(Circular) (Six-base) MAPSORT of: pFN21AB8197.seq Check: 6907 from: 1 to: 5200 pFN21AB8197 5200 bp With 182 enzymes: SgfI * February 27, 2009 14:41 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3010 278 Size: 53 83 186 936 1474 2468 Fragments arranged by size: 2468 1474 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2040 2543 1937 Size: 103 503 4594 Fragments arranged by size: 4594 503 103 Acc65I G'GTAC_C Cuts at: 2521 2521 Size: 5200 AclI AA'CG_TT Cuts at: 1563 3327 3700 1563 Size: 1764 373 3063 Fragments arranged by size: 3063 1764 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3263 4647 4915 1632 Size: 1631 1384 268 1917 Fragments arranged by size: 1917 1631 1384 268 AfeI AGC'GCT Cuts at: 2435 2435 Size: 5200 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5003 AflIII A'CryG_T Cuts at: 1203 4099 5076 1203 Size: 2896 977 1327 Fragments arranged by size: 2896 1327 977 AgeI A'CCGG_T Cuts at: 4031 4031 Size: 5200 AhdI GACnn_n'nnGTC Cuts at: 3929 3929 Size: 5200 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5200 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5200 AlwNI CAG_nnn'CTG Cuts at: 2943 4515 2943 Size: 1572 3628 ApaLI G'TGCA_C Cuts at: 3257 4413 3257 Size: 1156 4044 ApoI r'AATT_y Cuts at: 1493 2107 2249 2509 2735 2887 4996 1493 Size: 614 142 260 226 152 2109 1697 Fragments arranged by size: 2109 1697 614 260 226 152 142 AseI AT'TA_AT Cuts at: 160 1032 3754 160 Size: 872 2722 1606 Fragments arranged by size: 2722 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5200 AvaI C'yCGr_G Cuts at: 1870 1943 2525 1870 Size: 73 582 4545 Fragments arranged by size: 4545 582 73 BamHI G'GATC_C Cuts at: 2530 2897 2530 Size: 367 4833 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2521 3976 618 Size: 325 217 627 734 1455 1842 Fragments arranged by size: 1842 1455 734 627 325 217 BanII G_rGCy'C Cuts at: 1391 2052 2519 1391 Size: 661 467 4072 Fragments arranged by size: 4072 661 467 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4229 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3391 3425 1903 Size: 34 1454 34 3678 Fragments arranged by size: 3678 1454 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3092 4302 3092 Size: 1210 3990 BclI T'GATC_A Cuts at: 1548 1548 Size: 5200 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2217 3811 136 Size: 107 122 71 631 605 545 1594 1525 Fragments arranged by size: 1594 1525 631 605 545 122 107 71 BglII A'GATC_T Cuts at: 5195 5195 Size: 5200 BlpI GC'TnA_GC Cuts at: 2617 2617 Size: 5200 Bme1580I G_kGCm'C Cuts at: 1790 3261 4417 1790 Size: 1471 1156 2573 Fragments arranged by size: 2573 1471 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5200 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2329 2931 3889 Size: 416 53 83 399 24 912 602 958 Cuts at: 3889 442 Size: 1753 Fragments arranged by size: 1753 958 912 602 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5200 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2148 3860 1239 Size: 909 1712 2579 Fragments arranged by size: 2579 1712 909 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3325 4190 4488 3325 Size: 865 298 4037 Fragments arranged by size: 4037 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3863 882 Size: 617 2364 2219 Fragments arranged by size: 2364 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2991 493 Size: 711 1787 2702 Fragments arranged by size: 2702 1787 711 BsaBI GATnn'nnATC Cuts at: 5194 5194 Size: 5200 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3007 3389 4024 275 Size: 53 83 186 936 1474 382 635 1451 Fragments arranged by size: 1474 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3633 4031 4305 4452 4863 3633 Size: 398 274 147 411 3970 Fragments arranged by size: 3970 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4975 Fragments arranged by size: 4975 