Result of FASTA (omim) for
pFN21AB8199
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8199, 206 aa
1>>>pF1KB8199 206 - 206 aa - 206 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4400+/-0.00028; mu= 15.6326+/- 0.018
mean_var=99.1516+/-19.994, 0's: 0 Z-trim(120.8): 12 B-trim: 0 in 0/58
Lambda= 0.128802
statistics sampled from 36586 (36600) to 36586 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.429), width: 16
Scan time: 5.080
The best scores are: opt bits E(85289)
NP_001032726 (OMIM: 602542) transcription factor B ( 206) 1334 257.0 1.5e-68
NP_001198 (OMIM: 602542) transcription factor BTF3 ( 162) 1015 197.6 9.1e-51
NP_001106673 (OMIM: 601234) nascent polypeptide-as ( 215) 165 39.8 0.0039
NP_001307122 (OMIM: 601234) nascent polypeptide-as ( 215) 165 39.8 0.0039
NP_005585 (OMIM: 601234) nascent polypeptide-assoc ( 215) 165 39.8 0.0039
NP_001106672 (OMIM: 601234) nascent polypeptide-as ( 215) 165 39.8 0.0039
XP_006719481 (OMIM: 601234) PREDICTED: nascent pol ( 219) 165 39.8 0.004
NP_001307123 (OMIM: 601234) nascent polypeptide-as ( 219) 165 39.8 0.004
XP_006719483 (OMIM: 601234) PREDICTED: nascent pol ( 219) 165 39.8 0.004
>>NP_001032726 (OMIM: 602542) transcription factor BTF3 (206 aa)
initn: 1334 init1: 1334 opt: 1334 Z-score: 1351.5 bits: 257.0 E(85289): 1.5e-68
Smith-Waterman score: 1334; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL
130 140 150 160 170 180
190 200
pF1KB8 ATGEDDDDEVPDLVENFDEASKNEAN
::::::::::::::::::::::::::
NP_001 ATGEDDDDEVPDLVENFDEASKNEAN
190 200
>>NP_001198 (OMIM: 602542) transcription factor BTF3 iso (162 aa)
initn: 1015 init1: 1015 opt: 1015 Z-score: 1032.4 bits: 197.6 E(85289): 9.1e-51
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 162 aa overlap (45-206:1-162)
20 30 40 50 60 70
pF1KB8 RGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKK
::::::::::::::::::::::::::::::
NP_001 MKETIMNQEKLAKLQAQVRIGGKGTARRKK
10 20 30
80 90 100 110 120 130
pF1KB8 KVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 TGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLV
100 110 120 130 140 150
200
pF1KB8 ENFDEASKNEAN
::::::::::::
NP_001 ENFDEASKNEAN
160
>>NP_001106673 (OMIM: 601234) nascent polypeptide-associ (215 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.3 bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
NP_001 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
160 170 180 190 200 210
>>NP_001307122 (OMIM: 601234) nascent polypeptide-associ (215 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.3 bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
NP_001 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
160 170 180 190 200 210
>>NP_005585 (OMIM: 601234) nascent polypeptide-associate (215 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.3 bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
NP_005 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
NP_005 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
NP_005 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
NP_005 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
160 170 180 190 200 210
>>NP_001106672 (OMIM: 601234) nascent polypeptide-associ (215 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.3 bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
NP_001 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
160 170 180 190 200 210
>>XP_006719481 (OMIM: 601234) PREDICTED: nascent polypep (219 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.2 bits: 39.8 E(85289): 0.004
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
XP_006 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
XP_006 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
XP_006 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
XP_006 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
160 170 180 190 200 210
>>NP_001307123 (OMIM: 601234) nascent polypeptide-associ (219 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.2 bits: 39.8 E(85289): 0.004
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
NP_001 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
160 170 180 190 200 210
>>XP_006719483 (OMIM: 601234) PREDICTED: nascent polypep (219 aa)
initn: 70 init1: 54 opt: 165 Z-score: 177.2 bits: 39.8 E(85289): 0.004
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)
10 20 30 40 50 60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
:.: :. : : :: . :. : : . :.. . :. . ::
XP_006 MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
10 20 30 40
70 80 90 100 110
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
.. . ..: . .. : . . ..:: . ...:::. ...:. .:.. ... .. .
XP_006 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
..: : : :..:. . :.:. ..:... ::.: ... .::. . . . ..
XP_006 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
110 120 130 140 150
180 190 200
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN
: . :....:: . :: : : ..::
XP_006 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
160 170 180 190 200 210
206 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:29:23 2016 done: Fri Nov 4 10:29:24 2016
Total Scan time: 5.080 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]