
XP_016856386 (OMIM: 607390) PREDICTED: single-stra ( 278) 1270 109.8 7.5e-24
NP_663768 (OMIM: 607390) single-stranded DNA-bindi ( 388) 1270 110.0 9.5e-24
XP_016864796 (OMIM: 607389) PREDICTED: single-stra ( 327) 1239 107.5 4.3e-23
NP_001243664 (OMIM: 607389) single-stranded DNA-bi ( 331) 1239 107.6 4.3e-23
XP_006710608 (OMIM: 607390) PREDICTED: single-stra ( 341) 1172 102.5 1.5e-21
XP_016864798 (OMIM: 607389) PREDICTED: single-stra ( 257) 1111 97.8 2.9e-20
XP_016864797 (OMIM: 607389) PREDICTED: single-stra ( 257) 1111 97.8 2.9e-20
XP_016864799 (OMIM: 607389) PREDICTED: single-stra ( 257) 1111 97.8 2.9e-20
NP_001243665 (OMIM: 607389) single-stranded DNA-bi ( 298) 1061 94.1 4.4e-19
NP_001243662 (OMIM: 607389) single-stranded DNA-bi ( 341) 888 81.1 4.1e-15
NP_001243663 (OMIM: 607389) single-stranded DNA-bi ( 339) 744 70.2 7.6e-12
>>NP_001009998 (OMIM: 607391) single-stranded DNA-bindin (363 aa)
initn: 2596 init1: 2596 opt: 2596 Z-score: 1088.3 bits: 210.0 E(85289): 7e-54
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
310 320 330 340 350 360
pF1KB8 MSV
:::
NP_001 MSV
>>XP_006722731 (OMIM: 607391) PREDICTED: single-stranded (413 aa)
initn: 2645 init1: 2540 opt: 2540 Z-score: 1064.8 bits: 205.8 E(85289): 1.4e-52
Smith-Waterman score: 2540; 99.7% identity (99.7% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_006 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDCVD
310 320 330 340 350 360
pF1KB8 MSV
XP_006 SPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPVLARDDHERVMGRQPRASLRA
370 380 390 400 410
>>XP_016881925 (OMIM: 607391) PREDICTED: single-stranded (496 aa)
initn: 2592 init1: 2540 opt: 2540 Z-score: 1063.8 bits: 205.9 E(85289): 1.6e-52
Smith-Waterman score: 2540; 99.7% identity (99.7% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_016 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDCVD
310 320 330 340 350 360
pF1KB8 MSV
XP_016 SPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQPLPTPHHLPLLFHRP
370 380 390 400 410 420
>>XP_016881926 (OMIM: 607391) PREDICTED: single-stranded (385 aa)
initn: 2469 init1: 2469 opt: 2469 Z-score: 1036.2 bits: 200.4 E(85289): 5.6e-51
Smith-Waterman score: 2469; 99.7% identity (100.0% similar) in 344 aa overlap (20-363:42-385)
10 20 30 40
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEK
.:::::::::::::::::::::::::::::
XP_016 YTFAVWSAMLSVAANVCGWVYNNVGGRLHLRLALYVYEYLLHIGAQKSAQTFLSEIRWEK
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB8 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB8 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB8 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB8 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB8 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
320 330 340 350 360 370
350 360
pF1KB8 FPSESYSPGMTMSV
::::::::::::::
XP_016 FPSESYSPGMTMSV
380
>>XP_016881924 (OMIM: 607391) PREDICTED: single-stranded (507 aa)
initn: 2471 init1: 2419 opt: 2423 Z-score: 1015.9 bits: 197.1 E(85289): 7.5e-50
Smith-Waterman score: 2423; 95.8% identity (96.9% similar) in 357 aa overlap (4-356:15-367)
10 20 30 40
pF1KB8 MYAKGGK---GS-AVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEI
.::. :. ::: : .:::::::::::::::::::::::::
XP_016 MDAGGTNEEVNERRRGGRMRFGARAVP----MRTRLALYVYEYLLHIGAQKSAQTFLSEI
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 RWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPS
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 GPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGT
300 310 320 330 340 350
350 360
pF1KB8 FLHPFPSESYSPGMTMSV
::::::::: :
XP_016 FLHPFPSESVSDCVDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQ
360 370 380 390 400 410
>>XP_016881923 (OMIM: 607391) PREDICTED: single-stranded (518 aa)
initn: 2462 init1: 2410 opt: 2413 Z-score: 1011.8 bits: 196.3 E(85289): 1.3e-49
Smith-Waterman score: 2413; 99.4% identity (99.7% similar) in 337 aa overlap (20-356:42-378)
10 20 30 40
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEK
.:::::::::::::::::::::::::::::
XP_016 YTFAVWSAMLSVAANVCGWVYNNVGGRLHLRLALYVYEYLLHIGAQKSAQTFLSEIRWEK
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB8 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB8 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB8 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB8 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB8 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
320 330 340 350 360 370
350 360
pF1KB8 FPSESYSPGMTMSV
::::: :
XP_016 FPSESVSDCVDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQPLPT
380 390 400 410 420 430
>>NP_001009955 (OMIM: 607390) single-stranded DNA-bindin (361 aa)
initn: 1945 init1: 1055 opt: 1985 Z-score: 839.2 bits: 163.9 E(85289): 5.3e-40
Smith-Waterman score: 1985; 73.0% identity (91.8% similar) in 366 aa overlap (1-363:1-361)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
:.::: ::::::::.::::::::::::::::.::::::::::::::::::::::::::::
NP_001 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
:::::::::::::::.::..::::.:::::.:::::::::::.:.. :.: : .: . :
NP_001 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
:::::::::. ::::: .:: .:::.:.::.:::::..:.:. : ::::.::: :::..:
NP_001 FFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT-RQQGHPNMGGSMQRMNP
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 PRGMASVGP--QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPG
::::. .:: :.::.::::::::: ::..:..:::::. :: .: :.:::::::::::
NP_001 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS
.:.:::::::::::::::::.::::::.:.::..::. :..:.:::.::: .:::..:.
NP_001 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP
.:::::.::::::::.:::::.::. ..:.:: :::::::::. .:.::: : ...:::
NP_001 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHSFQNDNYSP
300 310 320 330 340 350
360
pF1KB8 GMTMSV
.:::::
NP_001 SMTMSV
360
>>NP_036578 (OMIM: 607389) single-stranded DNA-binding p (361 aa)
initn: 1846 init1: 1390 opt: 1966 Z-score: 831.5 bits: 162.4 E(85289): 1.4e-39
Smith-Waterman score: 1966; 73.7% identity (91.0% similar) in 365 aa overlap (1-363:1-361)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_036 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
NP_036 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
NP_036 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
130 140 150 160 170
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
NP_036 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
NP_036 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
:: ::.::::::::::.. :.::. .. ::: :::::::::: .:.::.:: ::::::.
NP_036 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS
300 310 320 330 340 350
360
pF1KB8 MTMSV
:::::
NP_036 MTMSV
360
>>NP_001243661 (OMIM: 607389) single-stranded DNA-bindin (369 aa)
initn: 1753 init1: 934 opt: 1944 Z-score: 822.4 bits: 160.8 E(85289): 4.5e-39
Smith-Waterman score: 1944; 72.4% identity (89.0% similar) in 373 aa overlap (1-363:1-369)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_001 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
NP_001 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
NP_001 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
130 140 150 160 170
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQS--------YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIP
:::::. .:::: :::.:::: :.:.:::.:.:::::: :: .:.. ::::
NP_001 PPRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE
:::.:::.:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .
NP_001 YSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF
:::.....:: ::.::::::::::.. :.::. .. ::: :::::::::: .:.::.::
NP_001 GPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPF
300 310 320 330 340 350
360
pF1KB8 PSESYSPGMTMSV
::::::.:::::
NP_001 QSESYSPSMTMSV
360
>>XP_016864794 (OMIM: 607389) PREDICTED: single-stranded (357 aa)
initn: 1775 init1: 1319 opt: 1878 Z-score: 795.7 bits: 155.8 E(85289): 1.4e-37
Smith-Waterman score: 1878; 73.3% identity (90.7% similar) in 345 aa overlap (20-363:17-357)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
.:::::::::::.::::::::::::::::::::::::::::
XP_016 MLVIPSALMYSFVLYWRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
:::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: . :
XP_016 HSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
:::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.::
XP_016 FFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMTP
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGSY
::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.:
XP_016 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM
.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....:
XP_016 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM
: ::.::::::::::.. :.::. .. ::: ::::::::::. :.::.:: ::::::.:
XP_016 ESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPSM
300 310 320 330 340 350
360
pF1KB8 TMSV
::::
XP_016 TMSV
363 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:36:43 2016 done: Fri Nov 4 10:36:44 2016
Total Scan time: 9.640 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]