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5200 BseYI C'CCAG_C Cuts at: 4403 4899 4403 Size: 496 4704 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2332 1163 Size: 573 596 4031 Fragments arranged by size: 4031 596 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2650 3411 4439 1540 Size: 275 186 649 761 1028 2301 Fragments arranged by size: 2301 1028 761 649 275 186 BsiHKAI G_wGCw'C Cuts at: 2119 2126 3261 3346 4417 2119 Size: 7 1135 85 1071 2902 Fragments arranged by size: 2902 1135 1071 85 7 BsmI GAATG_Cn' Cuts at: 2711 2804 2711 Size: 93 5107 BsmBI CGTCTCn'nnnn_ Cuts at: 2068 2068 Size: 5200 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2052 2119 2126 2519 3261 3346 4417 Size: 399 262 67 7 393 742 85 1071 Cuts at: 4417 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 399 393 262 85 67 7 BspEI T'CCGG_A Cuts at: 4863 4863 Size: 5200 BspHI T'CATG_A Cuts at: 3089 4819 3089 Size: 1730 3470 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2555 844 Size: 1711 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3087 1394 Size: 429 1264 3507 Fragments arranged by size: 3507 1264 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2031 2475 3695 3869 65 Size: 1183 783 444 1220 174 1396 Fragments arranged by size: 1396 1220 1183 783 444 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3844 4031 1700 Size: 110 2034 187 2869 Fragments arranged by size: 2869 2034 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5200 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5200 BssSI C'ACGA_G Cuts at: 3260 4272 3260 Size: 1012 4188 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5200 BstBI TT'CG_AA Cuts at: 4004 4004 Size: 5200 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5200 BstYI r'GATC_y Cuts at: 1972 2530 2897 3282 3299 4751 4837 4849 5195 Size: 558 367 385 17 1452 86 12 346 Cuts at: 5195 1972 Size: 1977 Fragments arranged by size: 1977 1452 558 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2301 2427 513 Size: 552 939 297 126 3286 Fragments arranged by size: 3286 939 552 297 126 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4461 Fragments arranged by size: 4461 683 56 BtsI GCAGTG_nn' Cuts at: 2349 2716 3510 3530 2349 Size: 367 794 20 4019 Fragments arranged by size: 4019 794 367 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5200 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5165 DraI TTT'AAA Cuts at: 2504 2504 Size: 5200 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2036 4207 809 Size: 507 720 2171 1802 Fragments arranged by size: 2171 1802 720 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2647 3536 5165 Size: 54 1425 50 275 18 817 889 1629 Cuts at: 5165 8 Size: 43 Fragments arranged by size: 1629 1425 889 817 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2647 1537 Size: 275 835 4090 Fragments arranged by size: 4090 835 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3130 1353 Size: 1777 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3787 4161 4307 387 Size: 1064 138 2198 374 146 1280 Fragments arranged by size: 2198 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2148 3263 3860 4647 4915 1239 Size: 393 516 1115 597 787 268 1524 Fragments arranged by size: 1524 1115 787 597 516 393 268 EcoO109I rG'GnC_Cy Cuts at: 2089 2285 2089 Size: 196 5004 EcoRI G'AATT_C Cuts at: 2509 2887 2509 Size: 378 4822 FspI TGC'GCA Cuts at: 3706 3706 Size: 5200 HaeII r_GCGC'y Cuts at: 1678 2437 4347 1678 Size: 759 1910 2531 Fragments arranged by size: 2531 1910 759 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3841 3873 3915 3947 1373 Size: 32 135 32 2269 32 42 32 2626 Fragments arranged by size: 2626 2269 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2011 2041 2544 2790 669 Size: 988 281 73 30 503 246 3079 Fragments arranged by size: 3079 988 503 281 246 73 30 HindIII A'AGCT_T Cuts at: 748 748 Size: 5200 HpaI GTT'AAC Cuts at: 2790 2790 Size: 5200 KpnI G_GTAC'C Cuts at: 2525 2525 Size: 5200 MfeI C'AATT_G Cuts at: 2799 2799 Size: 5200 MluI A'CGCG_T Cuts at: 5076 5076 Size: 5200 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2349 4314 4498 1305 Size: 1044 1965 184 2007 Fragments arranged by size: 2007 1965 1044 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3378 Fragments arranged by size: 3378 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3158 3517 3676 518 Size: 648 1992 359 159 2042 Fragments arranged by size: 2042 1992 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2616 3293 4441 4686 1606 Size: 1010 677 1148 245 2120 Fragments arranged by size: 2120 1148 1010 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2301 2427 513 Size: 552 939 297 126 3286 Fragments arranged by size: 3286 939 552 297 126 NdeI CA'TA_TG Cuts at: 387 387 Size: 5200 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5200 NotI GC'GGCC_GC Cuts at: 2647 2647 Size: 5200 NspI r_CATG'y Cuts at: 1132 1229 2384 2558 4103 1132 Size: 97 1155 174 1545 2229 Fragments arranged by size: 2229 1545 1155 174 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5200 PciI A'CATG_T Cuts at: 4099 4099 Size: 5200 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5200 PfoI T'CCnGG_A Cuts at: 2444 2444 Size: 5200 PmeI GTTT'AAAC Cuts at: 2504 2504 Size: 5200 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3269 3301 4782 4814 3269 Size: 32 1481 32 3655 Fragments arranged by size: 3655 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2089 2285 2089 Size: 196 5004 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5200 PsiI TTA'TAA Cuts at: 2148 2770 2148 Size: 622 4578 PstI C_TGCA'G Cuts at: 830 2552 830 Size: 1722 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5200 SalI G'TCGA_C Cuts at: 1936 2039 2542 1936 Size: 103 503 4594 Fragments arranged by size: 4594 503 103 SbfI CC_TGCA'GG Cuts at: 2552 2552 Size: 5200 ScaI AGT'ACT Cuts at: 3448 5160 3448 Size: 1712 3488 SfcI C'TryA_G Cuts at: 826 1045 2548 3683 4364 4555 826 Size: 219 1503 1135 681 191 1471 Fragments arranged by size: 1503 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5200 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5200 SmaI CCC'GGG Cuts at: 1872 2527 1872 Size: 655 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3304 4205 4467 820 Size: 197 926 1361 901 262 1553 Fragments arranged by size: 1553 1361 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2991 493 Size: 2498 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5200 SphI G_CATG'C Cuts at: 1132 2558 1132 Size: 1426 3774 SspI AAT'ATT Cuts at: 5 52 2416 3124 5 Size: 47 2364 708 2081 Fragments arranged by size: 2364 2081 708 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5200 StyI C'CwwG_G Cuts at: 513 1065 2004 2052 2301 2427 2639 513 Size: 552 939 48 249 126 212 3074 Fragments arranged by size: 3074 939 552 249 212 126 48 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3227 3244 3397 3582 4027 325 Size: 1255 1647 17 153 185 445 1498 Fragments arranged by size: 1647 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3446 5158 96 Size: 274 80 33 51 1443 1469 1712 138 Fragments arranged by size: 1712 1469 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5160 5192 5160 Size: 32 5168 Tth111I GACn'n_nGTC Cuts at: 1316 2087 1316 Size: 771 4429 XbaI T'CTAG_A Cuts at: 2536 2536 Size: 5200 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2219 2219 Size: 5200 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5200 XmaI C'CCGG_G Cuts at: 1870 2525 1870 Size: 655 4545 XmnI GAAnn'nnTTC Cuts at: 2109 3329 2109 Size: 1220 3980 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3008 276 Size: 53 83 186 936 1474 2468 Fragments arranged by size: 2468 1474 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI